;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0109 msfdkqnliwid....................................................
1qqtA tqvakkilvtcalpyangsihlghmlehiqadvwvryqrmrghevnficaddahgtpimlkaqq


                                                                      
                                                                      
T0109 ................................................................
1qqtA lgitpeqmigemsqehqtdfagfnisydnyhsthseenrqlseliysrlkengfiknrtisqly


                                           10                        2
                                            |                         
T0109 .............................LEMTGLDPEKERIIEiativtdknlnilaegPVLA
1qqtA dpekgmflpdrfvkgtcpkckspdqygdnCEVCGATYSPTELIE................PKSV


      0        30        40        50        60               70      
      |         |         |         |         |                |      
T0109 VHQSDELLNKMNDWCQKTHSENGLIERIKASKLTERAAELQTLDFLKKwvpkgasPICGNSIAQ
1qqtA VSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFES.......GLQQWDISR


        80        90            100       110             120       13
         |         |              |         |               |         
T0109 DKRFLVKYMPDLADYFHYRHLDV.....STLKELAARWKP......EILEGFKKENTHLALDDI
1qqtA DAPYFGFEIPNAPGKYFYVWLDApigymGSFKNLCDKRGDsvsfdeYWKKDSTAELYHFIGKDI


      0                                                               
      |                                                               
T0109 RESIKELayyrehfmkld..............................................
1qqtA VYFHSLFwpamlegsnfrkpsnlfvhgyvtvngakmsksrgtfikastwlnhfdadslryyyta


                                                                      
                                                                      
T0109 ................................................................
1qqtA klssriddidlnledfvqrvnadivnkvvnlasrnagfinkrfdgvlaseladpalyktftdaa


                                                                      
                                                                      
T0109 ................................................................
1qqtA evigeawesrefgkavreimaladlanryvdeqapwvvakqagrdadlqaicsmginlfrvlmt


                                                                     
                                                                     
T0109 ...............................................................
1qqtA ylkpvlpklteraeaflnteltwdgiqqpllghkvnpfkalynridmrqvealveaskeevk.