From farmer@cse.ucsc.edu Wed Jun 14 02:34:26 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA10761 for Message-Id: <200006140038.RAA19164@alpha.cse.ucsc.edu> Subject: T0100(target 99 alignment) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0100.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 alignment in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results-960943117.t99align.a2m' Content-Disposition: attachment; filename="t99-results-960943117.t99align.a2m" >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGE SRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDS DSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGD GTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYG LGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >gi|7489090|pir||T16975_1:304 pectinesterase (EC 3.1.1.11) isoform 2 - curled-leaved tobacco (fragment)gi|1279598|emb|CAA96434.1| (Z71752) pectin methylesterase [Nicotiana plumbaginifolia] AITANVIVAKDGSG--KYKTVKEAVASVPDNSNsRYVIYVKKGIYKENVE IGkkKKNVMLVGDGMDATIITGN------LNVVDGATTFNSATVAAVGDG FIAQDVQFQNTAG--------------AAKHQAVALRV--GADQSVINRC KIDAFQDTLYTHSLRQFYRDCYITGTVDFIFGNAAVVFQNSKIAARKPGS GQK----NMVTAQGReDPNQNTGTSIQNCDIIPSSDLAPVKgsvKTYLGR PWKAYS--------------RTVFMQSNIGDHIDpeGWSVWDGDFA---- ----LKTLYYGEYMNKGPGAGTSKRVKWPGYhilsaAEATKFTVGQLIQG GVWL--kstgvaytegl >gi|7489091|pir||T16976_1:304 pectinesterase (EC 3.1.1.11) isoform 3 - curled-leaved tobacco (fragment)gi|1279600|emb|CAA96435.1| (Z71753) pectin methylesterase [Nicotiana plumbaginifolia] AITANVVVANDGSG--KYKTIKEAVASVPDNSNsRYVIYVKKGIYKENVE IGkkKKNVMLVGDGMDATIITGN------LNVVDGATTFNSATVAAVGDG FIAQDVQFQNTAG--------------AAKHQAVALRV--GADQSVINRC KIDAFQDTLYTHSLRQFYRDCYITGTVDFIFGNAAVVFQNSKIAARKPGS GQK----NMVTAQGReDPNQNTGTSIQNCDIIPSSDLAPVKgsvKTYLGR PWKAYS--------------RTVFMQSNIGDHIDpeGWSVWDGDFA---- ----LKTLYYGEYMNKGPGAGTSKRVKWPGYhilsaAEATKFTVGQLIQG GVWL--kstgvaytegl >gi|6689890|gb|AAF23891.1|_214:517 (AF152171) pectin methyl esterase [Solanum tuberosum] delitrarvalamlasvttqnedvfrtvlgkmpswvssrdrklmessgkd -IKANAVVAQDGTG--DYQTLAEAVAAAPDKSKtRYVIYVKMGIYKENVE VTsrKMNLMIVGDGMNATIITGS------LNYVDGTTTFRSATLAAVGQG FILQDICIQNTAG--------------PEKHQAVALRV--GGDMSVINRC PIDAYQDTLYAHSQRQFYRDSYVSGTIDFIFGNAAVVFQKCQLVARKPSK NQK----NMVTAQGRtDPNQATGTSIQFCDIIASPDLEPVVkefKTYLGR PWKEYS--------------RTVVMQSYLGGLIDpaGWAEWSGEFA---- ----LKTLYYGEYMNNGPGAGTSKRVKWPGYhvitdpAEAMPFTVAELIQ GGSWL--sstgvayvdglnd >gi|7447380|pir||T10492_270:573 pectinesterase (EC 3.1.1.11) PECS-c1 - sweet orangegi|2098711|gb|AAB57670.1| (U82976) pectinesterase [Citrus sinensis] alamiknmtdtdmmimrtsnnrklteetstvdgwpawlspgdrrllqsss -VTPNAVVAADGSG--NFKTVAAAVAAAPQGGTkRYIIRIKAGVYRENVE VTkkHKNIMFIGDGRTRTIITGS------RNVVDGSTTFKSATVAVVGEG FLARDITFQNTAG--------------PSKHQAVALRV--GADLSAFYNC DMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNS GQK----NMVTAQGRtDPNQNTGIVIQKSRIGATSDLKPVQgsfPTYLGR PWKEYS--------------RTVIMQSSITDLIHpaGWHEWDGNFA---- ----LNTLFYGEHQNSGAGAGTSGRVKWKGFrvitsaTEAQAFTPGSFIA GSSWL--gstgfpfslgl >gi|6174912|sp|O04886|PME1_CITSI_270:573 PECTINESTERASE 1.1 PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|7447383|pir||T10485 pectinesterase (EC 3.1.1.11) PECS1.1 - sweet orangegi|2098705|gb|AAB57667.1| (U82973) pectinesterase [Citrus sinensis] alamiknmtdtdmmimrtsnnrklteetstvdgwpawlspgdrrllqsss -VTPNAVVAADGSG--NFKTVAAAVAAAPQGGTkRYIIRIKAGVYRENVE VTkkHKNIMFIGDGRTRTIITGS------RNVVDGSTTFKSATAAVVGEG FLARDITFQNTAG--------------PSKHQAVALRV--GADLSAFYNC DMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNS GQK----NMVTAQGRtDPNQNTGIVIQKSRIGATSDLKPVQgsfPTYLGR PWKEYS--------------RTVIMQSSITDLIHpaGWHEWDGNFA---- ----LNTLFYGEHQNSGAGAGTSGRVKWKGFrvitsaTEAQAFTPGSFIA GSSWL--gstgfpfslgl >gi|6093734|sp|Q96575|PM22_LYCES_234:538 PECTINESTERASE 2 PRECURSOR (PECTIN METHYLESTERASE 2) (PE 2)gi|1617584|gb|AAB38792.1| (U70675) pectin methylesterase [Lycopersicon esculentum] delisrakvalamlasvttpnddvlrpglgkmpswvssrdrklmessgkd -IGANAVVAKDGTG--KYRTLAEAVAAAPDKSKtRYVIYVKRGIYKENVE VSsrKMKLMIVGDGMHATIITGN------LNVVDGSTTFHSATLAAVGKG FILQDICIQNTAG--------------PAKHQAVALRV--GADKSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCNIIASSDLEPVLkefPTYLGR PWKKYS--------------RTVVMESYLGGLINpaGWAEWDGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhcitdpAEAMPFTVAKLIQ GGSWLR-stgvayvdglyd >gi|1256263|gb|AAB67739.1|_234:538 (U50985) pectin methylesterase PME2.1 [Lycopersicon esculentum] delisrakvalamlasvttpndevlrpglgkmpswvssrdrklmessgkd -IGANAVVAKDGTG--KYRTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VSsrKMNLMIIGDGMYATIITGS------LNVVDGSTTFHSATLAAVGKG FILQDICIQNTAG--------------PAKHQAVALRV--GADKSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCDIIASPDLKPVVkefPTYLGR PWKKYS--------------RTVVMESYLGGLIDpsGWAEWHGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhcitdpAEAMSFTVAKLIQ GGSWLR-stdvayvdglyd >gi|2507165|sp|P09607|PM21_LYCES_234:538 PECTINESTERASE 2 PRECURSOR (PECTIN METHYLESTERASE 2) (PE 2)gi|1076587|pir||S46528 pectinesterase (EC 3.1.1.11) precursor (clone B16) - tomatogi|398718|emb|CAA52704.1| (X74639) pectin esterase [Lycopersicon esculentum] delisrakvalamlasvttpndevlrpglgkmpswvssrdrklmessgkd -IGANAVVAKDGTG--KYRTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VSsrKMNLMIIGDGMYATIITGS------LNVVDGSTTFHSATLAAVGKG FILQDICIQNTAG--------------PAKHQAVALRV--GADKSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCDIIASPDLKPVVkefPTYLGR PWKKYS--------------RTVVMESYLGGLIDpsGWAEWHGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpAEAMSFTVAKLIQ GGSWLR-stdvayvdglyd >gi|6093744|sp|Q43062|PME_PRUPE_205:510 PECTINESTERASE PPE8B PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|1213629|emb|CAA65237.1| (X95991) pectinesterase [Prunus persica] glisaglgqvtslvqelltqvhpnsnqqgpngqipswvktkdrkllqadg -VSVDAIVAQDGTG--NFTNVTDAVLAAPDYSMrRYVIYIKRGTYKENVE IKkkKWNLMMIGDGMDATIISGN------RSFVDGWTTFRSATFAVSGRG FIARDITFENTAG--------------PEKHQAVALRS--DSDLSVFYRC NIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLP NQK----NSITAQGRkDPNEPTGISIQFCNITADSDLEAASvnstPTYLG RPWKLYS--------------RTVIMQSFLSNVIRpeGWLEWNGDFA--- -----LNSLFYGEYMNYGPGAGLGSRVKWPGYqvfnesTQAKNYTVAQFI EGNLWLP-stgvkytaefgv >gi|7649367|emb|CAB89048.1|_213:515 (AL353871) pectinesterase-like protein [Arabidopsis thaliana] ltmvhsppskpkpkpikaqtmtkahsgfskfpswvkpgdrkllqtdnitv ---ADAVVAADGTG--NFTTISDAVLAAPDYSTkRYVIHVKRGVYVENVE IKkkKWNIMMVGDGIDATVITGN------RSFIDGWTTFRSATFAVSGRG FIARDITFQNTAG--------------PEKHQAVAIRS--DTDLGVFYRC AMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLP NQK----NSITAQGRkDPNEPTGFTIQFSNIAADTDLLLNLnttATYLGR PWKLYS--------------RTVFMQNYMSDAINpvGWLEWNGNFA---- ----LDTLYYGEYMNSGPGASLDRRVKWPGYhvlntsAEANNFTVSQLIQ GNLWLP-stgitfiaglvs >gi|6689892|gb|AAF23892.1|AF152172_1_262:565 (AF152172) pectin methyl esterase [Solanum tuberosum] snalamicnmtntdianemklsgsrklvedngewpewlsagdrrllqsst -VTPDVVVAADGSG--DYKTVSEAVAKAPEKSSkRYVIRIKAGVYRENVD VPkkKTNIMFMGDGRSNTIITAS------RNVQDGSTTFHSATVAAVGEK FLARDITFQNTAG--------------ASKHQAVALRV--GSDLSAFYKC DILAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVLQDCDIHARRPGS GQK----NMVTAQGRtDPNQNTGIVIQKCRIGATSDLRPVQksfPTYLGR PWKEYS--------------RTVIMQSSITDVIQpaGWHEWNGNFA---- ----LNTLFYGEYANTGAGAATSGRVKWKGHkvitssTEAQAYTPGSFIA GGSWL--sstgfpfslgl >gi|82097|pir||S00629_58:362 pectinesterase (EC 3.1.1.11) precursor (clone PE1) - tomatogi|19289|emb|CAA30746.1| (X07910) pectin esterase precursor (AA -57 to 332) [Lycopersicon esculentum] delisrakvalamlasvttpndevlrpglgkmpswvssrdrklmessgkd -IGANAVVAKDGTG--KYRTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VSsrKMNLMIIGDGMYATIITGS------LNVVDGSTTFHSATLAAVGKG FILQDICIQNTAG--------------PAKHQAVALRV--GADKSVINRC RIDAYQDTLYAHSQRQFYQSSYVTGTIDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCDIIASPDLKPVVkefPTYLGR PWKKYS--------------RTVVMESSLGGLIDpsGWAEWHGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpAEAMSFTVAKLIQ GGSWLR-stdvayvdglydysdikllfvyvtrhl >gi|6174913|sp|P14280|PME1_LYCES_230:534 PECTINESTERASE 1 PRECURSOR (PECTIN METHYLESTERASE 1) (PE 1)gi|1076588|pir||S46527 pectinesterase (EC 3.1.1.11) precursor (clone B8) - tomatogi|398716|emb|CAA52703.1| (X74638) pectin esterase [Lycopersicon esculentum] eelisrakvalamlaslttqdedvfmtvlgkmpswvssmdrklmessgkd -IIANAVVAQDGTG--DYQTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VAsnKMNLMIVGDGMYATTITGS------LNVVDGSTTFRSATLAAVGQG FILQDICIQNTAG--------------PAKDQAVALRV--GADMSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCNIIASSDLEPVLkefPTYLGR PWKEYS--------------RTVVMESYLGGLINpaGWAEWDGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpAKAMPFTVAKLIQ GGSWLR-stgvayvdglyd >gi|6056392|gb|AAF02856.1|AC009324_5_273:576 (AC009324) pectinesterase 2 [Arabidopsis thaliana] dianfelrdksstftnnnnrklkevtgdldsdgwpkwlsvgdrrllqgst -IKADATVADDGSG--DFTTVAAAVAAAPEKSNkRFVIHIKAGVYRENVE VTkkKTNIMFLGDGRGKTIITGS------RNVVDGSTTFHSATVAAVGER FLARDITFQNTAG--------------PSKHQAVALRV--GSDFSAFYQC DMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNS GQK----NMVTAQGRsDPNQNTGIVIQNCRIGGTSDLLAVKgtfPTYLGR PWKEYS--------------RTVIMQSDISDVIRpeGWHEWSGSFA---- ----LDTLTYREYLNRGGGAGTANRVKWKGYkvitsdTEAQPFTAGQFIG GGGWL--astgfpfslsl >gi|1256267|gb|AAB67740.1|_114:418 (U50986) PME1.9 [Lycopersicon esculentum] eelisrakvalamlaslttqdedvlmtvlgkmpswvssmdrklmessgkd -IIANAVVAQDGTG--DYQTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VSsnKMNLMIVGDGMYATTITGS------LNVVDGSTTFRSATLAAVGQG FILQDICIQNTAG--------------PAKDQAVALRV--GADMSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGRtDPNQATGTSIQFCDIIASSDLEPLLkefPTYLGR PWKEYS--------------RTVVMESYLGGLINpaGWAEWDGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpAKAIPFTVAKLIQ GGSWLR-stgvayvdglyd >gi|1617588|gb|AAB38794.1|_123:427 (U70677) pectin methylesterase [Lycopersicon esculentum] eelisrakvalamlaslttqdedvfmtglgkmpswvssmdrklmessgkd -IIANRVVAQDGTG--KYRTLAEAVAAAPNRSKkRYVIYVKRGIYKENVE VSsnKMNLMIVGDGMYATTITGS------LNVVDGSTTFRSATLAAVGQG FILQDICIQNTAG--------------PAKDQAVALRV--GADMSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGK YQQ----NMVTAQGTtDPNQATGTSIQFCNIIASSDLEPVLkefPTYLGR PWKEYS--------------RTVVMESYLGGLINpaGWAEWDGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpAKAMPFTVAKLIQ GGSWLR-stgvayvdglyd >gi|2895510|gb|AAC72288.1|_278:581 (AF033204) putative pectin methylesterase [Arabidopsis thaliana] akitsnnrklkeenqettvavdiagageldsegwptwlsagdrrllqgsg -VKRDATVAADGSG--TFKTVAAAVAAAPENSNkRYVIHIKAGVYRENVE VAkkKKNIMFMGDGRTRTIITGS------RNVVDGSTTFHSATVAAVGER FLARDITFQNTAG--------------PSKHQAVALRV--GSDFSAFYNC DMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNS GQK----NMVTAQGRtDPNQNTGIVIQKCRIGATSDLQSVKgsfPTYLGR PWKEYS--------------QTVIMQSAISDVIRpeGWSEWTGTFA---- ----LNTLTYREYSNTGAGAGTANRVKWRGFkvitaaAEAQKYTAGQFIG GGGWL--sstgfpfslgl >gi|6174914|sp|O04887|PME2_CITSI_199:500 PECTINESTERASE 2.1 PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|7447379|pir||T10491 pectinesterase (EC 3.1.1.11) PECS2.1 - sweet orangegi|2098709|gb|AAB57669.1| (U82975) pectinesterase [Citrus sinensis] eyvlpllsnnvtklisntlslnkvpynepsykdgfptwvkpgdrkllqtt -PRANIVVAQDGSG--NVKTIQEAVAAASRAGGsRYVIYIKAGTYNENIE VKLKNIMFVGDGIGKTIITGS------KSVGGGATTFKSATVAVVGDNFI ARDITIRNTAG--------------PNNHQAVALRS--GSDLSVFYRCSF EGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP---- -PNRTNTLTAQGRtDPNQSTGIIIHNCRVTAASDLKPVQssvKTFLGRPW