;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
              10        20        30        40                        
               |         |         |         |                        
T0119 -MSNHQ--------------------------------VALQFEDGvtrficiaqgetlsdaay
1cqxA MLTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFNMA..................


                                               50        60        70 
                                                |         |         | 
T0119 rqqinipmdcregecgtcrafcesgnydmpednyiedalTPEEAQQGYVLACQCRPTSDAVFQI
1cqxA .......................................HQEQGQQQQALARAVYAYAENIEDP


             80        90       100       110       120       130     
              |         |         |         |         |         |     
T0119 QASSEVCKTKI-----------------------------------------------------
1cqxA NSLMAVLKNIANKHASLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMG


        140       150       160       170       180       190       20
          |         |         |         |         |         |         
T0119 -----------------HHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLP---
1cqxA MESELYERSAEQPGGWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPA


      0       210       220       230       240       250       260   
      |         |         |         |         |         |         |   
T0119 -GTTETRSYSFSSQPGNRLTGFVVRNVP-----QGKMSEYLSVQAKAGDKMSFTGPFGSFYLR-
1cqxA LGLQQIRQYSLSDMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDV


          270       280       290        300       310       320      
            |         |         |          |         |         |      
T0119 DVKRPVLMLAGGTGIAPFLSMLQVLEQKgSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEY
1cqxA DAKTPIVLISGGVGLTPMVSMLKVALQA.PPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDL


       330         340       350       360       370       380       3
         |           |         |         |         |         |        
T0119 RTVVAHAESqh--------ERKGYVTGHIEYDWLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQP
1cqxA FVFYDQPLP..EDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHE


      90       400   
       |         |   
T0119 ANFLFEKFSAN----
1cqxA ARIHYEVFGPDLFAE