From farmer@cse.ucsc.edu Sat May 20 00:28:05 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id AAA07014 for Message-Id: <200005192231.PAA17320@alpha.cse.ucsc.edu> Subject: T0089(target 99 alignment) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 alignment in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99align.a2m' Content-Disposition: attachment; filename="t99-results.t99align.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESV NTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALE KLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDT VKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKH VIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC YANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETPVKSENPLKKIFRLFKELME >gi|2707899|gb|AAB92376.1|_1:408 (AF038380) FtsA [Pseudomonas putida] MANAHSGKMIVGLDIGTSKVVALVGEVgEDGTLEIVGIGTHPSRGLKKGV VVNIESTVQSIQRAVEEAQLMAGCRIH-SAFVGVAGNHIRSLNSHGIVAI RDR--EVSLADLERVLDAAQAVAIPADQRVLHTLPQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNAAQNIEKCVRRCGLEIDDIILEQLASAYSVL TDDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYTCALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLIQAELRRSGYE------DLVPAGIVLTGGTAKMEGAVELA EEIFHMPVRLGVPH-----SVRGLSDVVRNPIYSTGVGLLTYGLLKQSED LalTGNSNSSSNSYGDEPKAPV-lerfkkwvqgnf >gi|6715614|gb|AAA95992.2|_1:413 (U19797) FtsA [Pseudomonas aeruginosa] MASVQSGKMIVGLDIGTSKVVALVGEVtADGQLEVVGIGTHPSRGLKKGV VVNIESTVQSIQRAIDEAQQMAGCRIH-SAFVGIAGNHIRSLNSHGIVAI RDR--EVNPADIERVLDAAQAVAIPADQRVLHTLAQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNASQNIEKCVRRCGLEVDDIILEQLASAYSVL TEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYACALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEGAVELA EEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQKQSDG MsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|120568|sp|P06137|FTSA_ECOLI_1:386 CELL DIVISION PROTEIN FTSAgi|72941|pir||CEECA cell division protein ftsA - Escherichia coligi|40862|emb|CAA38871.1| (X55034) FtsA protein [Escherichia coli]gi|41494|emb|CAA26590.1| (X02821) ftsA protein [Escherichia coli]gi|216508|dbj|BAA01359.1| (D10483) cell division protein ftsA [Escherichia coli]gi|1786282|gb|AAC73205.1| (AE000118) ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGAAQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|146025|gb|AAA23811.1|_1:386 (M36531) cell division protein [Escherichia coli]gi|146032|gb|AAA23817.1| (K02668) ftsA protein [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGARQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|7380686|emb|CAB85276.1|_3:396 (AL162758) cell division protein [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQLENGAVQER----------eggggllarlkrwiensf >gi|7225649|gb|AAF40864.1|_3:396 (AE002398) cell division protein FtsA [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQPENGAVQER----------eggggllarlkrwiensf >gi|3023796|sp|Q44774|FTSA_BORBU_5:377 CELL DIVISION PROTEIN FTSAgi|7443770|pir||D70137 cell division protein (ftsA) homolog - Lyme disease spirochetegi|1165284|gb|AAA85623.1| (U43739) FtsA [Borrelia