KQYS--------------RTVYIKTFLDSLINpaGWMEWSGDFA------ --LNTLYYAEYMNTGPGSSTANRVKWRGYhvltspSQVSQFTVGNFIAGN SWLP-atnvpftsgl >gi|7447367|pir||S78456_4:309 pectinesterase (EC 3.1.1.11) precursor - mung bean (fragment)gi|1149556|emb|CAA64217.1| (X94443) pectinmethylesterase [Vigna radiata] gad-VKANVVVAQDGSG--KFKTVTEAVASAPDNGKtRYVIYVKKGTYKE HVEIGkkKKNIMLVGDGMDATIITGS------LNFIDGTTTFNSATVAAV GDGFIGQDIWFQNTAG--------------AAKHQAVALRV--GADQSVI NRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARK PMSNQK----NMVTAQGReDPNQNTGTSIQQCNLTPSSDLKAVVgsiKTY LGRPWKKYS--------------RTVIMQSSIDSHIDptGWAEWDaqSKD F--------LQTLYYGEYMNSGAGAGTSKRVNWPGYhiitsaAEASKFTV TQLIQGNVWL--kntgvnfiegl >gi|7447381|pir||T10494_199:500 pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orangegi|2098713|gb|AAB57671.1| (U82977) pectinesterase [Citrus sinensis] eyvlpllsnnvtklisnalslnkvpynepsykdgfptwvkpgdrkllqtt -PRANIVVAQDGSG--NVKTIQEAVAAASRAGGsRYVIYIKAGTYNENIE VKLKNIMFVGDGIGKTIITGS------KSVGGGATTFKSATVAVVGDNFI ARDITIRNTAG--------------PNNHQAVALRS--GSDLSVFYRCSF EGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARXP---- -PNRTNTLTAQGRtDPNQNTGIIIHNCRVTAASDLKPVQssvKTFLGRPW KQYS--------------RTVXIKTFLDSLINpaGWMEWSGDFA------ --LNTLYYAEYMNTGPGSSTANRVKWRGYhvltspSQVSQFTVGNFIAGN SWLP-atnvpftsgl >gi|6093737|sp|Q42534|PME2_ARATH_268:571 PECTINESTERASE 2 (PECTIN METHYLESTERASE 2) (PE 2)gi|2129667|pir||PC4168 pectinesterase (EC 3.1.1.11) 2 precursor - Arabidopsis thaliana (fragment)gi|903894|gb|AAC50023.1| (U25649) ATPME2 precursor [Arabidopsis thaliana] dianfelrdkffnlhqqqqrklkevtgdldsdgwpkwlsvgdrrllqgst -IKADATVADDGSG--DFDNGSAAVAAAPEKSNkRFVIHIKAGVYRENVE VTkkKTNIMFLGDGRGKTIITGS------RNVVDGSTTFHSATVAAVGER FLARDITFQNTAG--------------PSKHQAVALRV--GSDFSAFYQC DMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNS GQK----NMVTAQGRsDPNQNTGIVIQNCRIGGTSDLLAVKgtfPTYLGR PWKEYS--------------RTVIMQSDISDVIRpeGWHEWSGSFA---- ----LDTLTYREYLNRGGGAGTANRVKWKGYkvitsdTEAQPFTAGQFIG GGGWL--astgfpfslsl >gi|6093740|sp|Q43143|PMEU_LYCES_269:572 PECTINESTERASE U1 PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|7447374|pir||T07848 pectinesterase (EC 3.1.1.11) - tomatogi|1222552|gb|AAD09283.1| (U49330) pectin methylesterase [Lycopersicon esculentum] lamicnmtdtdianemklsapannrklvedngewpewlsagdrrllqsst -VTPDVVVAADGSG--DYKTVSEAVRKAPEKSSkRYVIRIKAGVYRENVD VPkkKTNIMFMGDGKSNTIITAS------RNVQDGSTTFHSATVVRVAGK VLARDITFQNTAG--------------ASKHQAVALCV--GSDLSAFYRC DMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGS GQK----NMVTAQGRtDPNQNTGIVIQKCRIGATSDLRPVQksfPTYLGR PWKEYS--------------RTVIMQSSITDVIQpaGWHEWNGNFA---- ----LDTLFYGEYANTGAGAPTSGRVKWKGHkvitssTEAQAYTPGRFIA GGSWL--sstgfpfslgl >gi|6093738|sp|Q96576|PME3_LYCES_229:531 PECTINESTERASE 3 PRECURSOR (PECTIN METHYLESTERASE 3) (PE 3)gi|7447364|pir||T07593 pectinesterase (EC 3.1.1.11) 3 precursor - tomatogi|1617586|gb|AAB38793.1| (U70676) pectin methylesterase [Lycopersicon esculentum] delitrakvalamlasvttpndevlrqglgkmpywvssrdrklmessgkd -IIANRVVAQDGTG--DYQTLAEAVAAAPDKNKtRYVIYVKMGIYKENVV VTkkKMNLMIVGDGMNATIITGS------LNVVDG-STFPSNTLAAVGQG FILQDICIQNTAG--------------PEKDQAVALRV--GADMSVINRC RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNK RQK----NMVTAQGRtDPNQATGTSIQFCDIIASPDLEPVMneyKTYLGR PWKKHS--------------RTVVMQSYLDGHIDpsGWFEWRGDFA---- ----LKTLYYGEFMNNGPGAGTSKRVKWPGYhvitdpNEAMPFTVAELIQ GGSWL--nstsvayveglve >gi|7447371|pir||T06374_238:543 probable pectinesterase (EC 3.1.1.11) precursor - garden peagi|3088646|gb|AAC14742.1| (AF056493) pectin methylesterase [Pisum sativum]gi|3426335|gb|AAC32273.1| (AF081457) pectin methylesterase [Pisum sativum] israrsslavlvsvlpaksndgfideslngefpswvtskdrrllestvgd -IKANVVVAKDGSG--KFKTVAEAVASAPDNGKaRYVIYVKRGTYKEKVE IGkkKTNVMLVGDGMDATIITGN------LNFIDGTTTFNSATVAAVGDG FIAQDIGFQNTAG--------------PEKHQAVALRV--GADQSVINRC KIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAGVVFQKSKLVARKPMS NQK----NMVTAQGReDPNQNTATSIQQCNVIPSSDLKPVQgsiKTYLGR PWKKYS--------------RTVVLQSVVDSHIDpaGWAEWDaaSKDF-- ------LQTLYYGEYLNSGAGAGTSKRVTWPGYhiiktaAEASKFTVTQL IQGNVWL--kntgvafiegl >gi|7447372|pir||T06468_238:543 pectinesterase (EC 3.1.1.11) precursor - garden peagi|2578440|emb|CAA47810.1| (X67425) pectinesterase [Pisum sativum] israrsslavlvsvlpaksndgfideslngefpswvtskdrrllestvgd -IKANVVVAKDGSG--KFKTVAEAVASAPDNGKaRYVIYVKRGTYKEKVE IGkkKTNVMLVGDGMDATIITGN------LNFIDGTTTFNSATVAAVGDG FIAQDIGFQNTAG--------------PEKHQAVALRV--GADQSVINRC KIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAGVVFQKSKLVARKPMS NQK----NMVTAQGReDPNQNTATSIQQCNVIPSSDLKPVQgsiKTYLGR PWKKYS--------------RTVVLQSVVDSHIDpaGWAEWDaaSKDF-- ------LQTLYYGEYLNSGAGAGTSKRVTWPGYhiiktaAEASKFTVTQL IQGNVWL--kntgvafiegl >gi|7447375|pir||T05202_162:465 pectinesterase homolog F4I10.150 - Arabidopsis thalianagi|4455336|emb|CAB36796.1| (AL035525) pectinesterase-like protein [Arabidopsis thaliana]gi|7270270|emb|CAB80039.1| (AL161583) pectinesterase-like protein [Arabidopsis thaliana] pkavskpgpiakgpkappgrklrdtdedeslqfpdwvrpddrkllesngr --TYDVSVALDGTG--NFTKIMDAIKKAPDYSStRFVIYIKKGLYLENVE IKkkKWNIVMLGDGIDVTVISGN------RSFIDGWTTFRSATFAVSGRG FLARDITFQNTAG--------------PEKHQAVALRS--DSDLSVFFRC AMRGYQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLP NQK----NTITAQGRkDVNQPSGFSIQFSNISADADLVPYLnttRTYLGR PWKLYS--------------RTVFIRNNMSDVVRpeGWLEWNADFA---- ----LDTLFYGEFMNYGPGSGLSSRVKWPGYhvfnnsDQANNFTVSQFIK GNLWLP-stgvtfsdglyi >gi|6714448|gb|AAF26135.1|AC011620_11_239:531 (AC011620) putative pectinesterase [Arabidopsis thaliana] qlvsnvldmytqlnalpfkasrnesviaspewltetdeslmmrhdpsvmh ---PNTVVAIDGKG--KYRTINEAINEAPNHSTkRYVIYVKKGVYKENID LKkkKTNIMLVGDGIGQTIITGD------RNFMQGLTTFRTATVAVSGRG FIAKDITFRNTAG--------------PQNRQAVALRV--DSDQSAFYRC SVEGYQDTLYAHSLRQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLP LQK----VTITAQGRkSPNQNTGFVIQNSYVLATQ------PTYLGRPWK LYS--------------RTVYMNTYMSQLVQprGWLEWFGNFA------- -LDTLWYGEYNNIGPGWRSSGRVKWPGYhimdkRTALSFTVGSFIDGRRW LP-atgvtftaglan >gi|2583131|gb|AAB82640.1|_202:501 (AC002387) putative pectinesterase [Arabidopsis thaliana] vlplmsnnvsnllcntlainkvpfnytppekdgfpswvkpgdrkllqsst -PKDNAVVAKDGSG--NFKTIKEAIDAA--SGSgRFVIYVKQGVYSENLE IRKKNVMLRGDGIGKTIITGS------KSVGGGTTTFNSATVAAVGDGFI ARGITFRNTAG--------------ASNEQAVALRS--GSDLSVFYQCSF EAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRP---- -RSKTNTITAQGRsDPNQNTGIIIHNSRVTAASDLRPVLgstKTYLGRPW RQYS--------------RTVFMKTSLDSLIDprGWLEWDGNFA------ --LKTLFYAEFQNTGPGASTSGRVTWPGFrvlgsaSEASKFTVGTFLAGG SWIP-ssvpftsgl >gi|7447384|pir||T04359_247:550 pectin methylesterase-like protein - maizegi|2239262|emb|CAA73733.1| (Y13285) pectin methylesterase-like protein [Zea mays] tnslggilkkmdlgmfskdsrrrllsseqdekgwpvwmrsperkllasgn QPKPNAIVAKDGSG--QFKSIQQAVDAVPKGHQgRYVIYVKAGLYDEIVM VPkdKVNIFMYGDGPKQSRVTGR------KSFADGITTMKTATFSVEASG FICKNMGFHNTAG--------------AERHQAVALRV--QGDLAAFYNC RFDAFQDTLYVQPRRQFFRNCVVSGTIDFIFGNSAAVFQNCLIITRRPMD NQQ----NSVTAHGPtDPNMKSGLVIQNCRLVPDQKLFPDRfkiPSYLGR PWKEFS--------------RLVIMESTIADFVKpeGYMPWNGDFA---- ----LKTLYYAEYNNRGPGAGTSKRVNWPGFhvigrKEAEPFTAGPFIDG AMWL--kytgaphilgfkf >gi|6714532|dbj|BAA89480.1|_283:584 (AB029461) pectin methylesterase [Salix gilgiana] vsflknfsfsgtlnrrllaeeqnspsldkdgvpgwmshedrrilkgadkd KPKPNVSVAKDGSG--DFKTISEALAAMPAKYEgRYVIFVKQGVYDETVT VTkkMANITMYGDGSQKTIVTGN------KNFADGVQTFRTATFAVLGDG FLCKFMGFRNTAG--------------PEKHQAVAIRV--QADRAIFLNC RFEGYQDTLYAQTHRQFYRSCVITGTVDFIFGDATSVFQNCLITVRKPLE NQQ----NIVTAQGRiDGHETTGIVLQSCRIEPDKDLVPVKnkiRSYLGR PWKEFS--------------RTVIMDSTIGDFIHpgGWLPWQGDFG---- ----LKTLYYAEYSNKGGGAQTNARIKWPGYhiikkEEAMKFTIENFYQG DW----isasgspvhlgl >gi|6714449|gb|AAF26136.1|AC011620_12_252:555 (AC011620) putative pectinesterase [Arabidopsis thaliana] glaiisemsnfvgqmqipglnsrrllaegfpswvdqrgrkllqaaaaysd -VKPDIVVAQDGSG--QYKTINEALQFVPKKRNtTFVVHIKAGLYKEYVQ VNktMSHLVFIGDGPDKTIISGN------KNYKDGITTYRTATVAIVGNY FIAKNIGFENTAG--------------AIKHQAVAVRV--QSDESIFFNC RFDGYQDTLYTHSHRQFFRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLP NQA----CPITAHGRkDPRESTGFVFQGCTIAGEPDYLAVKetsKAYLGR PWKEYS--------------RTIIMNTFIPDFVQpqGWQPWLGDFG---- ----LKTLFYSEVQNTGPGSALANRVTWAGIktlseEDILKFTPAQYIQG DDWIP-gkgvpyttgllagnpaaatttpsvsaaapgfstftdtsgadsia ptaspa >gi|7447366|pir||T01317_259:559 probable pectinesterase (EC 3.1.1.11) precursor T14P8.14 - Arabidopsis thalianagi|3193296|gb|AAC19280.1| (AF069298) similar to pectinesterase [Arabidopsis thaliana]gi|7268993|emb|CAB80726.1| (AL161494) strong similarity to similar to pectinesterase~Contains Pectinesterase signatures AA407-414~contains EST gb:AI239384 [Arabidopsis thaliana] hshtkpfrhfrngalplkmtehtravyeslsrrkladddndvntvlvsdi -----VTVNQNGTG--NFTTITEAVNSAPNKTDgtagYFVIYVTSGVYEE NVVIAknKRYLMMIGDGINRTVVTGN------RNVVDGWTTFNSATFAVT SPNFVAVNMTFRNTAG--------------PEKHQAVAMRS--SADLSIF YSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQ PMQNQF----NAITAQGRtDPNQNTGISIHNCTIKPADDLVSSNytvKTY LGRPWKEYS--------------RTVFMQSYIDEVVEpvGWREWNGDFA- -------LSTLYYAEYNNTGSGSSTTDRVVWPGYhvinsTDANNFTVENF LLGDGW---mvqsgvpyisglls >gi|2829892|gb|AAC00600.1|_248:543 (AC002311) putative pectinesterase [Arabidopsis thaliana] pstgftkfskqrssagggshrrlllfsdekfpswfplsdrklledsktta --KADLVVAKDGSG--HYTSIQQAVNAAAKLPRrnqRLVIYVKAGVYREN VVIKksIKNVMVIGDGIDSTIVTGN------RNVQDGTTTFRSATFAVSG NGFIAQGITFENTAG--------------PEKHQAVALRS--SSDFSVFY ACSFKGYQDTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKP MSGQK----NTITAQSRkEPDETTGFVIQSSTVATAS------ETYLGRP WRSHS--------------RTVFMKCNLGALVSpaGWLPWSGSFA----- ---LSTLYYGEYGNTGAGASVSGRVKWPGYhviktvTEAEKFTVENFLDG NYWI--tatgvpvndgl >gi|7447365|pir||T01318_203:507 pectinesterase homolog T14P8.1 - Arabidopsis thalianagi|3193288|gb|AAC19272.1| (AF069298) similar to bacterial and fungi pectinesterases [Arabidopsis thaliana]gi|7268992|emb|CAB80725.1| (AL161494) pectinesterase-like protein [Arabidopsis thaliana] slfnisshvsdslamlenipghipgkvkedvgfpmwvsgsdrnllqdpvd ETKVNLVVAQNGTG--NYTTIGEAISAAPNSSEtRFVIYIKCGEYFENIE IPreKTMIMFIGDGIGRTVIKAN------RSYADGWTAFHSATVGVRGSG FIAKDLSFVNYAG--------------PEKHQAVALRS--SSDLSAYYRC SFESYQDTIYVHSHKQFYRECDIYGTVDFIFGDASVVFQNCSLYARRPNP NQK----IIYTAQGReNSREPTGISIISSRILAAPDLIPVQanfKAYLGR PWQLYS--------------RTVIMKSFIDDLVDpaGWLKWKDDFA---- ----LETLYYGEYMNEGPGSNMTNRVQWPGFkrietvEEASQFSVGPFID GNKWL--nstripftldl >gi|7549630|gb|AAF63815.1|_248:552 (AC023912) pectin methylesterase, putative [Arabidopsis thaliana] mvtristlipnsnltakyarkllstedsiptwvgpearrlmaaqgggpgp -VKANAVVAQDGTG--QFKTITDALNAVPKGNKvPFIIHIKEGIYKEKVT VTkkMPHVTFIGDGPNKTLITGS------LNFGiGKVKTFLTATITIEGD HFTAKNIGIENTAG--------------PEGGQAVALRV--SADYAVFHS CQIDGHQDTLYVHSHRQFYRDCTVSGTVDFIFGDAKCILQNCKIVVRKPN KGQT----CMVTAQGRsNVRESTGLVLHGCHITGDPAYIPMKsvnKAYLG RPWKEFS--------------RTIIMKTTIDDVIDpaGWLPWSGDFA--- -----LKTLYYAEHMNTGPGSNQAQRVKWPGIkkltpQDALLYTGDRFLR GDTWIP-qtqvpytakv >gi|6630558|gb|AAF19577.1|AC011708_20_296:603 (AC011708) putative pectinesterase [Arabidopsis thaliana] gkilgggnstyrepletlikglrktcdndkdcrktsrnlgelgetsggsi LVSKAVIVGPFKSD--NFTTITDAIAAAPNNTRpedgYFVIYAREGVYEE YIVVPinKKNLMLMGDGINKTIITGN------HNVVDGWTTYNCSSFAVV GERFMAVDVTFRNTAG--------------PEKHQAVALRN--NAEGSSF YRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARK PMAKQK----NAITAHGRlDPNQNTGISIINCTIKAAPDLAAEPksaMTF LGRPWKPYS--------------RTVFMQSYISDIVQpvGWLEWNGTIG- -------LDTIYYGEYSNFGPGANTNQRVQWLGYnllnlAEAMNFTVYNF