;  SAM: prettyalign v3.2 (July 31, 2000) compiled 07/31/00_16:52:38
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                    10        20        30        40        50        
                     |         |         |         |         |        
T0113 maaavrSVKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKKLGGNCIFAPAN
1hdcB n.....DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLD


      60        70        80        90             100       110      
       |         |         |         |               |         |      
T0113 VTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIktyhekKNQVHTLEDFQRVINVNLIGTFNV
1hdcB VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGM......FLETESVERFRKVVEINLTGVFIG


       120             130       140       150       160       170    
         |               |         |         |         |         |    
T0113 IRLVAGVMGQNepdqggQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIR
1hdcB MKTVIPAMKDA......GGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIR


         180       190       200        210       220         230     
           |         |         |          |         |           |     
T0113 VVTIAPGLFATPLLTTLPDKVRNFLASQvPFPSRLGDPAEYAHLVQMVIEN..PFLNGEVIRLD
1hdcB VNSVHPGMTYTPMTAETGIRQGEGNYPN.TPMGRVGEPGEIAGAVVKLLSDtsSYVTGAELAVD


                      
                      
T0113 Gairmqp.........
1hdcB Ggwttgptvkyvmgq.