;  SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                        10        20        30        40        50     
                        |         |         |         |         |     
shpaltqlralryck----------------------------EIPALDPQLLDWLLLEDSMTKRFEQQG
...............MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVA


        60        70        80        90       100       110        120
        |         |         |         |         |         |          |
KTVSvtmiREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTV------VPVStLSGPELAL
KRVP....KAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG.GEEANREI


              130       140       150       160       170       180    
               |         |         |         |         |         |    
QKLGKTPLGrylftsSTLTRDFIEIGRDAGLWGR-RSRLRLSGKPLLLTELFL-----------------
KRVGGPPEF......SFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRG


    190       200       210       220       230       240       250    
     |         |         |         |         |         |         |    
----------------------------------------------------------------------
FLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPA


    260       270       280       290       300       310       320    
     |         |         |         |         |         |         |    
----------------------------------------------------------------------
FRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG


    330       340       350       360       370       380       390    
     |         |         |         |         |         |         |    
----------------------------------------------------------------------
PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLEN


    400       410       420        
     |         |         |        
---------------------------pasply.
HQLQDGRVRVPQALIPYMGKEVLEPC-g......