TMGDTWLP-qtdipfyggllske >gi|6723392|emb|CAB66401.1|_280:586 (AL132956) pectinesterase-like protein [Arabidopsis thaliana] laifsashdgddfagvpiqnrrllgveereekfprwmrpkereilempvs QIQADIIVSKDGNG--TCKTISEAIKKAPQNSTrRIIIYVKAGRYEENnL KVGrkKINLMFVGDGKGKTVISGG------KSIFDNITTFHTASFAATGA GFIARDITFENWAG--------------PAKHQAVALRI--GADHAVIYR CNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPM DFQK----NTITAQNRkDPNQNTGISIHASRVLAASDLQATNgstQTYLG RPWKLFS--------------RTVYMMSYIGGHVHtrGWLEWNTTFA--- -----LDTLYYGEYLNSGPGSGLGQRVSWPGYrvinstAEANRFTVAEFI YGSSWLP-stgvsflaglsi >gi|6056422|gb|AAF02886.1|AC009525_20_265:566 (AC009525) Similar to pectinesterases [Arabidopsis thaliana] pfrlfrngalplkmtektkavyeslsrrkladgdsngdgddgsmvlisdi -----VTVSQDGTG--NFTNITAAVAAAPNNTDgsagFFLIYVTAGIYEE YISIAknKRYMMMIGDGINQTVVTGN------RSVVDGWTTFNSATFAVT APNFVAVNITFRNTAG--------------PEKHQAVALRS--GADFSIF YSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRK PMPNQF----NAITAQGRsDPNQNTGTSIQNCTIKPADDLVSSNytvKTY LGRPWKEYS--------------RTVYMQSYIDGFVEpvGWREWNGDFA- -------LSTLYYAEYNNTGPGSNTTNRVTWPGYhvinsTDAANFTVTGL FIEADWI--wktgvpytsglis >gi|7447370|pir||T00429_155:456 probable pectinesterase (EC 3.1.1.11) T30B22.15 - Arabidopsis thalianagi|2529672|gb|AAC62855.1| (AC002535) putative pectinesterase [Arabidopsis thaliana] asenglsgdlfndtklygvslalfskginkswvprrqrsrpiwqpqasdi -----VTVIQNGTG--NFTTINAAIAAAPnktDGSNgYFLIYVTAGLYEE YVEVPknKRYVMMIGDGINQTVITGN------RSVVDGWTTFNSATFILS GPNFIGVNITIRNTAG--------------PTKGQAVALRS--GGDLSVF YSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQ PRKGQS----NEVTAQGRtDPNQNTGTAIHGCTIRPADDLATSNytvKTY LGRPWKEYS--------------RTVVMQTYIDGFLEpsGWNAWSGDFA- -------LSTLYYAEYNNTGPGSDTTNRVTWPGYhvinaTDASNFTVTNF LVGEGWI--gqtgvpfvgglia >gi|7329683|emb|CAB82677.1|_193:486 (AL162295) pectinesterase-like protein [Arabidopsis thaliana] kksrarqghgptrpkhrptrpnhgpgrshhgpsrpnqnggmlvswnptss --RADFVVARDGSA--THRTINQALAAVSRMGKsrlnRVIIYIKAGVYNE KIEIDrhMKNIMLVGDGMDRTIVTNN------RNVPDGSTTYGSATFGVS GDGFWARDITFENTAG--------------PHKHQAVALRV--SSDLSLF YRCSFKGYQDTLFTHSLRQFYRDCHIYGTIDFIFGDAAAVFQNCDIFVRR PMDHQG----NMITAQGRdDPHTNSEFEAVKGRF----------KSYLGR PWKKYS--------------RTVFLKTDIDELIDprGWREWSGSYA---- ----LSTLYYGEFMNTGAGAGTGRRVNWPGFhvlrgeEEASPFTVSRFIQ GDSWIP-itgvpfsagv >gi|7447369|pir||T00977_234:536 pectinesterase homolog T9J22.11 - Arabidopsis thalianagi|2739369|gb|AAC14493.1| (AC002505) putative pectinesterase [Arabidopsis thaliana] salpkqrrttnpktggntknrrllglfpdwvykkdhrfledssdgydeyd -PSESLVVAADGTG--NFSTINEAISFAPNMSNdRVLIYVKEGVYDENID IPiyKTNIVLIGDGSDVTFITGN------RSVGDGWTTFRSATLAVSGEG FLARDIMITNTAG--------------PEKHQAVALRV--NADFVALYRC VIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMP GQF----TVITAQSRdTQDEDTGISMQNCSILASEDLFNSSnkvKSYLGR PWREFS--------------RTVVMESYIDEFIDgsGWSKWNGGEA---- ----LDTLYYGEYNNNGPGSETVKRVNWPGFhimgyEDAFNFTATEFITG DGWL--gstsfpydngi >gi|4531441|gb|AAD22126.1|AC006224_8_213:506 (AC006224) putative pectinesterase [Arabidopsis thaliana] tglltssldlfvsvkskhrkllskqeyfptfvpsseqrrlleapveelnv ----DAVVAPDGSG--THKTIGEALLSTSLASSggRTKIYLKAGTYHENI NIPtkQKNVMLVGDGKGKTVIVGS------RSNRGGWTTYKTATVAAMGE GFIARDMTFVNNAG--------------PKSEQAVALRV--GADKSVVHR CSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPL PGQR----NFVTAQGRsNPGQNTGIAIQNCRITAES------MTYLGRPW KEYS--------------RTVVMQSFIGGSIHpsGWSPWSGGFG------ --LKSLFYGEYGNSGPGSSVSGRVKWSGChpsltvTEAEKFTVASFIDGN IWLP-stgvsfdpglvn >gi|6630559|gb|AAF19578.1|AC011708_21_254:551 (AC011708) putative pectinesterase [Arabidopsis thaliana] ltsnalaiitwlgkiadsfklrrrllttadvevdfhagrrllqstdlrkv ---ADIVVAKDGSG--KYRTIKRALQDVPEKSEkRTIIYVKKGVYFENVK VEkkMWNVIVVGDGESKSIVSGR------LNVIDGTPTFKTATFAVFGKG FMARDMGFINTAG--------------PSKHQAVALMV--SADLTAFYRC TMNAYQDTLYVHAQRQFYRECTIIGTVDFIFGNSASVLQSCRILPRRPMK GQQ----NTITAQGRtDPNMNTGISIHRCNISPLGDLTDV-MTFLGRPWK NFS--------------TTVIMDSYLHGFIDrkGWLPWTGDSA------- -PDTIFYGEYKNTGPGASTKNRVKWKGLrflstKEANRFTVKPFIDGGRW LP-atkvpfrsgl >gi|7529744|emb|CAB86929.1|_224:518 (AL163527) pectinesterase precursor-like protein [Arabidopsis thaliana] ltnsldmfvsdkqksssssnltggrkllsdhdfptwvsssdrklleasve ELRPHAVVAADGSG--THMSVAEALASLEKGSGRSVIHLTAGTYKENLNI PskQKNVMLVGDGKGKTVIVGS------RSNRGGWNTYQSATVAAMGDGF IARDITFVNSAG--------------PNSEQAVALRV--GSDRSVVYRCS IDGYQDSLYTLSKRQFYRETDITGTVDFIFGNSAVVFQSCNLVSRKGSSD Q-----NYVTAQGRsDPNQNTGISIHNCRITGST------KTYLGRPWKQ YS--------------RTVVMQSFIDGSIHpsGWSPWSSNFA-------- LKTLYYGEFGNSGPGSSVSGRVSWAGYhpaltlTEAQGFTVSGFIDGNSW LP-stgvvfdsgll >gi|7447390|pir||T05203_292:592 pectinesterase homolog F4I10.160 - Arabidopsis thalianagi|4455337|emb|CAB36797.1| (AL035525) pectinesterase-like protein [Arabidopsis thaliana]gi|7270271|emb|CAB80040.1| (AL161583) pectinesterase-like protein [Arabidopsis thaliana] iksldgylssvpkvktrlllearssaketdhitswlsnkerrmlkavdvk ALKPNATVAKDGSG--NFTTINAALKAMPAKYQgRYTIYIKHGIYDESVI IDkkKPNVTMVGDGSQKTIVTGN------KSHAKKIRTFLTATFVAQGEG FMAQSMGFRNTAG--------------PEGHQAVAIRV--QSDRSVFLNC RFEGYQDTLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLP GQK----NTVTAQGRvDKFQTTGFVIHNCTVAPNEDLKPVKaqfKSYLGR PWKPHS--------------RTVVMESTIEDVIDpvGWLRWQeTDFA--- -----IDTLSYAEYKNDGPSGATAARVKWPGFrvlnkEEAMKFTVGPFLQ G------ewiqaigspvklglyda >gi|7447368|pir||S72525_1:303 pectinesterase (EC 3.1.1.11) gamma - mung bean (fragment) -VKANVVVAQDGSG--KFKTVTEAVASAPDNGKtRYVIYVKKGTYKEHVE IGkkKKNIMLVGDGMDATIITGS------LNFIDGTTTFNSATVAAVGDG FIGQDI-FQNTAG--------------AAKHQAVALRV--GADQSVINRC RIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPMS NQK----NMVTAQGReDPNQNTGTS-QQCNLTPSSDLKAVVgsiKTYLGR PWKKYS--------------RTVIMQSSIDSHIDptGWAEWDaqSKDF-- ------LQTLYYGEYMNSGAGAGTSKRVNWPGYhiitsaAEASKF-VTQL IQGNVWL--kntgvnfiegl >gi|7447376|pir||T00978_179:481 pectinesterase homolog T9J22.12 - Arabidopsis thalianagi|2739370|gb|AAC14494.1| (AC002505) putative pectinesterase [Arabidopsis thaliana] vltsnslaliktftenlspvmkvverhllddipswvsnddrrmlravdvk ALKPNATVAKDGSG--DFTTINDALRAMPEKYEgRYIIYVKQGIYDEYVT VDkkKANLTMVGDGSQKTIVTGN------KSHAKKIRTFLTATFVAQGEG FMAQSMGFRNTAG--------------PEGHQAVAIRV--QSDRSIFLNC RFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLP GQK----NTVTAQGRvDKFQTTGFVVHNCKIAANEDLKPVKeeyKSYLGR PWKNYS--------------RTIIMESKIENVIDpvGWLRWQeTDFA--- -----IDTLYYAEYNNKGSSGDTTSRVKWPGFkvinkEEALNYTVGPFLQ GDW----isasgspvklglyda >gi|7447387|pir||T02184_272:577 pectinesterase homolog F14M4.14 - Arabidopsis thalianagi|3522959|gb|AAC34241.1| (AC004411) putative pectinesterase [Arabidopsis thaliana] espvadpdgparrlledidetgiptwvsgadrklmakagrgrrggrggga RVRTNFVVAKDGSG--QFKTVQQAVDACPENNRgRCIIYIKAGLYREQVI IPkkKNNIFMFGDGARKTVISYN------RSVAlsRGTTTSLSATVQVES EGFMAKWMGFKNTAG--------------PMGHQAAAIRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKG SKGQY----NTVTADGNelGLGMKIGIVLQNCRIVPDRKLTPERltvATY LGRPWKKFS--------------TTVIMSTEMGDLIRpeGWKIWDGESF- -------HKSCRYVEYNNRGPGAFANRRVNWAKVarsaAEVNGFTAANWL GPINWI--qeanvpvtigl >gi|7447388|pir||T01347_162:465 pectinesterase homolog F6N15.23 - Arabidopsis thalianagi|3193313|gb|AAC19295.1| (AF069299) contains similarity to pectinesterase [Arabidopsis thaliana]gi|7267106|emb|CAB80777.1| (AL161471) putative pectinesterase [Arabidopsis thaliana] emselgvsshslesitidvintlainkrmeqngkefgiskitmktlsige --KVDVVVAQDGSG--DYKTIQEAVNGAGERLKgspRYVIHVKQGVYEEY VNVGikSNNIMITGDGIGKTIITGD------KSKGRGFSTYKSATFVAEG DGFVGRDITIRNTAG--------------PENHQAVALRS--NSDMSVFY RCSIEGYQDTLYVHSGRQFFRECDIYGTVDFIFGNAAAVLQNCRIFARNP -----PNGVNTITAQSRfNPNQTTGIVIHNSVVKGAPGVQLGGvKTYLGR PWRSYA--------------RTVVIGTYLDTLIEpnGWIDWDNVTA---- ----LSTLYYGEYQNSGPGSGTENRVDWAGFhvisdiQEAREFTLPKFID SASWLPPtkvpftinl >gi|6093743|sp|Q43043|PME_PETIN_56:357 PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|7447378|pir||S78041 pectinesterase (EC 3.1.1.11) PPE1 precursor - Petunia inflatagi|533256|gb|AAA33714.1| (L27101) pectinesterase [Petunia integrifolia] nstrelsinalsmlnsfgdmvaqatglnrkllttdssdatarrllqisna --KPNATVALDGSG--QYKTIKEALDAVPKKNTePFIIFIKAGVYKEYID IPksMTNVVLIGEGPTKTKITGN------KSVKDGPSTFHTTTVGVNGAN FVAKNIGFENTAG--------------PEKEQAVALRV--SADKAIIYNC QIDGYQDTLYVHTYRQFYRDCTITGTVDFIFGNGEAVLQNCKVIVRKPAQ NQS----CMVTAQGRtEPIQKGAIVLQNCEIKPDTDYFSLSppsKTYLGR PWKEYS--------------RTIIMQSYIDKFIEpeGWAPWNITNF---- ---GRDTSYYAEYQNRGPGAALDKRITWKGFqkgftgEAAQKFTAGVYIN NDE----nwlqkanvpyeagmmkv >gi|7485174|pir||G71425_388:692 hypothetical protein - Arabidopsis thalianagi|2244956|emb|CAB10377.1| (Z97340) pectinesterase like protein [Arabidopsis thaliana]gi|7268346|emb|CAB78640.1| (AL161542) pectinesterase like protein [Arabidopsis thaliana] nrpldplrklnplnkldslkdrhlseegefppwvtphsrrllarrprnng -IKANVVVAKDGSG--KCKTIAQALAMVPMKNTkKFVIHIKEGVYKEKVE VTkkMLHVMFVGDGPTKTVITGD------IAFLpDQVGTYRTASVAVNGD YFMAKDIGFENTAG--------------AARHQAVALRV--SADFAVFFN CHMNGYQDTLYVHTHRQFYRNCRVSGTIDFVFGDAKAVFQNCEFVIRRPM EHQQ----CIVTAQGRkDRRETTGIVIHNSRITGDASYLPVKaknRAFLG RPWKEFS--------------RTIIMNTEIDDVIDpeGWLKWNETFA--- -----LNTLFYTEYRNRGRGSGQGRRVRWRGIkrisdRAAREFAPGNFLR GNTWIP-qtripynan >gi|7447389|pir||T01418_217:521 pectinesterase homolog T2H3.6 - Arabidopsis thalianagi|3377801|gb|AAC28174.1| (AF075597) contains similarity to pectinesterases [Arabidopsis thaliana]gi|7268990|emb|CAB80723.1| (AL161494) putative pectinesterase [Arabidopsis thaliana] ldisnnlsnslhmlqvisrkkpspkssevdveypswlsendqrlleapvq ETNYNLSVAIDGTG--NFTTINDAVFAAPNMSEtRFIIYIKGGEYFENVE LPkkKTMIMFIGDGIGKTVIKAN------RSRIDGWSTFQTPTVGVKGKG YIAKDISFVNSAG--------------PAKAQAVAFRS--GSDHSAFYRC EFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVFQNSSLYARKPNP GHK----IAFTAQSRnQSDQPTGISILNCRILAAPDLIPVKenfKAYLGR PWRKYS--------------RTVIIKSFIDDLIHpaGWLEGKKDFA---- ----LETLYYGEYMNEGPGANMAKRVTWPGFrrienqTEATQFTVGPFID GSTWL--nstgipfslgf >gi|3342904|gb|AAC27719.1|_272:575 (AF077855) flower-specific pectin methylesterase precursor [Arabidopsis thaliana] espvadpdgparrlledidetgiptwvsgadrklmakagrgrrggrggga RVRTNFVVAKDGSG--QFKTVQQAVDACPENNRgRCIIYIKAGLYREQVI IPkkKNNIFMFGDGARKTVISYN------RSVALSRGTTTSLSATVESEG FMAKWMGFKNTAG--------------PMGHQAAAIRV--NGDRAVIFNC RFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSK GQY----NTVTADGNelGLGMKIGIVLQNCRIVPDRKLTPERltvATYLG RPWKKFS--------------TTVIMSTEMGDLIRpeGWKIWDGESF--- -----HKSCRYVEYNNRGPGAFANRRVNWAKVarsaAEVNGFTAANWLGP INWI--qeanvpvtigl >gi|6093739|sp|Q43111|PME3_PHAVU_271:571 PECTINESTERASE 3 PRECURSOR (PECTIN METHYLESTERASE 3) (PE 3)gi|1076515|pir||S53105 pectinesterase precursor - kidney beangi|732913|emb|CAA59482.1| (X85216) pectinesterase [Phaseolus vulgaris] fasnslaivtkilgllsrfetpihhrrllgfpewlgaaerrlleeknnds --TPDAVVAKDGSG--QFKTIGEALKLVKKKSEeRFSVYVKEGRYVENID LDknTWNVMIYGDGKDKTFVVGS------RNFMDGTPTFETATFAVKGKG FIAKDIGFVNNAG--------------ASKHQAVALRS--GSDRSVFFRC SFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLP NQF----NTITAQGKkDPNQNTGIIIQKSTITPFGNNLTA-PTYLGRPWK DFS--------------TTVIMQSDIGALLNpvGWMSWVPNVE------- PPTTIFYAEYQNSGPGADVSQRVKWAGYkptitdRNAEEFTVQSFIQGPE WLP-naavqfdstl >gi|7447391|pir||T01870_215:525 probable pectinesterase (EC 3.1.1.11) - Arabidopsis thalianagi|3319371|gb|AAC28220.1| (AF077409) Similar to pectinesterase; T24M8.6 [Arabidopsis thaliana]gi|7267148|emb|CAB80816.1| (AL161498) putative pectinesterase [Arabidopsis thaliana] kakvalalfisisprdntelnsvvpnspswlshvdkkdlylnaeqalkki ---ADVVVAKDGTG--KYNTVNAAIAAAPQHSHkRFIIYIKTGIYDEIVA IEntKPNLTLIGDGQDSTIITGN------LSASNVRRTFYTATFdnsnyt