burgdorferi]gi|2688166|gb|AAC66648.1| (AE001137) cell division protein (ftsA) [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGEVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|1200208|emb|CAA78155.1|_5:377 (Z12164) ftsA [Borrelia burgdorferi]gi|1234875|emb|CAA65463.1| (X96685) ftsA [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGGVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|121570|sp|P07823|GR78_MESAU_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|90188|pir||A27414 dnaK-type molecular chaperone GRP78 precursor - Chinese hamstergi|304510|gb|AAA51448.1| (M17169) glucose-regulated protein [Cricetulus griseus] mkfpmvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|109893|pir||A37048_24:414 dnaK-type molecular chaperone grp78 precursor - mouse mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|2506545|sp|P20029|GR78_MOUSE_24:414 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|121574|sp|P06761|GR78_RAT_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) (STEROIDOGENESIS-ACTIVATOR POLYPEPTIDE)gi|279683|pir||HHRTGB dnaK-type molecular chaperone precursor - ratgi|203151|gb|AAA40817.1| (M14050) preimmunoglobulin heavy chain binding protein [Rattus norvegicus] mkftvvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|2598562|emb|CAA05361.1|_24:414 (AJ002387) BiP [Mus musculus] mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|6470150|gb|AAF13605.1|AF188611_1_5:395 (AF188611) BiP protein [Homo sapiens] meed--KKEDVGTVVGIDLGTTYSCVGVF--KNGRVEIIandqGNRITPS YVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRLIGRTWNdPSVQQDIKF LPFKVVEkktkPYIQVDIgGGQTKTFAPEEISAMVLTKMKETAEAYL--- ------------------------GKKVTHAVVTVPAYFNDAQRQATKDa gtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNILVFDLGGGTFDVSLltI DNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYKkktgkdvrkdnravqk lrrEVEKAKRALSSQHQA---RIEIESFYEGEDFSETLTRAKFEELNMDL FRSTMKPVQKVLEDSDLKKSDIDE------IVLVGGSTRIPKIQQLVKEF F----------NGKEPSRG------INPDEAVAYGAAVQAGVLSGDQDTG D-----------------lvlldvcpltlgietvggvmtkliprntvvpt kksqifstasdnqptvti >gi|6900104|emb|CAB71335.1|_23:413 (AJ271729) glucose-regulated protein [Homo sapiens]gi|7229462|gb|AAF42836.1|AF216292_1 (AF216292) endoplasmic reticulum lumenal Ca2+ binding protein grp78; BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|4033392|sp|Q90593|GR78_CHICK_21:411 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|2134273|pir||I50242 dnaK-type molecular chaperone - chickengi|211827|gb|AAA48785.1| (M27260) 78-kD glucose-regulated protein precursor [Gallus gallus] mrhlllallllggaraddee--KKEDVGTVVGIDLGTTYSCVGVF--KNG RVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRL IGRTWNdPSVQQDIKYLPFKVVEkkakPHIQVDVgGGQTKTFAPEEISAM VLTKMKETAEAYL---------------------------GKKVTHAVVT VPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNIL VFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYK kktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGEDF SETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IVLV GGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAVAY GAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgietv ggvmtkliprntvvptkksqifstasdnqptvti >gi|3122097|sp|O30991|FTSA_AGRTU_20:443 CELL DIVISION PROTEIN FTSAgi|2465464|gb|AAC45820.1| (AF024659) cell division protein [Agrobacterium tumefaciens] msffgsshfglprlkplss----KRSHIVSVLDIGSTKVVCMIgrltprq eseiLPGRTHKVEIIGIGHQRSRGVKSGVIADLDALEGVIRLSVDAAERM AGLTVD-SLIVNVSAGRLASDIYTASIDLGGQ--EVEASDLRKVLVAASQ QSMRQDRAILHSLPTGYSLDGERGIRDPLSMYGDLLGVDMHVVTVERTAL KNLELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTI SVFAEGRLIHTDAIGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALLNG AdERDMISIPPIGEDdrdQPSQVSRALVTRIVRARIEETLELIRDRIQKS GFS------PIVGKRVVLTGGASQLTGLPETARRILARNVRIGRPM---- -GVAGLPVAAKGPAFSTACGLMIYPQVADIEIHaaqggmfspFGNGSGRI ARVGQWLKESF- >gi|120567|sp|P28264|FTSA_BACSU_1:373 CELL DIVISION PROTEIN FTSAgi|2126939|pir||I39847 cell-division protein (septum formation) ftsA - Bacillus subtilisgi|142940|gb|AAA22456.1| (M22630) ftsA [Bacillus subtilis]gi|2633899|emb|CAB13401.1| (Z99111) cell-division protein [Bacillus subtilis] M---NNNELYVSLDLGTSNTKVIVGEMTGDSLNIIGVGNVPSEGLKKGSI VDIDETVHSIRKAFDQAERMVGFPLR-KAIVGVNGNYINIQDTNGVVAVS SENKEIQVEDVRRVMAAAQVVSVPHEQLIVDVIPKQFIVDGRDEITDPKK MLGVRLEVEGTLITGSKTILHNLLRCVERAGIEITDICLQPLAAGSAALS KDEKNLGVALIDIGGGSTTIAVFQNGHLTSTRVIPLGGENITKDISIGLR TSTEEAERVKKQLGHAYYDEAsEDEIFEVTVIGTNQKQTFTQQEAANIIE ARVEEILEIVSEELRSMGI-------TDLPGGFVLTGGQAAMPGVMSLAQ DVLQNNVRV------QGPNYIGV----RDPQYMTGVGLIQFACR------ --------------------nariqgrkigfkmpeeaiqeiavssseeqe qhhhqnevqqrpkgkqktqa >gi|1230567|gb|AAC05418.1|_5:400 (U46464) heat shock protein 70 [Ajellomyces capsulatus] mapa----------VGIDLGTTYSCVGIF--RDDRIEIIandqGNRTTPS FVAFtdtERLIGDAAKNQVAMNpaNTVFDAKRLIGRKFAdPEVQADMKHF PFKITDkggkPVIQVEFKGETKEFTPEEISSMVLTKMRETAEAYL----- ----------------------GGTVNNAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDKkaDGERNVLIFDLGGGTFDVSLltIE EGIFEvksTAGDTHLGGEDFDNRLVNHFVSEFKrkfkkispaeraralrr sptACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDL FRSTMEPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDF F----------NGKEPNKS------INPDEAVAYGAAVQAAILSGDT--- -SSKSTNEILLLDVAPLSlgietaggvmtplikrnttiptkksetfstfs dnqpgvliqvfegerart >gi|4033383|sp|O51928|FTSA_BUCAP_1:416 CELL DIVISION PROTEIN FTSAgi|2738588|gb|AAC46068.1| (AF012886) cell division protein [Buchnera aphidicola] MIISKNRKLVVGLEIGTTKVVTLVGEVlTNGKIKIIGIGICQSNGIDKGR INDLDAVISCIRESIHQAEIMANCQIT-SVYLSLSSKYINCPNEIGIVPI SED--EVTKEDIENVIHTAKSVKILNEHHILHVIPQEYSIDQQSGIKNPI GLSGTRMQVRVHLITCHQNMAKNIIKAVEKCDIKVDQVIFSGLASSKAVL TEDECKLGVCMIDIGGGTIDLITYIDGSIQDSQVIPYAGNIVTKDISYAF STSYSDSEKIKIKYGSAIKLSPgTSKNIDLSSKYGNFQKNLQQDTVIEVI DSRYNELLHLINNRILYVQKKLYKEGrKYQLTGGIVLTGGASTISFLTEC AEKIFQKKIRIAKPL-----NISGLTDNVTEPHYSTVVGLLHYGKEFYFD DTNQKREisfieKWFQKISNWFKK---ef >gi|1169751|sp|P45068|FTSA_HAEIN_1:419 CELL DIVISION PROTEIN FTSAgi|1073923|pir||H64185 cell division protein ftsA - Haemophilus influenzae (strain Rd KW20)gi|1574698|gb|AAC22797.1| (U32794) cell division protein (ftsA) [Haemophilus influenzae Rd] MVKGVETKTIVGLEVGTSKVVVVVGEVfPDGVVNVLGVGSCPSKGIDRGS ITDLDAVVGSIQRAIEAAESMADCQIM-SVTLAITGEHIQSLNESGFVPI AES--EVTQEEIDSALHTASSIKLPEGLSLLHVIPQEYAVDRQMNIKNPL