#! /bin/csh -f
../al2fasta \
    -output t0121.1b0uA.patched.al2fasta.a2m \
    -template 1b0uA \
    -checktarget /projects/compbio/experiments/casp4/done-t121/T0121.seq \
    < t0121.1b0uA.model1.submit.patched.al
prettyalign t0121.1b0uA.patched.al2fasta.a2m \
    > t0121.1b0uA.patched.al2fasta.a2m.pa