knmfeASNGKGFIGVDMCFRNTVG--------------PAKGPAVALRV- -SGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQ FCQIVARQPNMGQS----NFITAQSReTKDDKSGFSIQNCNITASSDLDT ATvKTYLGRPWRIFS--------------TVAVLQSFIGDLVDpaGWTPW EGETG--------LSTLHYREYQNRGPGAVTSRRVKWSGFkvmkdpKQAT EFTVAKLLDGETWL--kesripyksgl >gi|5922617|dbj|BAA84618.1|_300:598 (AP000492) EST C97105(C52004) corresponds to a region of the predicted gene.; similar to pectinesterase. (X95991) [Oryza sativa]gi|6016850|dbj|BAA85193.1| (AP000570) EST C97105(C52004) corresponds to a region of the predicted gene.; Similar to pectinesterase. (X95991) [Oryza sativa] ngtadgaaaggddtgpssdlppwvtdvvndveeevtatrgrgrssssgrk AMRVDVVVAQDGSG--RWRTVSEAVARAPSHSRrRYVIYVKRGVYEENVE VRkkKTNIVIVGEGMGETVITGS------RSMAAGWTTFRSATFAVSGAG FIARDMTIRNTAG--------------PAAHQAVALRV--DSDRSAFFRI AVEGHQDTLYAHSLRQFYRDCRVSGTVDFIFGNGIAVIQRTTISTLPPAA GQN---AGSVTAQGRrDPNQNTGFALHACIVEAKY------PTYLGRPWK PFS--------------RVVVMESYLGAGVQprGWLEWDGDGG------- ELATLFYGEYRNYGPGANIGGRVRWPGYhvimdaAVAVRFTVRRFIDGLA WLP-stgvtftadlnrk >gi|6093736|sp|Q43867|PME1_ARATH_277:577 PECTINESTERASE 1 PRECURSOR (PECTIN METHYLESTERASE 1) (PE 1)gi|1076365|pir||S51370 pectinesterase (EC 3.1.1.11) PME1 precursor - Arabidopsis thalianagi|2129666|pir||JC4778 pectinesterase (EC 3.1.1.11) PME1 precursor - Arabidopsis thalianagi|550306|emb|CAA57275.1| (X81585) ATPME1 [Arabidopsis thaliana]gi|903895|gb|AAC50024.1| (U25649) ATPME1 precursor [Arabidopsis thaliana]gi|6056393|gb|AAF02857.1|AC009324_6 (AC009324) Pectinesterase 1 [Arabidopsis thaliana] nslaivskilsalsdlgipihrrrrlmshhhqqsvdfekwarrrllqtag -LKPDVTVAGDGTG--DVLTVNEAVAKVPKKSLkMFVIYVKSGTYVENVV MDksKWNVMIYGDGKGKTIISGS------KNFVDGTPTYETATFAIQGKG FIMKDIGIINTAG--------------AAKHQAVAFRS--GSDFSVYYQC SFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLS NQF----NTITAQGKkDPNQSSGMSIQRCTISANGNVIA--PTYLGRPWK EFS--------------TTVIMETVIGAVVRpsGWMSWVSGVD------- PPASIVYGEYKNTGPGSDVTQRVKWAGYkpvmsdAEAAKFTVATLLHGAD WIP-atgvinqls >gi|7447386|pir||T02183_279:584 pectinesterase homolog F14M4.13 - Arabidopsis thalianagi|3522958|gb|AAC34240.1| (AC004411) putative pectinesterase [Arabidopsis thaliana] vaddspvadpdgparrlledidetgiptwvsgadrklmtkagrgsndgga RIRATFVVAKDGSG--QFKTVQQAVNACPEKNPgRCIIHIKAGIYREQVI IPkkKNNIFMFGDGARKTVISYN------RSVKlsPGTTTSLSGTVQVES EGFMAKWIGFKNTAG--------------PMGHQAVAIRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKG NKGQF----NTVTADGNekGLAMKIGIVLQNCRIVPDKKLAAERlivESY LGRPWKKFS--------------TTVIINSEIGDVIRpeGWKIWDGESF- -------HKSCRYVEYNNRGPGAITNRRVNWVKIarsaAEVNDFTVANWL GPINWI--qeanvpvtlgl >gi|6093122|emb|CAB58974.1|_279:584 (AJ250430) pectin methylesterase [Arabidopsis thaliana] vaddspvadpdgparrlledidetgiptwvsgadrklmakagrgsndgga RIRATFVVAKDGSG--QFKTVQQAVNACPEKNPgRCIIHIKAGIYREQVI IPkkKNNIFMFGDGARKTVISYN------RSVKlsPGTTTSLSGTVQVES EGFMAKWIGFKNTAG--------------PMGHQAVAIRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKG NKGQF----NTVTADGNekGLAMKIGIVLQNCRIVPDKKLAAERlivESY LGRPWKKFS--------------TTVIINSEIGDVIRpeGWKIWDGESF- -------HKSCRYVEYNNRGPGAITNRRVNWVKIarsaAEVNDFTVANWL GPINWI--qeanvpvtlgl >gi|7447382|pir||T12995_278:584 pectinesterase homolog T21L8.150 - Arabidopsis thalianagi|5541707|emb|CAB51212.1| (AL096860) pectinesterase-like protein [Arabidopsis thaliana] sdlignclavngvlmkqhdhtttanhkeyfpswvsrherrllvsaslaks --SPHLVVAQDRSG--HFRSIQAAINFAARRRFksRFVIYVKKGVYRENI DVGndNHNIMLVGDGERKTIITSG------RSVQHGYTTYNSATGGFGGQ RFVAKDMTFINTAG--------------PLRGQAVAVRS--SSDLSVFYR VGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPL HGQA----NIITAQGRgDPFQNTGITIHSSRIIAASDLKPVIrayKTYLG RPWQAYS--------------RVTIMKTYIDNSISplGWSPWLrgSNFA- -------LNTVFYGEYKNFGPGSSTRWRVRWKGFhaitstAVASRFTVGS LIAGGSWLP-atgvpfksgl >gi|130346|sp|P07863|PMEA_ERWCH_25:366 PECTINESTERASE A PRECURSOR (PECTIN METHYLESTERASE A) (PE A)gi|78269|pir||S03770 pectinesterase (EC 3.1.1.11) precursor - Erwinia chrysanthemigi|42443|emb|CAA68628.1| (Y00549) PME precursor (AA -24 to 342) [Erwinia chrysanthemi] mlktisgtlalsliiaasvhqaqaATTYNAVVSKSSSDGKTFKTIADAIA SAPAGSTPFVILIKNGVYNERLTITRNNLLLKGESRNGAVIAAATAAGTL KSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIK DTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDF IFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSR VIRESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVSKDRRQLTDAQAA EYTQSKVLGDWTPTLP >gi|478290|pir||JN0799_25:366 pectinesterase (EC 3.1.1.11) precursor - Erwinia chrysanthemigi|148466|gb|AAA24852.1| (L07644) pectin methylesterase [Pectobacterium chrysanthemi] mlktisgtlalsliiaasvhqaqaATTYNAVVSKSSSDGKTFKTIADAIA SAPAGSTPFVILIKNGVYNERLTITRNNLHLKGESRNGAVIAAATAAGTL KSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIK DTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDF IFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSR VIRESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLTDAQAA EYTQSKVLGDWTPTLP >gi|1172538|sp|P41510|PME_BRANA_268:573 PROBABLE PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|99823|pir||S14952 pectinesterase homolog - rapegi|17784|emb|CAA39658.1| (X56195) Bp19 [Brassica napus] papdrdlledldqkglpkwhsdkdrklmaqagrpgapadegigegggggg KIKPTHVVAKDGSG--QFKTISEAVKACPEKNPgRCIIYIKAGVYKEQVT IPkkVNNVFMFGDGATQTIITFD------RSVGlsPGTTTSLSGTVQVES EGFMAKWIGFQNTAG--------------PLGHQAVAFRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKG SPGQT----NHVTADGNekGKAVKIGIVLHNCRIMADKELEADRltvKSY LGRPWKPFA--------------TTAVIGTEIGDLIQptGWNEWQGEKF- -------HLTATYVEFNNRGPGANTAARVPWAKMaksaAEVERFTVANWL TPANWI--qeanvpvqlgl >gi|6899927|emb|CAB71877.1|_272:577 (AL138651) PECTINESTERASE-like protein [Arabidopsis thaliana] gaarrlledndskglpkwfsgkdrklmakagrgapaggddgigegggggg KIKATHVVAKDGSG--QFKTISEAVMACPDKNPgRCIIHIKAGIYNEQVR IPkkKNNIFMFGDGATQTIITFD------RSVKlsPGTTTSLSGTVQVES EGFMAKWIGFKNTAG--------------PLGHQAVALRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKG SPGQS----NYVTADGNekGAAMKIGIVLHNCRIIPDKELEADKltiKSY LGRPWKKFA--------------TTVIIGTEIGDLIKpeGWTEWQGEQN- -------HKTAKYIEFNNRGPGAATTQRPPWVKVaksaAEVETYTVANWV GPANWI--qeanvpvqlgl >gi|7671413|emb|CAB89354.1|_237:546 (AL353994) pectin methylesterase-like protein [Arabidopsis thaliana] lsmmvsydnfgdnvaswtypaterdgfwektgpglgldpstglnlgfpsg -LKEDVTVCKDGKC--GYKTVQDAVNAAPEDNGmrKFVIKISEGVYEENV IVPfeKKNVVFIGDGMGKTVITGS------LNAGmPGITTYNTATVGVVG DGFMARDLTFQNTAG--------------PDAHQAVAFRS--DSDFSLIE NCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPR QINPEKGEKNAVTAQGRiDPSQSTGFVFLNCLINGTEEYMKLFkanpkvh KNFLGRPWKDYS--------------RTVFIGCNLEALITpdGWLPWSGD FA--------LKTLYYGESKNTGPGSDRSQRVSWSSQipdEHVHVYSVAN FIQADEW---asmsa >gi|6688851|emb|CAB65290.1|_228:527 (AJ249611) pectin methyl-esterase PER [Medicago truncatula] ntsiqlssnaidmvdavydltnakrrllsldngyplwvsegqrrllaeat -VKPNVVVAQDGSG--QFKTLTDAIKTVPANNAqNFVIYVKEGVYNETVN VPkdMAFVTIIGDGPAKTKFTGS------LNYADGLLPYNTATLGVNGEN FMAKDISIENTAG--------------PEKHQAVALRV--TADKAIFYNC QIDGYQATLFAESQRQFYRDCSISGTIDMIYGDAFAVFQNCKLIVRKPLE EQQ----CFVAADGRtKSDSSSGFVFQSCHFTGEPEVAKIDpkIAYLGRP WKSYS--------------KVVIMDSNIDDIFDpeGYMPWMGSAF----- ---KDTCTFYEYNNKGPGADTSKRVKWPGVksissTEAAAFYPGKFFEIA N----atdrdtwivksgvpyslaaldatsnqgatpgqgtvtgtgagaegp apaeg >gi|7489092|pir||T16977_5:263 pectinesterase (EC 3.1.1.11) isoform 4 - curled-leaved tobacco (fragment)gi|1279602|emb|CAA96436.1| (Z71754) pectin methylesterase [Nicotiana plumbaginifolia] aita---------------------------------------------- NVEIGkkKKNVMLVGDGMDATIITGN------LNVVDGATTFNSATVAAV GDGFIAQDVQFQNTAG--------------AAKHQAVALRV--GAGQSVI NRCKIDAFQDTLYTHSLRQFYRDCYITGTVDFIFGNAAVVFQNSKIAARK PGSGQK----NMVTAQGReDPNQNTGTSIQNCDIIPSSDLAPVKgsvKTY LGRPWKAYS--------------RTVFMQSNIGDHIDpeGWSVWDGDFA- -------LKTLYYGEYMNKGPGAGTSKRVKWPGYhilsaAEATKFTVGQL IQGGVWL--kstgvaytegl >gi|6048277|emb|CAB57457.2|_2:265 (AJ249786) pectin methylesterase [Nicotiana tabacum] k---------------------------------RYVIRIKAGVYRENVD VPkkKTNIMFMGDGRSNTIITGS------RNVKDGSTTFNSATVAAVGEK FLARDITFQNTAG--------------AAKHQAVALRV--GSDLSAFYRR DILAYQDSLYVHSNRQYFVQCLIAGTVDFIFGNAAAVLQNCDIHARRPGS GQK----NMVTAQGRtDPNQNTGVVIQNCRIGATSDLRPVQksfPTYLGR PWKEYS--------------RTVIMQSSITDVINsaGWHEWNGNFA---- ----LNTLFYGEYQNTGAGAGTSGRVKWRGFkvitsaTEAQAYTPG---- -------r >gi|6093741|sp|Q42608|PME_BRACM_255:560 PECTINESTERASE (PECTIN METHYLESTERASE) (PE)gi|1448939|gb|AAB04617.1| (L48178) pectinesterase [Brassica rapa] papdrdlledldqkglpkwhsdkdrklmaqagrpgapadegigegggggg KIKPTHVVAKDGSG--QFKTISEAVKACPEKNPgRCIIYIKAGVYKEQVT IPkkVNNVFMFGDGATQTIITFD------RSVGlsPGTTTSLSGTVQVES EGFMAKWIGFQNTAG--------------PLGNQAVAFRV--NGDRAVIF NCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKG SPGQT----NHVTADGKqkGKAVKIGIVLHNCRIMADKELEADRltvKSY LGRPWKPFA--------------TTAVIGTEIGDLIQptGWNEWQGEKF- -------HLTATYVEFNNRGPGANPAARVPWAKMaksaAEVERFTVANWL TPANWI--qeanvtvqlgl >gi|6554192|gb|AAF16638.1|AC011661_16_214:540 (AC011661) T23J18.25 [Arabidopsis thaliana] srarialalfisisprdntelisvipnspswlfhvdkkdlylnaealkki ---ADVVVAKDGTG--KYSTVNAAIAAAPQHSQkRFVIYIKTGIYDEIVV IEntKPNLTLIGDGQDLTIITSN------LSASNVRRTFNTATVgknffl ffipnynilkditnysrnifeASNGNGFIGVDMCFRNTAG---------- ----PAKGPAVALRV--SGDMSVIYRCRVEGYQDALYPHSDRQFYRECFI TGTVDFICGNAVAVFQFCQIVARQPKMGQS----NVITAQSRaFKDIYSG FTIQKCNITASSDLDTTTvKTYLGRPWRIFS--------------TVAVM QSFIGDLVDpaGWTPWEGETG--------LSTLHYREYQNRGPGAVTSRR VKWSGFkvmkdpKQATEFTVAKLLDGETWL--ketripyesgl >gi|7025485|gb|AAF35897.1|AF229849_1_1:265 (AF229849) pectin methylesterase isoform alpha [Vigna radiata] -----------------------------------------GAYFENVEV IrrKTNLMWVGDGIGKTVVKAS------RNVVDGWTTFQSATVAVVGDGF IAKGVTFENSAG--------------PSKHQAVALRN--GADFSAFYQCS FVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNKN QR----NLFTAQGReDPNQSTGISIINCKVAAAADLIPVKsefRNYLGRP WKMYS--------------RTVFLNSLMEDLIEpaGWLEWNGTFA----- ---LDTLYYGEYNNRGPGANTSGRVTWPGYrvitnsTEASQFTVQNFIQG NEWL--nsygipffsglt >gi|6093742|sp|Q42920|PME_MEDSA_128:424 PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE) (P65)gi|7447377|pir||T09414 pectinesterase homolog - alfalfagi|886130|gb|AAA91128.1| (U28148) putative pectinesterase [Medicago sativa] snaidmmdavsrilkgfdtsqysvsrrllsddgipswvndghrrllaggn -VQPNAVVAQDGSG--QFKTLTDALKTVPPKNAvPFVIHVKAGVYKETVN VAkeMNYVTVIGDGPTKTKFTGS------LNYADGINTYNTATFGVNGAN FMAKDIGFENTAG--------------TGKHQAVALRV--TADQAIFYNC QMDGFQDTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAK GQQ----CLVTAGGReKQNSASALVFQSSHFTGEPALTSVTpkVSYLGRP WKQYS--------------KVVIMDSTIDAIFVpeGYMPWMGSAF----- ---KETCTYYEYNNKGPGADTNLRVKWHGVkvltsNVAAEYYPGKFFE-- -----ivnatardtwivksgvpyslgpm >gi|6688852|emb|CAB65291.1|_246:542 (AJ249611) pectin methyl-esterase PEF1 [Medicago truncatula] snaidmmdvvsrilkgfhpsqygvsrrllsddgipswvsdghrhllaggn -VKANAVVAQDGSG--QFKTLTDALKTVPPTNAaPFVIYVKAGVYKETVN VAkeMNYVTVIGDGPTKTKFTGS------LNYADGINTYKTATFGVNGAN FMAKDIGFENTAG--------------TSKFQAVALRV--TADQAIFHNC QMDGFQDTLFVESQRQFYRDCAISGTIDFVFGDAFGVFQNCKLICRVPAK GQK----CLVTAGGRdKQNSASALVFLSSHFTGEPALTSVTpkLSYLGRP WKLYS--------------KVVIMDSTIDAMFApeGYMPMVGGAF----- ---KDTCTFYEYNNKGPGADTNLRVKWHGVkvltsNVAAEYYPGKFFE-- -----ivnatardtwivksgvpyslgpm >gi|6554203|gb|AAF16649.1|AC011661_27_43:318 (AC011661) T23J18.3 [Arabidopsis thaliana] mamtstmqllvlsflviaslflgatvappaslistpdqalkd--KADLIV AKDGSG--NFTTVNEAVAAAPENGVkPFVIYIKEGLYKEVIRIGkkKTNL TLVGDGRDLTVLSGD------LNGVDGIKTFDSATLAVDESGFMAQDLCI