;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                           10        20        30     
                                            |         |         |     
T0101 adcssdltsgistkriyyvapngnssnngSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQ
1dbgA mkmlnklagyllpimvllnvapclg....QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLI


         40        50        60                     70        80      
          |         |         |                      |         |      
T0101 GKG-------NTITF----NKSGKDGAPIYVAAancgravfdfsfpDSQWVQASYGFYVTGDYW
1dbgA VSNSGKSGLPITIKALNPGKVFFTGDAKVELRG.............EHLILEGIWFKDGNRAIQ


        90       100       110         120       130                  
         |         |         |           |         |                  
T0101 YFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNrnTGLEIN-----NGGSYNTVINsdayrnydp
1dbgA AWKSHGPGLVAIYGSYNRITACVFDCFDEANS..AYITTSLTEDGKVPQHCRIDH.........


                                               140       150       160
                                                 |         |         |
T0101 kkngsmadgfgpkqkqgpgnrfvgcrawensddgfdlfdspqkVVIENSWAFRNGINYWNDSAF
1dbgA ...........................................CSFTDKITFDQVINLNNTARA


             170       180       190       200       210        220   
               |         |         |         |         |          |   
T0101 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQN---NNAGGVTVINNTSYKNgINYGFGSN
1dbgA IKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQ.DSEAEIIT


          230       240                       250       260        270
            |         |                         |         |          |
T0101 VQSGQKHYFRNNVSLS-ASVTVSNadaksnswdtgpaasaSDFVSLDTSLATVs----------
1dbgA SKSQENVYYGNTYLNCQGTMNFRH................GDHQVAINNFYIG.NDQRFGYGGM


             280       290       300       310       320       330    
               |         |         |         |         |         |    
T0101 -------RDNDGTLP----------ETSLFR---------LSANSKLINAGTKESNISYSGS--
1dbgA FVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNP


         340       350       360       370       380       390       4
           |         |         |         |         |         |        
T0101 ----------------------------------------------------------------
1dbgA LDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGI


      00       410       420         430       440       450       460
       |         |         |           |         |         |         |
T0101 --------------------APDLGAFErn----------------------------------
1dbgA PVNISANRSAYKPVKIKDIQPIEGIALD..LNALISKGITGKPLSWDEVRPYWLKEMPGTYALT


             470       480 
               |         | 
T0101 ---------------------
1dbgA ARLSADRAAKFKAVIKRNKEH