GLQGVRLKAQVHLIACHQDWQNNLKKAVERCGLQVDKVVFSGFAATHSVL TEDEKDLGVCLIDFGAGTMNVMVYTNGALRFSKVIPYAGNIVTNDIAHAC TISRAEAERIKVNYASAFYPARlhGDKKIEVASIGGRAPRSLTKSDLSLI TSARYTELLGVVKDELDKLKAELEAKHiKFELIAGVVITGGGAQIEDLKE CASNVFHCQVRIASPL-----NITGLTDYVNRPQYSTVVGLLQYNYSNSD DDLISGSDdsegTFFESIWQGVKKIVNkvrsef >gi|3122114|sp|O30994|FTSA_RHIME_17:442 CELL DIVISION PROTEIN FTSAgi|2465468|gb|AAC45823.1| (AF024660) cell division protein [Sinorhizobium meliloti] mslfgsanfglprlkp-LPSKRSHVVSVLDIGSTKVVCMIgrltpraesq iLPGRTHSIEVIGIGHQKSRGVKNGVIADLDAVESVVRLAVDAAERMAGL TID-SLIVNVSAGRLQSDVYTATIDLGGQ--EVEANDLKKVLAAAGHQSL RTDRAILHSLPTGFSLDGERGIRDPLAMFGDVLGVDMHVLTAERPALKNL ELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTISVF AEGKLVHADAVGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALPNSAdE RDIISVPPIGEDdrdQPTHVPRALVSRIVRARIEETLELIRDRIQRSGFS ------PIVGKRIVLTGGASQLTGLPEAARRILARNVRIGRPL-----GV SGLPAAAKGPAFSTAVGLMIYPQVADLETHaagsgmfsTLGGNSRFARMG QWLKESF- >gi|3122103|sp|O07672|FTSA_ENTHR_1:382 CELL DIVISION PROTEIN FTSAgi|2222676|emb|CAA74237.1| (Y13922) ftsA [Enterococcus hirae] M---AKTGMYVGLDIGTTSVKVVVAEYIDSQMNIIGVGNAKSEGINRGII VDIDKTVQAIQRAVRQAEEKAGIQIK-GVSVGLPANLLEVENCQGMIAVN GDSKEITDEDVRNVASAALVRSIPPERQIVSILPQDFTVDGFEGIKDPRG MIGVRLEMYGLLFTGPKTIVHNIRKCVENAGLVVNELVITPLALTETILS DGEKDFGTIVIDMGGGQTTTAVMHDKQLKFTSLDQEGGEFVTKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGQSEPVKVDERYLSEVIS ARMEQIFNKAKEALDQIEA-------LELPGGIVLTGGAASLPGVVDLAQ EIFGVNVKL------YVPNQMGL----RNPVFTNVISIVDY--------- ---SAN-LSEVYQLAK----iavtgetvvahhttveqevtsydndsydap eetvydepeqkksdedvttk >gi|7494626|pir||T34037_27:424 heat shock 70K protein D - Caenorhabditis elegansgi|1947139|gb|AAC71123.1| (AF000264) C. elegans HSP-4, heat shock 70 KD protein D (SW:P20163) [Caenorhabditis elegans] mkvfsliliafvanaycdegasteke----EKMGTIIGIDLGTTYSCVGV F--KNGRVEIIandqGNRITPSYVAFsgdqgERLIGDAAKNQLTINpeNT IFDAKRLIGRFYNeKTVQQDIKHWPFKIVDksnkPNVEVKVGSETKQFTP EEVSAMVLTKMKQIAESYL---------------------------GHEV KNAVVTVPAYFNDAQKQATKDagsiAGLNVVRIINEPTAAAIAYGLDKkD GERNILVFDLGGGTFDVSLltIDSGVFEvlaTNGDTHLGGEDFDQRVMEY FIKLYKkksgkdlrkdnravqklrrEVEKAKRALSTQHQT---KIEIESL FDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDADMKKTDVHE---- --IVLVGGSTRIPKVQQLIKDYF----------NGKEPSRG------INP DEAVAYGAAVQAGVIGGVEN-------TGDVVLLDVNPL-tlgietvggv mtkligrntviptkksqvfstaadsqsavsiviyegerpm >gi|121567|sp|P11021|GR78_HUMAN_23:412 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|87528|pir||A29821 dnaK-type molecular chaperone HSPA5 precursor - humangi|386758|gb|AAA52614.1| (M19645) GRP78 precursor [Homo sapiens]gi|1143492|emb|CAA61201.1| (X87949) BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAK-ALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvllhvcpltlgie tvggvmtklipsntvvptknsqifstasdnqptvti >gi|7471223|pir||D75494_1:382 cell division protein FtsA - Deinococcus radiodurans (strain R1)gi|6458332|gb|AAF10210.1|AE001921_2 (AE001921) cell division protein FtsA [Deinococcus radiodurans] M---RENSIIVGLDIGTTKITTVIGEVaPDGTIDIIGEGSVPSEGMKRGS VINLERATQAIKQSLHAAERVSGVRAW-NVFVSVGGNHTKAMTSHGLAAI RRQQ-EISPPDVERAIENARAVPLDPSLEILHTIPQEYVVDGQEGIKNPV