RNTAG--------------PEKRQAVALRI--STDMTIIYRCRIDAYQDT LYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQT----N ILTAQSReEDTATSGFSFQKCNISASSDLTPIKgtvKTFLGRPWRAFS-- ------------RVVFMESFIDDVIDr----------------------- ----------ADTSKRVGWKGYhtitlNEATSFTVEKLLQGHLWI--nai fflvfvvsasarfstevtkseinsicthtdvdaslcfeflnsspqia >gi|2388565|gb|AAB71446.1|_87:386 (AC000098) Similar to Prunus pectinesterase (gb|X95991). [Arabidopsis thaliana] sysfkkslcdhhhhhhhhhhhhhrhkpsdtkrkvsicddfpknippldtd -TTSYLCVDKNGCC--NFTTVQSAVDAVGNFSQrRNVIWINSGI--EKVV IPktKPNITLQGQGFDITAIAWN------DTAYSANGTFYCATVQVFGSQ FVAKNISFMNVAPIPKPG---------DVGAQAVAIRI--AGDESAFVGC GFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMaNQL SPGSKAVNGAVTANGRsSKDENSGFSFVNCTIGGTG------HVWLGRAW RPYS--------------RVVFVSTTMTDVIApeGWNNFNDPSR------ --DATIFYGEYNCSGPGADMSKRAPYVQKlneTQVALLINTSFIDGDQWL --qfsdl >gi|1552379|emb|CAA69348.1|_93:375 (Y08155) pectin methylesterase [Silene latifolia ssp. alba] tgsgnlllgtgmlhpqliswvwlwmprclrtgptgvirayktrltapenl -----------------------------KGGDRFVIRIKEGVYEETVRA GfyKTNLVFLGDGMGKTVITGS------ISTGiTRITTYNTATVGILGDG FMASGLTIENTAG--------------PDAHQAVAFRS--DSDFSYIENC EFLGNQDTIYVHSLRQLFKSCRIEGNVDFIFGNAAAIFQDCTILVRPRQV KPEKGETNAIAAHGRtDPAQTTGFAFLGCLINGTDDYMKLYhskpskhKN YLGRPWKMYS--------------RTVYINCTMESLIApeGWLPWSGDFA --------LSTLYYGEFGNSGPGANVSSRVPWSRLvpeEHVSTYYVENFL QGDEWI--ttas >gi|4415915|gb|AAD20146.1|_44:333 (AC006282) putative pectinesterase [Arabidopsis thaliana] mlffilflsiispiesvdqrihhpskcdhlskfptkgftmvlk------- VSLNGCG--RFKRVQDAIDASIGSSQsKTLILIDFGIYRERFIVHenKNN LVVQGMGYSRTSIEWN------NTTASSNGTFSSFSVAVFGEKFTAYNIS FKNTAPAPNPG---------AVDAQAVALKV--VGDKAAFYGCGFYGNQD TLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSI-----AKENTI GCITANGKdTLKDRTGFVFVNCKITGSA------RVWLGRAWRPYA---- ----------RVIFSKTYMSRVVSldGWNDMGDPKT--------QRTVYY GEHRCYGPGANHSKRVTYAKLlsdVEAAPFTNISFIDGEEWL-- >gi|7576181|emb|CAB87932.1|_62:357 (AL163912) pectin methyl-esterase-like protein [Arabidopsis thaliana] lvvfaspvvlatdtdpipenraqipqwfktnvkpysqrkgtldpaleaae --AARQIITVNQKGGANFKTLNEAIKSIPTGNKnRVIIKLAPGVYNEKVT IDiaRPFITLLGQPGAETVLTYH-------GTAAQYGTVESATLIVWAEY FQAAHLTIKNTAPMPKPG----------SQGQALAMRI--NADKAAFYSC RFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAV---- ---GDGLRVITAQGRqSATEQNGYTFVHCKVTGTGT-----GIYLGRSWM SHP--------------KVVYAFTEMTSVVNpsGWRENLNRGY------- -DKTVFYGEYKCFGPGSHLEKRVPYTQDidkNEVTPFLTLGYIKGSTWLL Pppky >gi|7447363|pir||T07183_1:220 probable pectinesterase (EC 3.1.1.11) BPE2 - potato (fragment)gi|1321997|emb|CAA66361.1| (X97763) pectin methylesterase [Solanum tuberosum] -----AVVAKDGTG--DYQTLAEAVAAAPDRSKtRYVIYVKMGIYKENVE VTsrKMNLMIVGDGMNATIITGS------LNFVDGTTTFRSATLAAVGQG FILQDICIQNTAG--------------PEKHQAVALRI--GGDMSVINRC RIDAYQDTLYAHSQRQFYRDSYVSGTIDFIFGNAAVVFQKCQLVARKPSK YQK----NMVTAQGRtDPNQATGTSIQFCDIIASPDLEPVVnefKTYLGR PWK----------------------------------------------- ------------------------------------------------- >gi|7447362|pir||T07181_1:217 probable pectinesterase (EC 3.1.1.11) BPE1 - potato (fragment)gi|1321995|emb|CAA66360.1| (X97762) pectin methylesterase [Solanum tuberosum] --------AKDGSG--KYKTLLEAVASAPDNSKtRFVIYVKKGTYKENVE IGkkKKNIMLVGDGMDATIITGN------LNVIDGSTTFKSATVAAVGDG FIAQDLQFQNTAG--------------PQKHQAVALRV--GADQSVINRC KIDAFQDTLYTHTLRQFYRDCYITGTVDFIFGNAAVVFQNSKLAARKPMS GQK----NMVTAQGReDPNQVTGTSIQNCDIIPSSDLAPVKgsvKTYLGR PWK----------------------------------------------- ------------------------------------------------- >gi|4415916|gb|AAD20147.1|_86:386 (AC006282) putative pectinesterase [Arabidopsis thaliana] ttigalakystffghkhhhhhhhhhhhhhyhhhepikccekwtsrlrhqy KTSLVLTVDLHGCG--NFSNVQSAIDVVPDLSSsKTLIIVNSGSYREKVT VNenKTNLVIQGRGYQNTSIEWN------DTAKSAGNTADSFSFVVFAAN FTAYNISFKNNAPEPDPG---------EADAQAVALRI--EGDQAAFYGC GFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSI--AK GNTSGVTGSITAQGRqSEDEQSGFSFVNCKIDGSG------EILLGRAWG AYA--------------TVVFSNTYMSGIITpeGWNNWGDSTK------- -EKTVTFGEHKCYGPGADYKERVLFGKQltdSEASSFIDVSFIDGDEWLR -htnivsehtskdigddligfy >gi|7576179|emb|CAB87930.1|_43:338 (AL163912) pectin methyl-esterase-like protein [Arabidopsis thaliana] mvfaddltpipegkpqvvqwfnthvgplaqrkgldpalvaae--AAPRII NVNPKGG-EFKTLTDAIKSVPAGNTkRVIIKMAHGEYREKVTIDrnKPFI TLMGQPNAMPVITYD-------GTAAKYGTVDSASLIILSDYFMAVNIVV KNTAPAPDGK---------TKGAQALSMRI--SGNFAAFYNCKFYGFQDT ICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVV-------GDGIR VIAAHAGkSAEEKSGYSFVHCKVTGTGG-----GIYLGRAWMSHP----- ---------KVVYAYTEMTSVVNptGWQENKTPAH--------DKTVFYG EYKCSGPGSHKAKRVPFTQDiddKEANCFLSLGYIQGSKWLLPppal >gi|6358800|gb|AAF07380.1|AC010675_3_50:334 (AC010675) putative pectin methylesterase [Arabidopsis thaliana] mvfaddvtpipegkpqvaqwfnanvgplaqrkgldpalvaaeaapriin- -------------GGEFKTLTDAIKSVPAGNTkRVIIKMAPGEYKEKVTI DrnKPFITLMGQPNAMPVITYD-------GTAAKYGTVDSASLIILSDYF MAVNIVVKNTAPAPDGK---------TKGAQALSMRI--SGNFAAFYNCK FYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVV----- --GDGIRVIAAHAGkSAEEKSGYSFVHCKVTGTGG-----GIYLGRAWMS HP--------------KVVYAYTEMTSVVNptGWQENKTPAH-------- DKTVFYGEYKCSGPGSHKAKRVPFTQDiddKEANRFLSLGYIQGSKWLLP ppal >gi|100008|pir||S25171_1:218 pectinesterase (EC 3.1.1.11) - kidney bean (fragment)gi|21060|emb|CAA48170.1| (X68029) pectinesterase [Phaseolus vulgaris] -----AVVAKDGSG--KFKTVAEAVASAPDNR-RYVIYVKKGTYKENVEI GkkKKNVMLVGDGKDLTVITGS------LNYIDGTGTFQTATVAAVGDGF IGQDIWFQNTAG--------------PQKHQAVALRV--GADQSVINRCR VDAYQDTLYAHTNRQFYRDSFITGTVDFIFGNAAVVFQKCYLVARKPMSN QK----NMVTAQGReDPNQSTGTSIQQCNITPSLDLKPVAgsiKTYLGRP WK------------------------------------------------ ------------------------------------------------ >gi|7576180|emb|CAB87931.1|_67:357 (AL163912) pectin methyl-esterase-like protein [Arabidopsis thaliana] spvvladditpipadraqipqwfmanvkpfsqrrgtldpeleaaeasrrv -----IIVNQNGGG--DFKTINAAIKSIPLANKnRVIIKLAPGIYHEKVT VDvgRPYVTLLGKPGAETNLTYA-------GTAAKYGTVESATLIVWATN FLAANLNIINTSPMPKPG----------TQGQALAMRI--NGDKAAFYNC RFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHAV---- ---GDGLRVIAAHNRqSTTEQNGYSFVHCKVTGVGT-----GIYLGRAWM SHP--------------KVVYSYTEMSSVVNpsGWQENRVRAH------- -DKTVFYGEYMCTGPGSHKAKRVAHTQDidnKEASQFLTLGYIKGSKWLL Pppay >gi|4567229|gb|AAD23644.1|AC007119_10_53:334 (AC007119) putative pectinesterase [Arabidopsis thaliana] lyktkskrsianyhhiiiinifilssitsssmasssspssidfstailir -------VDQSGKG--DFSKIQEAIESIPPNLNnsqLYFIWVKPGIYREK VVIPaeKPYITLSGTQASNTFLIWS----------DGEDILESPTLTIFA SDFVCRFLTIQNKFG---------------TAGRAVALRV--AADKAAFY GCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSL-- -----SPNNGSITAQMRtSATEKSGFTFLGCKLTGSG------STFLGRP WGAYS--------------RVVFAYSFFSNVVApqGWNQWGDSTK----- ---ENTVYYGEYKCYGPGADREQRVEWSKQlsdEEATVFLSKDFIGGKDW LRPapshfknapkqtqnkein >gi|7488000|pir||T00536_36:332 pectinesterase homolog T20K24.17 - Arabidopsis thalianagi|3176717|gb|AAD12032.1| (AC002392) putative pectinesterase [Arabidopsis thaliana] mkgvtihnfcysyfkvcllvmslaygsaewdgsssQIAKTIIVNPNDAR- -YFKTVQSAIDSIPLQNQdWIRILISNGIYSEKVTIPrgKGYIYMQGGGI EKTIIAYG----------DHQLTNTSATFTSYPSNIIITGITFKNKYN-- -------IASSSSPTKPAVAAMM--LGDKYAIIDSSFDGFQDTLYDDYGR HYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPN-EVYGTITAQGR dSPTDKGGFVFKDCTVMGSG------KALLGRAWKSYS------------ --RVIFYRSMFSDNILpiGWDAWKAKGQ--------EGHITFVEFGCTGV GADTSKRVPWLTKaseKDVLQFTNLTFIDEEGWL--srlpikf >gi|6554191|gb|AAF16637.1|AC011661_15_1:214 (AC011661) T23J18.24 [Arabidopsis thaliana] -------------------------------------------------- ------------------------------------------------MA QDIWFQNTAG--------------PAKHQAVALRV--SADQTVINRCRID AYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQK ----NMLTAQGReDQNQNTAISIQKCKITASSDLAPVKgsvKTFLGRPWK LYS--------------RTVIMQSFIDNHIDpaGWFPWDGEFA------- -LSTLYYGEYANTGPGADTSKRVNWKGFkvikdsKEAEQFTVAKLIQGGL WLKPtgvtfqewl >gi|7670030|dbj|BAA94984.1|_41:337 (AB026636) pectinesterase-like protein [Arabidopsis thaliana] mghrtrmilvltlvvmsiwgsdasamqktkfdaplltekiATNRSIIVDI EGKG--DYTSVQKAIDAVPVGNSnWIIVHVRKGIYKERVHIPenKPFIFM RGNGKGKTVIESS---------QSSVDNVASATFKVEANHFVAFGISIRN DAP---------VGMAFTSENQSVAAFV--AADKVAFYHCAFYSLHNTLF DNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKP---YGSI TAHHReSAEEKTGYVFIRGKVYGID------EVYLGRAKGPYS------- -------RVIFAKTYLSKTVVpdGWTNWSYHGS--------TQNLYHGEY KCHGPGAERQKRSDWAKDltkQEVESFLSIDFIDGTSWLP-vwlqekf >gi|1084429|pir||S46296_1:220 pectin esterase - Petunia inflata -----ATVALDGSG--QYKTIKEALDAVPKKNTePFIIFIKAGVYKEYID IPksMTNVVLIGEGPTKTKITGN------KSVKDGPSTFHTTTVGVNGAN FVAKNIGFENTAG--------------PEKEQAVALRV--SADKAIIYNC QIDGYQDTLYVHTYRQFYRDCTITGTVDFIFGNGEAVLQNCKVIVRKPAQ NQS----CMVTAQGRtEPIQKGAIVLQNCEIKPDTDYFSLSppsKTYLGR PWK----------------------------------------------- ------------------------------------------------- >gi|4514622|dbj|BAA75474.1|_23:325 (AB011211) pectin methylesterase [Aspergillus oryzae] mvksllvsglfaatalaasrmtAPAGAIVVAKSG-G--DYDTLSAAVNAL STTETaTQTIFIEEGTYDEQVYIPslAGKLIIYGQTEDDTTYTGNLVNIT HnIKLADVANDDETATVRNHSPNSSIYNLNIINTCG-------------- QVCHQALAVSP--YGNGQGYYGCQFTGYQDTLLAQSGNQVYAHNLIEGAV DFIFGqHARAWFQDCDIRVL------KGPSSGYITANGRsSETDTSYYVI HKSSVAAaDGNDVPSGTYYLGRPWSQYA--------------RVLYQETS MTDVINsaGWSVWSTTQA-------NTENVTFAEYGNTGAGAEGTRASFS EKLSEPVAISTILGSDWAQWV--dtsyin >gi|130345|sp|P17872|PME_ASPTU_23:325 PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|83665|pir||JT0589 pectinesterase (EC 3.1.1.11) precursor - Aspergillus nigergi|2369|emb|CAA37084.1| (X52902) pectinesterase [Aspergillus niger]gi|2373|emb|CAA38084.1| (X54145) pectinesterase [Aspergillus niger] mvksilasvlfaatalaasrmtAPSGAIVVAKSG-G--DYDTISAAVDAL STTSTeTQTIFIEEGSYDEQVYIPalSGKLIVYGQTEDTTTYTSNLVNIT HaIALADVDNDDETATLRNYAEGSAIYNLNIANTCG-------------- QACHQALAVSA--YASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAV DFIFGqHARAWFHECDIRVL------EGPSSASITANGRsSESDDSYYVI HKSTVAAaDGNDVSSGTYYLGRPWSQYA--------------RVCFQKTS MTDVINhlGWTEWSTSTP-------NTENVTFVEYGNTGTGAEGPRANFS SELTEPITISWLLGSDWEDWV--dtsyin >gi|5802953|gb|AAD51853.1|AF178989_1_32:330 (AF178989) pectin methylesterase [Vitis riparia] mlhllalvlslaaaavaaptsltaragrtsp---PSGCLSVGSSG--TYK TVSAAVAKLSTSSTtAQCIFIYKGTYKEQVYVPalKSALTIYGETTDTSG FASNTVTITQgKSQDDVSGNDLTATLRAWTPNLKVYNINIVNTRG----- ----------EGSQALALSA--NADKQGYYGCQFKGYQDTILAQTGNQVY AKSYIEGATDFIFGqKATAWFDGVDIRVL-------AASLGYITANGRdS DSNPSYYVINKSKVSAaSGNTVKAGAFYLGRPWRNYA------------- -RVVFQNTAPSNVVNakGWTQWGSSDP-------RTDKVTFGEYGNTGDG ASGTRATFAKKLSSAVSISTVLGSSYKNWV--dttyls >gi|2499454|sp|Q12535|PME_ASPAC_23:326 PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|1223912|gb|AAB42153.1| (U49378) pectin methylesterase [Aspergillus aculeatus] mvksvlasalfavsalaasrttAPSGAIVVAKSG-G--DYTTIGDAIDAL STSTTdTQTIFIEEGTYDEQVYLPamTGKVIIYGQTENTDSYADNLVTIT HaISYEDaGESDDLTATFRNKAVGSQVYNLNIANTCG------------- -QACHQALALSA--WADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGA VDFIFGqHARAWFQNVDIRVV------EGPTSASITANGRsSETDTSYYV INKSTVAAkEGDDVAEGTYYLGRPWSEYA--------------RVVFQQT SMTNVINslGWTEWSTSTP-------NTEYVTFGEYANTGAGSEGTRASF AEKLDAKLTITDILGSDYTSWV--dtsyf >gi|100010|pir||S25172_1:216 pectinesterase (EC 3.1.1.11) - kidney bean (fragment)gi|21062|emb|CAA48169.1| (X68028) pectinesterase [Phaseolus vulgaris] -----AVVAKDGSG--QFKTIGEALKLVKKKSEkRFSVYVKEGRYVENID LDknTWNVMIYGDGKDKTFVLGS------RNFMDGTPTFETATFAVKGKG FIAKDIGFVNNAG--------------ASKHQAVALRS--GSDRSVFFRC SFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLP