;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0116 megmlkgegpgplppllqqyvelrdqypdylllfqvgdfyecfgedaerlaralglvlthktsk
2reb  ai..............................................................


                                                                      
                                                                      
T0116 dfttpmagiplrafeayaerllkmgfrlavadqvepaeeaeglvrrevtqlltpgtllqesllp
2reb  ................................................................


                                                                      
                                                                      
T0116 reanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafld
2reb  ................................................................


                                                                      
                                                                      
T0116 efrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeat
2reb  ................................................................


                                                                      
                                                                      
T0116 lralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalre
2reb  ................................................................


                                                                      
                                                                      
T0116 gvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeelea
2reb  ................................................................


                                                                      
                                                                      
T0116 alvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgy
2reb  ................................................................


                                                                      
                                                                      
T0116 ylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakr
2reb  ................................................................


                                                                      
                                                                      
T0116 qaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemah
2reb  ................................................................


              10        20        30        40        50        60    
               |         |         |         |         |         |    
T0116 ---------------------------------------------------------ELVLITG
2reb  DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG


          70        80        90        100       110       120       
           |         |         |          |         |         |       
T0116 PNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLpLFDGIYTRIGASDDLAGGKSTFMVEMEEVA
2reb  PESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL.DPIYARKLGVDIDNLLCSQPDTGEQALEIC


      130       140          150               160       170       180
        |         |            |                 |         |         |
T0116 LILKEATENSLVLLDEVGRGtssLDGVAIA........TAVAE-------ALHERR----AYTL
2reb  DALARSGAVDVIVVDSVAAL...TPKAEIEgeigdshmGLAARMMSQAMRKLAGNLKQSNTLLI


                            190       200       210       220         
                              |         |         |         |         
T0116 FATH...............YFELTALGLP-RLKNLH-------------------v-a------
2reb  FINQirmkigvmfgnpettTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK.V.VKNKIA


       230        240       250       260       270       280       29
         |          |         |         |         |         |         
T0116 a----------rEEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAARREG
2reb  .APFKQAEFQI.LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPE


      0       300                              
      |         |                              
T0116 ALDAVLERLLAL--dpdrltplealrllqelkal.......
2reb  TAKEIEKKVREL--llsnpnstpdfsvddsegvaetnedf.