GMHGVRLEVDVHIVAGSAGPLLNLRRCVQEAGLQIEGFVLHSLASGLATL DHSEQNQTTVVVDMGGGTTDIGVFKRGNLAHSASIPIGGDHVTADLAQIL KIPMEEAEKVKRHYGAAIPELAdQELTLEITTA-SGATHAISAYELSRVI RPRVSEIYGLIRDEIDQA-LGPVELVA----QSVVLTGGGAQLPGAVDLA RERFRLPTRLGRPR-----GIHGLSDIVGDPAHACSVGMVLYGITQDG-- ---------------------rvpsglddggdpagyteyagrhdqgypqg gypapgyltaptggthvapqg >gi|3426021|dbj|BAA32395.1|_28:424 (AB016836) heat shock 70 kD protein cognate [Bombyx mori] mvkmrwslfalvlvvpavcaddkkekd----KDIGTVIGIDLGTTYSCVG VY--KNGRVEIIandqGNRITPSYVAFtqdgERLIGDAAKNQLTTNpeNT VFDAKRLIGREWSdQTVQHDVKFFPFKVVEknskPHVQVQTSQGDKVFAP EEISAMVLTKMKETAEAYL---------------------------GKKV THAVVTVPAYFNDAQRQATKDagtiSGLNVMRIINEPTAAAIAYGLDKkE GEKNVLVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEH FIKLYKkkkgkdirkdnravqklrrEVEKAKRALSSSHQV---KIEIESF FEGDDSSETLTRAKFEELNMDLFRSTLKPVQKVLEDADMNKKDVDE---- --IVLVGGSTRIPKVQQLVKEFF----------NGKEPSRG------INP DEAVAYGAAVQAGVLSGEQD-------TDAIVLLDVNPL-tmgietvggv mtkliprntviptkksqifstasdnqhtvtiqvyegerpm >gi|2039364|gb|AAB53051.1|_5:398 (U91560) heat shock protein 70 [Paracoccidioides brasiliensis] mapa----------IGIDLGTTYSCVGIF--RDDRIEIIaneqGNRNTPS FVAFtdtERLIGDAAKNQVAMNpQTVFEAKRLIGRKFAdPEVQADMKHFP FKITDkggnPKIQVEFRGEGKHFTPEGISSMFRRKKREIAESYL------ ---------------------GGTVNNAVVTVPAYFNDSQRQVTKDagli AGLNVLRIINEPTAAAIAYGLDKkaEGERNVLILDLGGGTFDVSLltIEE GIFEvksTAGDTHFGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlr tACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFR STMDPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF- ---------NGKEPNKS------INPDEAVAYGAAVQAAILSGDS----T SKSTNEILLLDVAPLSvgietaggvmtplikrnttiptkksetfstfadn qpgvliqvfegerart >gi|4009469|gb|AAC95439.1|_1:373 (AF068901) cell division protein FtsA [Streptococcus pneumoniae] M---AREGFFTGLDIGTSSVKVLVAEQRNGELNVIGVSNAKSKGVKDGII VDIDAAATAIKSAISQAEEKAGISIK-SVNVGLPGNLLQVEPTQGMIPVT SDTKEITDQDVENVVKSALTKSMTPDREVITFIPEEFIVDGFQGIRDPRG MMGVRLEMRGLLYTGPRTILHNLRKTVERAGVQVENVIISPLAMVQSVLN EGEREFGATVIDMGAGQTTVATIRNQELQFTHILQEGGDYVTKDISKVLK TSRKLAEGLKLNYGEAYPPLASKETFQVEVIGEVEAVEVTEAYLSEIISA RIKHILEQIKQELDRRRL-------LDLPGGIVLIGGNAILPGMVELAQE VFGVRVKL------YVPNQVGI----RNPAFAHVISLSEFAGQL------ -------------------tevnllaqgaikgendlshqpisfggmlqkt aqfvqstpvqpapapevep >gi|4433657|gb|AAD20834.1|_10:432 (AF125320) cell division protein FtsA homolog [Bartonella bacilliformis] mflslphgg---WRKTRFLTVLDVGSSKIVCLIaclhpleharhLYGRTH SIEILGFGMQRSCGIKSGVIMDMVAAERSIRLAVDAAEKMAGLVVD-SVI VNFSSSCLKSSFINGTVCLDGH--EVTPYDVRMALADVSRKAFDAEHHIV HTVPAFYALDGNKGIVDPIGMIGKTLGVNVHVVTAETAPLRNLETCINRA HLSVEAMVATPFASGLSVLINDEARLGAACIDLGGGTTTLSVFSEGKFVH TDVLPVGGHHVTLDVARGFSMSIEEAERLKIVYGSTFSMSAdDRCMINVL EIGNGHHETeYPRAVLGRIIRARVEEILEMMRDRLNRSGFG------HII GKRVILTGGASQLTGLPEMARNILGRNVRIGRPL-----GISRLPSFAKG ATFSSAVGLLIYPQLVGFEKKTVQTAvkylstgrgKYFQRVGQWLRKTF- >gi|1708306|sp|Q10265|HS71_SCHPO_5:398 PROBABLE HEAT SHOCK PROTEIN C13G7.02Cgi|2130224|pir||S67431 dnaK-type molecular chaperone SPAC13G7.02c - fission yeast (Schizosaccharomyces pombe)gi|7490622|pir||T37652 heat shock protein 70 - fission yeast (Schizosaccharomyces pombe)gi|1204169|emb|CAA93590.1| (Z69729) heat shock