NQF----NTITAQGKkDPNQNTGIIIQKSTITPFGNNLTA-PTYLGRPWK -------------------------------------------------- ---------------------------------------------- >gi|5442422|gb|AAD43340.1|AF159252_1_34:332 (AF159252) pectin methylesterase [Cochliobolus carbonum] mhptlvfflslvaataaapaenvlrrasfdrts--APAGCLTVGGSG--K YKTVQSAVNALDKSTSkAQCIFIAKGTYTEQVYIQqlNSPLTIYGETKDT RSYSGNTVTITQrKSQNDTPSNDETATLRAHTPNLKVYNINLVNTRG--- ------------QGSQALAVSA--WADKQGYYGCSFKGYQDTVLAQLGNQ VYAKSYIEGATDFIFGqQARAWFDGCDIGVL-------GAQVGWITASGR aADSNPSYYVFNKSKVSPaVGATVSSGVYYLGRPWGNYA----------- ---RVVFQHTDLSNVINpqGWAAWNTGDA-------RTDHVLFGEYQNTG AGASG-KRSFGQTLKAALSITDILGSNYKDWV--dvsyls >gi|7488907|pir||T10488_47:279 pectinesterase (EC 3.1.1.11) PECS1.2 - sweet orange (fragment)gi|2098707|gb|AAB57668.1| (U82974) pectinesterase [Citrus sinensis] iknmtdtdmmimrtsnnrklieetstvdgwpawlstgdrrllqsss-VTP NVVVAADGSG--NFKTVAAAVAAAPQGGTkRYIIRIKAGVYRENVEVTkk HKNIMFIGDGRTRTIITGS------RNVVDGSTTFKSATV---------- -------------------------------------------------- ---------------------------GQTAAVLQNCDIHARKPNSGQK- ---NMVTAQGRaDPNQNTGIVIQKSRIGATSDLKPVQgsfPTYLGRPWKE YS--------------RTVIMQSSITDVIHpaGWHEWDGNFA-------- LNTLFYGEHQNAGAGAGTSGRVKWKGFrvitsaTEAQAFTPGSFIAGSSW L--gstgfpfslgl >gi|7447385|pir||T09823_1:216 pectinesterase (EC 3.1.1.11) - papaya (fragment)gi|1545901|emb|CAA69206.1| (Y07899) pectinesterase [Carica papaya] -----AVVAKDGTG--NFQTVKEAMDAA--DGKkRFVIYVKAGVYKEKIH SNKDGITLIGDGKYSTIIVGD------DSVAGGSTMPGSATITMTGDGFI ARDIGFQNTAG--------------PQGEQALALNI--ASDHSVLYRCSI AGYQDTLYAHALRQFYRECDIYGTVDFIFGNAAAVFQNCYLVLRLPRKKG Y----NVILANGRsDPGQNTGFSVHNCRIVPSSEFSPVKhkyESYLGRPW K------------------------------------------------- ----------------------------------------------- >gi|5734773|gb|AAD50038.1|AC007980_3_154:345 (AC007980) 29006 [Arabidopsis thaliana] niiqerttmhepqrthgripnifyfeclfflelcylllyflnshmfykla -------------------------------------------------- -----------------------------------------AIDGNWFMA QDLWIQNTAG--------------PAKGQAVALRV--SGDAVVIYRCRID AYQDTLYAHSYRQFYRDCFITGTVDFIFGHASAIFQNCRIEARKPMEGQS ----NVITAQQSDKPGTSGFSIQNCSITASSDLVPVKrmvKTFLGRPWGD FS--------------TVVFMESYLDDMIDpmGWTPWNSSTTGR------ LSTLYYGEYKNKGPRANTSQRVR------------------------ >gi|130347|sp|P24791|PME_BURSO_76:395 PECTINESTERASE PRECURSOR (PECTIN METHYLESTERASE) (PE)gi|538684|pir||A49747 pectinesterase - Pseudomonas solanacearumgi|151540|gb|AAA25984.1| (M62803) pectinesterase [Ralstonia solanacearum] aatstatrpqlsnadaraytiasymasfgtigslttdnwdptggvgavsg -FRANYAVAADGSA--QYKTVQAAIDAAVADGGvaRKYISVKAGTYNELV CVPesAPPITLYSLDanANNTVIVYNNANPTPASGAKTnpcmgtssnatV GTVRSATAMVRASNFNARNLTFKNSYV---------EGTFADNNQSAVAL AV--RGDKAILENVSVIGNQDTLYLGAtnntmvIRAYFKNSFIQGDTDFI FGAGTAVFHGCTIQYTAARLGAR--ATSYVFAPSTAPDNPHGFLAINSTF NATGNASNN-STHLGRAWDQGVSGTSAYINGSSPNGQVVIRDSSLGAHIR LADPWGPSTAGRPYCSSKCAYSanRFFEYNNTGAGSG------------- -----------------n >gi|7489089|pir||T16974_5:184 pectinesterase (EC 3.1.1.11) - curled-leaved tobacco (fragment)gi|1279596|emb|CAA96433.1| (Z71751) pectin methylesterase [Nicotiana plumbaginifolia] aitv---------------------------------------------- NVEVTkkKMNLMIVGDGMNSTVITGS------LNVVDGSTTFRSATLAAV GQGFILQDICIQNTAG--------------PEKHQAVALRV--GADMSVI NRCRIDAYQDTLYAHSLRQFYRDCYVTGTVDFIFGNAAVVLQKCQLVPRK PGKNQK----NMVTAQGRtDPNQATGTSIQFCNIIASPDLEPVKneyKTY LGRPWK-------------------------------------------- -------------------------------------------------- -- >gi|2507166|sp|P46130|YBHC_ECOLI_79:421 HYPOTHETICAL 46.1 KDA PROTEIN IN MODC-BIOA INTERGENIC REGION PRECURSORgi|7449810|pir||D64813 ybhC protein precursor - Escherichia coligi|1786989|gb|AAC73859.1| (AE000180) putative pectinesterase [Escherichia coli] qrpsdqtapgtssrpilsakeaqnfdaqhyfasltpgaaawnpspitlpa --QPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTnkRQYIAVMPGEYQGTV YVPaaPGGITLYGTGEKPIDVKIGLSLDGGMSPADWrhdvnprgkympgk pawymydscqskrsdsIGVLCSAVFWSQNNGLQLQNLTIENTLG------ ----DSVDAGNHPAVALRT--DGDQVQINNVNILGRQNTFFVTNsgvqnr letnrqPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQE---- AYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQ----LGRSLDVDA----- -----NTNGQVVIRDSAINEGFNTAKPWAdavisnrpfagntGSVDDNDE IQRNLNDTNYnrmWEYNNRGVGSKV------------------------- ----vaeakk >gi|4062339|dbj|BAA35436.1|_47:389 (D90715) Hypothetical protein in bioA 5'region . [Escherichia coli] dqtapgtssrpilsakeaqnfdaqhyfasltpgaaawnpspitlpa--QP DFVVGPAGTQGVTHTTIQAAVDAAIIKRTnkRQYIAVMPGEYQGTVYVPa aPGGITLYGTGEKPIDVKIGLSLDGGMSPADWrhdvnprgkympgkpawy mydscqskrsdsIGVLCSAVFWSQNNGLQLQNLTIENTLG---------- DSVDAGNHPAVALRT--DGDQVQINNVNILGRQNTFFVTNsgvqnrletn rqPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQE----AYVF APATLSNIYYGFLAVNSRFNAFGDGVAQ----LGRSLDVDA--------- -NTNGQVVIRDSAINEGFNTAKPWAdavisnrpfagntGSVDDNDEIQRN LNDTNYnrmWEYNNRGVGSKV----------------------------- vaeakk >gi|2499456|sp|Q47474|PMEB_ERWCH_84:427 PECTINESTERASE B PRECURSOR (PECTIN METHYLESTERASE B) (PE B)gi|2121036|pir||S70914 pectinesterase (EC 3.1.1.11) precursor - Erwinia chrysanthemigi|1212891|emb|CAA59151.1| (X84665) pectin methylesterase [Erwinia chrysanthemi] pvfpgtvsrpvlsaqeagrftpqhyfahggeyakpvadgwtptpidtsrv -TAAYVVGPRAGVAGATHTSIQQAVNAALRQHPgqtRVYIKLLPGTYTGT VYVPegAPPLTLFGAGDRPEQVVVSLALDSMMSPADYrarvnphgqyqpa dpawymynacatkagatINTTCSAVMWSQSNDFQLKNLTVVNALL----- -----DTVDSGTHQAVALRT--DGESGATGKCPPAQPSDTFFVNTsdrqn syvtdhySRAYIKDSYIEGDVDYVFGRATAVFDRVRFHTVSSRGSKE--- -AYVFAPDSIPSVKYGFLVINSQLTGDNGYRGAQKAKLGRAWDQGA-KQT GYLPGKTANGQLVIRDSTIDSSYDLANPWGaaattdRPFKGNISPQRDLD DIHFnrlWEYNT------------------------------------qv llhe >gi|82096|pir||A25010_1:293 pectinesterase (EC 3.1.1.11) - tomato -IIANAVVAQDGTG--DYQTLAEAVAAAPDKSKtRYVIYVKRGTYKENVE VAsnKEFPTYLGRPwkeYSRTVVMES----------YLGGLINPAGWAEW DGDFALKTLyygEFMNGKV---------------------------GADM SVINRCRIDAYQDTLYAHSQRQFYRDDYVTGTVDFIFGGAAVVKNKCQLV ARKPGKYQQ----NMVTAQGRtDPNQATGTSIQFCNIIASGD-------- LERPVMIVG---DGMYATtitgslNVVEGSTTFRSATLAAVGQGTLLQDI CIQ-----------------NTAGPARDqaVALRVKWPGYhvitdpAKAM PFTVAKLIQGGSWLR-stgvayvdglyd >gi|2275206|gb|AAB63828.1|_14:238 (AC002337) putative pectinesterase [Arabidopsis thaliana] mtlfvygysaaaeQIAYTITVDLNGGG--NFTTVQSAIDSISPPNHnWIR VFTQNGIY------------------------------------------ -----------------------------------------------RM- -LGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFK ECTLNMTLGIYAPD-NPYGTITAHQRpSPSDEGGFVFSDCTVTGVG---- --KTLLGRAWGSNA--------------RVIFDRSRLSDVVLpiGWDAWR AKGN--------ERDLTFVEAGCTGAGADTSQRVPWLKKlslSEVDGFAS VSFIDQDGWI--srfpieggp >gi|7485253|pir||T01761_29:238 hypothetical protein A_IG002P16.5 - Arabidopsis thalianagi|2191160|gb|AAB61046.1| (AF007270) Similar to pectinesterase [Arabidopsis thaliana] mpclfifialllsscigtlkaldqtcgnKVVNTIVVDQAGSG--KFRTVQ AAIDSVGELNSlWIKIKVKRGVY--------------------------- -----------------------------------NTYNRLTSLTKANGM SWDIK--PAVAISV--YGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIE GAIDFIFGSGQSVYE----------------------------------- -VWST-----------SVYLGRAYGPFS--------------RVIFIQTD LSSVVHpeGWYSWHYGGY--------EMSFTYAEVECKGAGSDMSRRVPW IDKlhsfYTKQQFSISNFIDQDQWI--sniprf >gi|7767677|gb|AAF69174.1|AC007915_26_57:221 (AC007915) F27F5.7 [Arabidopsis thaliana] medsklhedmendmldntelnlvvpngpswlshvdkkdlylndetlkkit ----DILVAKDVTG--NYNIVNVAIAAAPQHSQkRFVIYIKTSIYVEIVV IGnmKSNLTLIADGQDSTIITFN------LSSSNSKRTFNTATF-----G KNLVDMCFRNTTW--------------PVKGPVVTLRV--NGDMSIIYRC RVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQIVHMDG-- -------------------------------------------------- -------------------------------------------------- --------------------------------------------- >gi|5566248|gb|AAD45347.1|_1:96 (AF159122) pectine methylesterase [Vitis vinifera] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------D GFQDTLYPHTNRQFYRECRISGTVDFIFGDATVVFQNCQILVKKGLPNQK ----NTITAQGRkDPAQPTGFSIQFSNISADSDLLASVnstLSHLGRPW- -------------------------------------------------- ---------------------------------------------- >gi|2499455|sp|P55743|PMEB_ERWCA_2:174 PECTINESTERASE B (PECTIN METHYLESTERASE B) (PE B) r------------------------------------------------- -------------------------------------------------- -------------------------------------------------- IGRQDTFFVNTsnlrneyvtdrySRAYIKDSYIEGDVDYVFGRATAVFDR VHFHTVSSRGAKD----IHVFAPDSMPWAQYGFLAVSCRFTGDEGFSGGR KAKLGRAWDQGA-RQTGYQPNKTANGQLVIRDSTIDASYDREQPWGvaat taRPFAGNVDSARNLDDVQFnrlWEYNN---------------------- --------------idev >gi|2121037|pir||S70913_50:180 pectinesterase (EC 3.1.1.11) precursor - Erwinia chrysanthemi (fragment) mslthysglaaavsmsliltacggqtpnsarfqpvfpgtvsrpvlsaqe- -------------------------------------------------- -------------------------------------------------- -------AG--------------RFTHQAVALRT--DGESGATGKCPPAQ PSDTFFVNTsdrqnsyvtdhySRAYIKDSYIEGDVDYVFGRATAVFDRVR FHTVSSRGSKE----AYVFAPDSIPSVKYGFLVINSQLTGDNGYRGAQKA KLGRAWDQ------------------------------------------ -------------------------------------------------- ---g >gi|1932927|gb|AAB51702.1|_1:98 (U75597) putative pectin methylesterase [Arabidopsis thaliana] -----ATVAADGSG--TFKTVAAAVAAAPENSNkRYVIHIKAGVYRENVE VAkkKKNXMFMGDGRTRTIITGS------RNVVDGSTTFHSATVAAVREK FLTRDITFXNT--------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------------------gv >gi|5566252|gb|AAD45348.1|_1:77 (AF159123) pectinesterase [Vitis vinifera] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---DTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQACKIQPRQPMSNQF ----NTITAQGKkDPNQNTGISIQKCSISALNTL---------------- -------------------------------------------------- -------------------------------------------taprt >gi|6554190|gb|AAF16636.1|AC011661_14_266:359 (AC011661) T23J18.23 [Arabidopsis thaliana] srarvalaifvsvlparddlkmiisnrfpswltaldrkllesspkviknh -VTANVVVAKDGTG--KFKTVNEAVAAAPENSNtRYVIYVKKGVYKETID IGkkKKNLMLVGDGKDATIITGS------LNVIDGSTTFRSATVGNITFF FHL----------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------------------cllsy yilvseelkill >gi|2895512|gb|AAC02973.1|_2:79 (AF033205) putative pectin methylesterase [Arabidopsis thaliana] x------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------GTXDFIFGNSAVVFQNCDIVARNPGAGQ K----NMLTAQGReDQNQNTAISIQKCKITASSDLAPVKgsvKTYXGRPW KEYS---------------------------------------------- ----------------------------------------------- >gi|2895514|gb|AAC02974.1|_2:79 (AF033206) putative pectin methylesterase [Arabidopsis thaliana] x------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------GTXDFIFGNAAVVFQDCNLYPRQPMQNQ F----NAITAQGRtDPNQNTGISIYNCTIKPADDLVSSNytvKTYXGRPW KEYS---------------------------------------------- ----------------------------------------------- >gi|1932925|gb|AAB51701.1|_1:86 (U75596) putative pectin methylesterase [Arabidopsis thaliana] -----ATVAADGSG--TFKTVAAAVAAAPENSNkRYVIHIKAGVYRENVE VAkkKKNIMFMGDGRTRTIITGS------RNVVDGSTTFHSATVAAVXR- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------------------kip >gi|2895516|gb|AAC02975.1|_2:74 (AF033207) putative pectin methylesterase [Arabidopsis thaliana] x------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------GTXDFIFGAGTVVFQGCSIRPRQPLPNQ F----NTITAEGTqEANQNTGISIHQCTISPNGNVTA--TTYXGRPWKEY S------------------------------------------------- -------------------------------------------- >gi|100009|pir||S25170_1:70 pectinesterase (EC 3.1.1.11) - kidney bean (fragment)gi|21058|emb|CAA48171.1| (X68030) pectinesterase [Phaseolus vulgaris] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------TIDFIFGNAVVVLQECNIISRKPLHGQA ----TVITAQSRdDPLEPTGIVIQGCNIKASFDNSSV-KSYLGRPWK--- -------------------------------------------------- ------------------------------------------- >gi|1076143|pir||S50210_27:142 surface layer protein B - Methanosarcina mazeigi|602882|emb|CAA54899.1| (X77929) surface layer protein B [Methanosarcina mazei]gi|1092505|prf||2024219A surface layer protein [Methanosarcina mazeii] mdggigiknkvlillgiflilslisgIGSAAEIIVQPGDS------IQAA IDSSKSGDT---ITIKPGTYTENVNITKSSLLIRSESgnPDETIIKAK-- -----------------------------------------------SSS SNALSMQAWNVTI------------------------------------- -----------------------------KGIKTIGASGSs----YSGIY MYKCN-------------------------------------QCVIENNK MMNNGYG------------------------------------------- ---------------------irivssnrctvskntvlnngvygiylgsc snntisgntatndnrgihvgs >gi|806971|gb|AAB32927.1|_2:42 pectin esterase isoform PE3=pectin pectyl-hydrolase {internal fragment} {EC 3.1.1.11} [Prunus persica=peaches, cv. Coronet, ripe fruit, Peptide Partial, 44 aa, segment 1 of 2] x------------------------VAAXPEKXQtXYVIRIKAGVYXENV DVPkkKTNIMFLGDGR---------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------------------------------ts >gi|7483620|pir||C69426_20:99 hypothetical protein AF1412 - Archaeoglobus fulgidusgi|2649162|gb|AAB89837.1| (AE001006) A. fulgidus predicted coding region AF1412 [Archaeoglobus fulgidus] mrllfvmlillaatpqvsa-----ATLRVCGQC--DFTTISDAIAASTNG DT---ILIESGIYRENLVIQK-SLRILGDG---AVIEPEFRHLPVISVFG V-------------DSFSLEGVEIKN------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------gsvgmeirfvnnlsikkssffnnfegikafsigsgrleg lsfsgfftgvs >gi|7160130|emb|CAB76316.1|_39:79 (AL158060) hypothetical protein SC5C11.10c. [Streptomyces coelicolor A3(2)] mkkchvvylvctaamigtglgaapassvprthlvhpge------------ -------SIQKAVDAAEPGDT---VLVTTGTYRESVKVSTPRLTLRGMGR S------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------tvirpstqkaaantcaeggn gicaigtkdenvkgitvsdltvtgftrtgv --simple mime boundary-- From farmer@cse.ucsc.edu Wed Jun 14 06:24:59 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id GAA12801 for Message-Id: <200006140429.VAA22032@alpha.cse.ucsc.edu> Subject: T0100(database hits) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0100.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following are search results using the SAM-T99 method for a sequence query against a database. If there are no hits associated with this output, then your score cutoff was too conservative. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii Content-Disposition: attachment; filename="t99-results-960943117.t99dbhits.txt" The E-value is an estimate of approximately how many sequences would score this well by chance in the database searched. For SAM-T99, E-values less than about 0.01 are roughly equivalent, as sequences that score that well have most likely already been included in the SAM-T99 multiple alignment. Database: PDB Score method: average Summary of Database Hits: Average Target Template SeqID Reverse EValue Reverse EValue Reverse EValue SeqLabel 1aqh -8.46 4.761 -8.46 4.7 --------- --------- : mol:protein length:453 Alpha-Amylase 1aqm -8.46 4.761 -8.46 4.7 --------- --------- : mol:protein length:453 Alpha-Amylase 1b0iA -8.46 4.761 -8.46 4.7 --------- --------- : mol:protein length:453 Alpha-Amylase 4nn9 -8.41 5.005 -8.41 5 --------- --------- : mol:protein length:388 Neuraminidase N9 (E.C. 3.2.1.18) (Sialidase) 1nccN -8.4 5.055 -8.4 5 --------- --------- : mol:protein length:389 N9 Neuraminidase-Nc41 (E.C. 3.2.1.18) Mutant 1ncdN -8.27 5.757 -8.27 5.7 --------- --------- : mol:protein length:389 N9 Neuraminidase-Nc41 (E.C. 3.2.1.18) Comple 1nmaN -8.11 6.756 -8.11 6.7 --------- --------- : mol:protein length:388 N9 Neuraminidase 1bn8A -7.99 7.617 -7.99 7.6 --------- --------- : mol:protein length:420 Pectate Lyase 2qwa -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwb -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwc -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwd -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwe -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwf -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwg -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 2qwh -7.96 7.849 -7.96 7.8 --------- --------- : mol:protein length:388 Neuraminidase 1a14N -7.95 7.928 -7.95 7.9 --------- --------- : mol:protein length:388 Neuraminidase 1bji -7.95 7.928 -7.95 7.9 --------- --------- : mol:protein length:388 Neuraminidase 1mwe -7.95 7.928 -7.95 7.9 --------- --------- : mol:protein length:388 Neuraminidase 1nmcA -7.95 7.928 -7.95 7.9 --------- --------- : mol:protein length:388 Neuraminidase --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results-960943117.t99pairwise.a2m' Content-Disposition: attachment; filename="t99-results-960943117.t99pairwise.a2m" >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1aqh mol:protein length:453 Alpha-Amylase tpttfvhlfewnwqdvaqeceqylgpkgyaavqvsppnehitgsqwwtry qpvsyelqsrggnraqfidmvnrcsaagvdiyvdtlinhmaagsgtgtag nsfgnksfpiyspqdfhesctinnsd------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---YGNDRYRVQNCELVGLADLDTASNYVQNTIAA--------------- -------------------------------------------------- -------------------------------------------------- ------------------yindlqaigvkgfrfdaskhvaasdiqslmak vngspvvfqevidqggeavgaseylstglvtefkystelgntfrngslaw lsnfgegwgfmpsssavvfvdnhdnqrghggagnvitfedgrlydlanvf mlaypygypkvmssydfhgdtdaggpnvpvhnngnlecfasnwkcehrws yiaggvdfrnntadnwavtnwwdntnnqisfgrgssghmainkedstlta tvqtdmasgqycnvlkgelsadakscsgevitvnsdgtinlnigawdama ihknaklntssas >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1aqm mol:protein length:453 Alpha-Amylase tpttfvhlfewnwqdvaqeceqylgpkgyaavqvsppnehitgsqwwtry qpvsyelqsrggnraqfidmvnrcsaagvdiyvdtlinhmaagsgtgtag nsfgnksfpiyspqdfhesctinnsd------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---YGNDRYRVQNCELVGLADLDTASNYVQNTIAA--------------- -------------------------------------------------- -------------------------------------------------- ------------------yindlqaigvkgfrfdaskhvaasdiqslmak vngspvvfqevidqggeavgaseylstglvtefkystelgntfrngslaw lsnfgegwgfmpsssavvfvdnhdnqrghggagnvitfedgrlydlanvf mlaypygypkvmssydfhgdtdaggpnvpvhnngnlecfasnwkcehrws yiaggvdfrnntadnwavtnwwdntnnqisfgrgssghmainkedstlta tvqtdmasgqycnvlkgelsadakscsgevitvnsdgtinlnigawdama ihknaklntssas >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1b0iA mol:protein length:453 Alpha-Amylase tpttfvhlfewnwqdvaqeceqylgpkgyaavqvsppnehitgsqwwtry qpvsyelqsrggnraqfidmvnrcsaagvdiyvdtlinhmaagsgtgtag nsfgnksfpiyspqdfhesctinnsd------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---YGNDRYRVQNCELVGLADLDTASNYVQNTIAA--------------- -------------------------------------------------- -------------------------------------------------- ------------------yindlqaigvkgfrfdaskhvaasdiqslmak vngspvvfqevidqggeavgaseylstglvtefkystelgntfrngslaw lsnfgegwgfmpsssavvfvdnhdnqrghggagnvitfedgrlydlanvf mlaypygypkvmssydfhgdtdaggpnvpvhnngnlecfasnwkcehrws yiaggvdfrnntadnwavtnwwdntnnqisfgrgssghmainkedstlta tvqtdmasgqycnvlkgelsadakscsgevitvnsdgtinlnigawdama ihknaklntssas >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >4nn9 mol:protein length:388 Neuraminidase N9 (E.C. 3.2.1.18) (Sialidase) rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISRASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1nccN mol:protein length:389 N9 Neuraminidase-Nc41 (E.C. 3.2.1.18) Mutant irdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecr fyalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigws stschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqese cvchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecs cygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpn dptvgkcndpypgnnnngvkgf---------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---SYLDGVNTWLGRTISRASRSGYEMLKVpnaltddksKPTQGQTIVLN TDWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVW WTSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1ncdN mol:protein length:389 N9 Neuraminidase-Nc41 (E.C. 3.2.1.18) Comple irefnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecr fyalsqgttirgkhsngtihdrsqyrdliswplsspptvynsrvecigws stschdgrarmsicisgpnnnasaviwynrrpvteintwarnilrtqese cvcqngvcpvvftdgsatgpaetriyyfkegkilkwepltgtakhieecs cygeqagvtctcrdnwqgsnrpviqidpvamthtsqyicspvltdnprpn dptvgkcndpypgnnnngvkgf---------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---SYLDGGNTWLGRTISIASRSGYEMLKVpnaltddrsKPTQGQTIVLN TDWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVW WTSNSIVSMCSSTEFLGQWNW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1nmaN mol:protein length:388 N9 Neuraminidase refnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyrdliswplsspptvynsrvecigwss tschdgrarmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vcqngvcpvvftdgsatgpaetriyyfkegkilkwepltgtakhieecsc ygeqagvtctcrdnwqgsnrpviqidpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGGNTWLGRTISIASRSGYEMLKVpnaltddksRPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWNW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1bn8A mol:protein length:420 Pectate Lyase mkkvmlatalflgltpaganaadlghqtlgsndgwgaystgttggskass snvytvsnrnqlvsalgketnttpkiiyikgtidmnvddnlkplglndyk dpeydldkylkaydpstwgkkepsgtqeeararsqknq------------ --------------------------------KARVMVDiPANTTIVGSG TNAKVVGGN--------------------FQIKSDNVIIRNIEFQDAYDY FPQWDPTDGSSGNWNSQ--------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------ydnitinggthiwidhctf ndgsrpdstspkyygrkyqhhdgqtdasnganyitmsynyyhdhdkssif gssdsktsddgklkitlhhnryknivqraprvrfgqvhvynnyyegstss ssypfsyawgigksskiyaqnnvidvpglsaaktisvfsggtalydsgtl lngtqinasaanglsssvgwtpslhgsidasanvksnvinqagagkln >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwa mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwb mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwc mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwd mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwe mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwf mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwg mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >2qwh mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctckdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1a14N mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1bji mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1mwe mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl >T0100 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTI TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSA QSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLV GYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKS GNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTT FSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSR FFEYKSYGAGAAVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP >1nmcA mol:protein length:388 Neuraminidase rdfnnltkglctinswhiygkdnavrigedsdvlvtrepyvscdpdecrf yalsqgttirgkhsngtihdrsqyraliswplsspptvynsrvecigwss tschdgktrmsicisgpnnnasaviwynrrpvteintwarnilrtqesec