#! /bin/csh -f
../al2fasta \
    -output t0106.1qatB.patched.al2fasta.a2m \
    -template 1qatB \
    -checktarget /projects/compbio/experiments/casp4/t106/T0106.seq \
    < t0106.1qatB.model1.noofs.patched.al
prettyalign t0106.1qatB.patched.al2fasta.a2m \
    > t0106.1qatB.patched.al2fasta.a2m.pa
