;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                 10        20        30        40        50        60 
                  |         |         |         |         |         | 
T0121 ...MAGVRLVDVWKVFGEVTAVRELSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY
1b0uA mmsENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII


                      70        80        90       100        110     
                       |         |         |         |          |     
T0121 IGDRLVA.........DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR.KVPRQE
1b0uA VNGQNINlvrdkdgqlKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVlGLSKHD


        120       130        140       150       160       170       1
          |         |          |         |         |         |        
T0121 IDQRVREVAELLGLTE.LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM
1b0uA ARERALKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV


      80       190       200       210       220       230       240  
       |         |         |         |         |         |         |  
T0121 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGS
1b0uA LRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLK-


           250       260       270       280       290       300      
             |         |         |         |         |         |      
T0121 PPMNFLDAIVTEDGFVDFGEFRLKLLPDQFEVLGELGYVGREVIFGIRPEDLYDAMFARVRVPG
1b0uA ----------------------------------------------------------------


       310       320       330       340       350       360       370
         |         |         |         |         |         |         |
T0121 ENLVRAVVEIVENLGSERIVHLRVGGVTFVGAFRSESRVREGVEVDVVFDMKKIHIFDKTTGK-
1b0uA ----------------------------------------------------------------


                 
                 
T0121 --aif......
1b0uA --gslkkleh.