vchngvcpvvftdgsatgpaetriyyfkegkilkweplagtakhieecsc ygeraeitctcrdnwqgsnrpviridpvamthtsqyicspvltdnprpnd ptvgkcndpypgnnnngvkgf----------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --SYLDGVNTWLGRTISIASRSGYEMLKVpnaltddksKPTQGQTIVLNT DWSGYSGsFMDYWAEGEC--------YRACFYVELIR---GRPKEDKVWW TSNSIVSMCSSTEFLGQWDW---pdgakieyfl --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results-960943117.t99pairwise.casp.al' Content-Disposition: attachment; filename="t99-results-960943117.t99pairwise.casp.al" PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1aqh F 178 Y 127 G 179 G 128 D 180 N 129 G 181 D 130 T 182 R 131 A 183 Y 132 L 184 R 133 F 185 V 134 N 186 Q 135 N 187 N 136 C 188 C 137 D 189 E 138 L 190 L 139 V 191 V 140 S 192 G 141 R 193 L 142 Y 194 A 143 R 195 D 144 A 196 L 145 D 197 D 146 V 198 T 147 K 199 A 148 S 200 S 149 G 201 N 150 N 202 Y 151 V 203 V 152 S 204 Q 153 G 205 N 154 Y 206 T 155 L 207 I 156 T 208 A 157 A 209 A 158 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1aqm F 178 Y 127 G 179 G 128 D 180 N 129 G 181 D 130 T 182 R 131 A 183 Y 132 L 184 R 133 F 185 V 134 N 186 Q 135 N 187 N 136 C 188 C 137 D 189 E 138 L 190 L 139 V 191 V 140 S 192 G 141 R 193 L 142 Y 194 A 143 R 195 D 144 A 196 L 145 D 197 D 146 V 198 T 147 K 199 A 148 S 200 S 149 G 201 N 150 N 202 Y 151 V 203 V 152 S 204 Q 153 G 205 N 154 Y 206 T 155 L 207 I 156 T 208 A 157 A 209 A 158 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1b0i_A F 178 Y 127 G 179 G 128 D 180 N 129 G 181 D 130 T 182 R 131 A 183 Y 132 L 184 R 133 F 185 V 134 N 186 Q 135 N 187 N 136 C 188 C 137 D 189 E 138 L 190 L 139 V 191 V 140 S 192 G 141 R 193 L 142 Y 194 A 143 R 195 D 144 A 196 L 145 D 197 D 146 V 198 T 147 K 199 A 148 S 200 S 149 G 201 N 150 N 202 Y 151 V 203 V 152 S 204 Q 153 G 205 N 154 Y 206 T 155 L 207 I 156 T 208 A 157 A 209 A 158 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 4nn9 D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 R 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ncc_N D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 R 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ncd_N D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 G 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 N 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nma_N D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 G 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 R 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 N 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1bn8_A N 45 K 118 E 46 A 119 R 47 R 120 L 48 V 121 T 49 M 122 I 50 V 123 T 51 D 124 R 52 P 126 N 53 A 127 N 54 N 128 L 55 T 129 H 56 T 130 L 57 I 131 K 58 V 132 G 59 G 133 E 60 S 134 S 61 G 135 R 62 T 136 N 63 N 137 G 64 A 138 A 65 K 139 V 66 V 140 I 67 V 141 A 68 G 142 A 69 G 143 A 70 N 144 I 91 F 145 T 92 Q 146 I 93 I 147 S 94 K 148 A 95 S 149 K 96 D 150 D 97 N 151 F 98 V 152 S 99 I 153 A 100 I 154 Q 101 R 155 S 102 N 156 L 103 I 157 T 104 E 158 I 105 F 159 R 106 Q 160 N 107 D 161 D 108 A 162 F 109 Y 163 D 110 D 164 F 111 Y 165 P 112 F 166 A 113 P 167 N 114 Q 168 Q 115 W 169 A 116 D 170 K 117 P 171 S 118 T 172 D 119 D 173 S 120 G 174 D 121 S 175 S 122 S 176 S 123 G 177 K 124 N 178 I 125 W 179 K 126 N 180 D 127 S 181 T 128 Q 182 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwa D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwb D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwc D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwd D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwe D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwf D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwg D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 2qwh D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 12A M 282 W 12B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1a14_N D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1bji D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1mwe D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END PFRMAT AL TARGET T0100 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nmc_A D 232 S 353 S 233 Y 354 V 234 L 355 P 235 D 356 A 236 G 357 K 237 V 358 S 238 N 359 Y 239 T 360 G 240 W 361 L 241 L 362 G 242 G 363 R 243 R 364 P 244 T 365 W 245 I 366 H 246 S 367 P 247 I 368 T 248 A 369 T 249 S 370 T 250 R 371 F 251 S 372 S 252 G 373 D 253 Y 374 G 254 E 375 R 255 M 376 Y 256 L 377 A 257 K 378 D 258 V 379 P 259 K 389 N 260 P 390 A 261 T 391 I 262 Q 392 G 263 G 394 Q 264 Q 395 T 265 T 396 V 266 I 397 F 267 V 398 L 268 L 399 N 269 N 400 T 270 T 401 S 271 D 402 M 272 W 403 D 273 S 404 N 274 G 405 H 275 Y 406 I 276 S 407 Y 277 G 408 G 278 F 410 W 279 M 411 D 280 D 412 K 281 Y 412A M 282 W 412B S 283 A 413 G 284 E 414 K 285 G 415 D 286 E 416 K 287 C 417 P 296 Y 418 E 297 R 419 D 298 A 420 S 299 C 421 R 300 F 422 F 301 Y 423 F 302 V 424 E 303 E 425 Y 304 L 426 K 305 I 427 S 306 R 428 G 310 G 429 A 311 R 430 A 312 P 431 V 313 K 432 S 314 E 433 K 315 D 434 D 316 K 435 R 317 V 436 R 318 W 437 Q 319 W 438 L 320 T 439 T 321 S 440 D 322 N 441 A 323 S 442 Q 324 I 443 A 325 V 444 A 326 S 445 E 327 M 446 Y 328 C 447 T 329 S 448 Q 330 S 449 S 331 T 450 K 332 E 451 V 333 F 452 L 334 L 453 G 335 G 454 D 336 Q 455 W 337 W 456 T 338 D 457 P 339 W 458 TER END --simple mime boundary-- From farmer@cse.ucsc.edu Wed Jun 14 07:04:44 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id HAA13235 for Message-Id: <200006140508.WAA10286@alpha.cse.ucsc.edu> Subject: T0100(target 99 secondary structure prediction) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0100.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 secondary structure prediction in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results-960943117.t99secstr.fasta' Content-Disposition: attachment; filename="t99-results-960943117.t99secstr.fasta" >T0100 LLLLLEEEELLLLLLLLLLLHHHHHHHLLLLLLLEEEEEELLEEEEEEEELLLLEEEELLLLLLEEEEELLLLLLLLLLLLLLLLEEEEEEEEELLLEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLLEEEEEEEEEELLLEEEELLLLEEEELEEEEEEEEEEELLLEEEEELEEEEEELLLLLLLLLLEEEEEELLLLLLLLLEEEEEEEEEELLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLHHLLLLLLLLLLLLLLLLEELLLLLEEEEEELLLLLLLLLLLLLLLLLHHHHHHEEEEEELLLLLLLLL --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results-960943117.t99secstr.casp.ss' Content-Disposition: attachment; filename="t99-results-960943117.t99secstr.casp.ss" PFRMAT SS TARGET T0100 AUTHOR UCSC Target99 server METHOD This prediction was derived from the following methods METHOD by averaging the corresponding probabilities: METHOD Method 0: METHOD TARGET T0100 METHOD Using neural net overrep-2500-IDaa13-5-9-7-10-5-9-11-ehl2-seeded2-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 9 METHOD 7 10 METHOD 5 9 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment /projects/compbio/tmp/hmm-target99-alpha-4215/target-align-4215.a2m METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 29.4636 METHOD METHOD CHAIN 1 METHOD Method 1: METHOD Prediction using SAM HMM nearest-neighbor METHOD sequence: T0100 METHOD model_file: /projects/compbio/tmp/sam-nn-tmp.alpha.3936/model.mod METHOD database_files: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.seq /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.2d METHOD scoring_mode: local METHOD null_model: reverse METHOD scoring_algorithm: EM METHOD adjust_score: 2 METHOD date: Tue Jun 13 21:50:44 2000 METHOD Method 2: METHOD ###begin 0 METHOD METHOD Protein secondary structure prediction by universal HMM METHOD HMM file: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/scripts/gdac.test.initreest.38state.abb.isites.gd.updated.ghmm-128reest-1-128-105-0.07gd METHOD Alignment file: /projects/compbio/tmp/hmm-target99-alpha-4215/target-align-4215.a2m METHOD METHOD guide seq name: T0100 METHOD ###end 0 MODEL 1 A C 0.553 T C 0.524 T C 0.569 Y C 0.544 N C 0.427 A E 0.615 V E 0.69 V E 0.673 S E 0.514 K C 0.457 S C 0.585 S C 0.648 S C 0.669 D C 0.666 G C 0.688 K C 0.645 T C 0.589 F C 0.428 K C 0.399 T C 0.397 I H 0.684 A H 0.702 D H 0.72 A H 0.697 I H 0.677 A H 0.621 S H 0.557 A C 0.48 P C 0.577 A C 0.613 G C 0.654 S C 0.689 T C 0.637 P C 0.437 F E 0.659 V E 0.743 I E 0.762 L E 0.741 I E 0.685 K E 0.5 N C 0.551 G C 0.548 V E 0.497 Y E 0.547 N E 0.533 E E 0.528 R E 0.579 L E 0.65 T E 0.637 I E 0.546 T C 0.49 R C 0.604 N C 0.596 N C 0.471 L E 0.593 H E 0.667 L E 0.671 K E 0.596 G C 0.46 E C 0.599 S C 0.675 R C 0.681 N C 0.646 G C 0.53 A E 0.544 V E 0.66 I E 0.664 A E 0.573 A E 0.437 A C 0.521 T C 0.463 A C 0.45 A C 0.451 G C 0.491 T C 0.508 L C 0.453 K C 0.491 S C 0.524 D C 0.493 G C 0.528 S C 0.581 K C 0.582 W C 0.543 G C 0.534 T C 0.443 A E 0.415 G E 0.387 S E 0.413 S E 0.475 T E 0.536 I E 0.573 T E 0.567 I E 0.53 S E 0.44 A C 0.497 K C 0.587 D C 0.507 F E 0.414 S E 0.506 A E 0.515 Q E 0.495 S E 0.5 L E 0.542 T E 0.557 I E 0.562 R E 0.51 N C 0.403 D C 0.514 F C 0.622 D C 0.663 F C 0.672 P C 0.671 A C 0.674 N C 0.642 Q C 0.597 A C 0.517 K C 0.512 S C 0.563 D C 0.651 S C 0.61 D C 0.604 S C 0.578 S C 0.562 K C 0.576 I C 0.593 K C 0.574 D C 0.556 T C 0.51 Q C 0.358 A E 0.463 V E 0.539 A E 0.561 L E 0.581 Y E 0.563 V E 0.523 T E 0.459 K C 0.54 S C 0.588 G C 0.59 D C 0.584 R C 0.398 A E 0.461 Y E 0.577 F E 0.591 K E 0.549 D E 0.489 V E 0.459 S E 0.508 L E 0.541 V E 0.492 G E 0.418 Y C 0.4 Q C 0.442 D C 0.496 T E 0.481 L E 0.575 Y E 0.574 V E 0.501 S C 0.454 G C 0.549 G C 0.546 R C 0.41 S E 0.513 F E 0.595 F E 0.559 S E 0.419 D C 0.388 C E 0.463 R E 0.575 I E 0.594 S E 0.548 G E 0.472 T E 0.476 V E 0.481 D E 0.472 F E 0.643 I E 0.654 F E 0.609 G C 0.414 D C 0.549 G C 0.414 T E 0.478 A E 0.579 L E 0.598 F E 0.563 N E 0.465 N C 0.405 C E 0.42 D E 0.557 L E 0.603 V E 0.598 S E 0.544 R E 0.421 Y C 0.554 R C 0.647 A C 0.616 D C 0.602 V C 0.608 K C 0.594 S C 0.607 G C 0.659 N C 0.656 V C 0.534 S E 0.408 G E 0.438 Y E 0.599 L E 0.628 T E 0.56 A E 0.445 P C 0.583 S C 0.678 T C 0.677 N C 0.703 I C 0.675 N C 0.664 Q C 0.637 K C 0.614 Y C 0.478 G E 0.432 L E 0.599 V E 0.672 I E 0.671 T E 0.628 N E 0.519 S E 0.431 R E 0.538 V E 0.576 I E 0.507 R C 0.448 E C 0.6 S C 0.647 D C 0.623 S C 0.506 V C 0.468 P C 0.467 A C 0.455 K C 0.448 S C 0.372 Y E 0.431 G E 0.448 L E 0.378 G C 0.559 R C 0.607 P C 0.612 W C 0.467 H C 0.46 P C 0.476 T C 0.492 T C 0.555 T C 0.594 F C 0.577 S C 0.604 D C 0.643 G C 0.625 R C 0.522 Y C 0.508 A C 0.58 D C 0.629 P C 0.606 N C 0.601 A C 0.615 I C 0.64 G C 0.598 Q E 0.446 T E 0.664 V E 0.704 F E 0.674 L E 0.574 N C 0.408 T C 0.474 S C 0.428 M C 0.387 D C 0.408 N H 0.405 H H 0.384 I C 0.401 Y C 0.515 G C 0.583 W C 0.523 D C 0.497 K C 0.471 M C 0.473 S C 0.523 G C 0.565 K C 0.579 D C 0.582 K C 0.613 N C 0.704 G C 0.675 N C 0.549 T C 0.43 I E 0.402 W E 0.39 F C 0.422 N C 0.582 P C 0.552 E C 0.556 D C 0.412 S E 0.515 R E 0.568 F E 0.581 F E 0.555 E E 0.527 Y E 0.504 K C 0.521 S C 0.607 Y C 0.658 G C 0.778 A C 0.743 G C 0.727 A C 0.689 A C 0.644 V C 0.55 S C 0.545 K C 0.483 D C 0.445 R C 0.421 R C 0.468 Q C 0.5 L C 0.52 T C 0.526 D H 0.44 A H 0.491 Q H 0.487 A H 0.469 A H 0.439 E H 0.383 Y E 0.367 T E 0.425 Q E 0.395 S E 0.358 K E 0.39 V E 0.416 L C 0.421 G C 0.582 D C 0.603 W C 0.576 T C 0.493 P C 0.435 T C 0.458 L C 0.618 P C 0.744 END --simple mime boundary--