;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0108 ................................................................
1qruA seaearptnfirqiidedlasgkhttvhtrfppepngylhighaksiclnfgiaqdykgqcnlr


                                                                      
                                                                      
T0108 ................................................................
1qruA fddtnpvkedieyvesikndvewlgfhwsgnvryssdyfdqlhayaielinkglayvdeltpeq


                                                                      
                                                                      
T0108 ................................................................
1qruA treyrgtltqpgknspyrdrsveenlalfekmraggfeegkaclrakidmaspfivmrdpvlyr


                                                                      
                                                                      
T0108 ................................................................
1qruA ikfaehhqtgnkwciypmydfthcisdalegithslctlefqdnrrlydwvldnitipvhprqy


                                                                      
                                                                      
T0108 ................................................................
1qruA efsrlnleytvmskrklnllvtdkhvegwddprmptisglrrrgytaasirefckrigvtkqdn


                                           10        20        30     
                                            |         |         |     
T0108 .............................MGASGQYVRARIKGAYYATPVDPVTNQPTAPKDFS
1qruA tiemaslesciredlnenapramavidpv-----------------------------------


         40        50        60        70        80        90       10
          |         |         |         |         |         |         
T0108 SGFWDFNDGTTQGFGVNPDSPITAINVENANNALKISNLNSKGSNDLSEGNFWANVRISADIWG
1qruA ----------------------------------------------------------------


      0       110       120       130         140       150       160 
      |         |         |         |           |         |         | 
T0108 QSINIYGDTKLTMDVIAPTPVNVSIAAIPQSSTHG..WGNPTRARIVWTNNFVAQTDGTYKATL
1qruA ---------KLVIENYQGEGEMVTMPNHPNKPEMGsrQVPFSGEIWIDRADFREEANKQYKRLV


            170       180       190       200                         
              |         |         |         |                         
T0108 TISTNDSPNFNTIATDAADSVVTNMILFVGSNSDNISLDNIKFTK...................
1qruA ---------------------------------------------lgkevrlrnayvikaerve


                                                                      
                                                                      
T0108 ................................................................
1qruA kdaegnittifctydadtlskdpadgrkvkgvihwvsaahalpveirlydrlfsvpnpgaaddf


                                                                      
                                                                      
T0108 ................................................................
1qruA lsvinpeslvikqgfaepslkdavagkafqferegyfcldsrhstaekpvfnrtvglrdtwakv


         
         
T0108 ...
1qruA ge.