protein 70 [Schizosaccharomyces pombe] msks----------IGIDLGTTYSCVGHF--SNNRVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVAMNphNTIFDAKRLIGRRFNdPEVQSDMKHW PFKVIEkdgkPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFL----- ----------------------GGKVTDAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDRsnQHETNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDSRLVNHFAQEFKrknkkditgnaravrrl rtACERAKRTLSSSAQA---SIEIDSLYEGIDFYTSITRARFEELCADLF RNTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPRIQKLVSDFF ----------NGKEPCKS------INPDEAVAYGAAVQAAILVGDT---- -SEKTQDLLLLDVAPLSlgietaggvmtplikrnttiptkksevfstyad nqpgvliqvfegerart >gi|3323502|gb|AAC26629.1|_7:402 (AF045559) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850197|gb|AAC72001.1|_7:402 (U85648) heat shock protein 70 [Toxoplasma gondii]gi|4099058|gb|AAD09230.1| (U82281) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850199|gb|AAC72002.1|_7:402 (U85649) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|7462793|pir||G72328_1:419 hypothetical protein TM0835 - Thermotoga maritima (strain MSB8)gi|4981367|gb|AAD35917.1|AE001750_11 (AE001750) cell division protein FtsA, putative [Thermotoga maritima] MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >gi|3004463|emb|CAA04673.1|_8:401 (AJ001312) heat shock protein 70 [Tilapia mossambica] mqlkgva----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRT TPSYVAFtdtERLIGDAAKNQVALNpsNTVFDAKRLIGRKFDePVVQADM KHWPFKVISdggkPKIRVEYKGEDKAFYPEEISSMVLVKMKEIAEAYL-- -------------------------GQKVSNAVITVPAYFNDSQRQATKD agviAGLNVLRIINEPTAAAIAYGLDKgkSGERNVLIFDLGGGTFDVSIl tIEDGIFEvksTAGDTHLGGEDFDNRMVNHFVEEFKrkhkkdisqnkral rrlrtAFERAKRTLSSSSQA---SIEIDSLFEGVDFYTSITRARFEELCS DLFRGTLEPVEKSLRDAKLDKGQIHD------VVLVGGSTRIPKIQKLLQ DFF----------NGRELNKS------INPDEAVAYGAAVQAAILSGDT- ----SGNVQDLLLLDVAPLSlgietaggvmtalikrnttiptkqtqtftt ysdnqpgvliqvyegeramt >gi|1929868|gb|AAB58248.1|_33:428 (L46790) endoplasmic reticulum HSP70 homolog; grp78 [Pneumocystis carinii f. sp. carinii] mnkiqkkvvkhyfwivllllfalprsgrsqke----ESYGAVIGIDLGTT YSCVGVM--QSGRVEILpndqGNRITPSYVAFtneERLVGDAAKNQAPAN plNTIFDVKRLIGRRFDeADVQSDIKNFPFKVNHhegkPHVEVNIAGEKK TFTPEEISAMVLRKMKEIAESYL--------------------------- GRTVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGL DKkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQ VMAHFKTLFHqkhgvrldsdpkalgklkrEVEKAKRTLSSQMSA---RVE IESLYQGIDFSETLTRAKFEEINMHLFKKTMKPVEQVLKDGNVKKSDIDD ------IVLVGGSTRIPKVQQLLEEFF----------DGKKVSKS----- -INPDEAVAYGATVQGGILSHEEG-------VEDIVLVDVNPL-tlgiet tggvmtkliarntviptrksqifstatdnqavvliqvfegerpl >gi|1945628|emb|CAA72797.1|_5:396 (Y12079) heat shock protein 70 [Cryptococcus curvatus] mska----------IGIDLGTTYSCVAVW--QQDRVEIIandqGNRTTPS YVAFtdsERLIGDAAKNQVAMNpyNTVFDAKRLIGRKFEdAEVQSDMKHW PFKVISrlaSLHQVEYaRGE--EFSPEEISSMVLIKMKETAEAYL----- ----------------------GGTVSKAVVTVPAYFNDSQRQATKDagt iAGLEVLRIINEPTAAAIAYGLDKksEGEKNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDNRLVNHFVQEFKrknkkditsnaralrrl rtACERAKRTLSSAAQT---SIEIDSLYDGIDFYTSITRARFEELCQDLF RSTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPKIQKLVSDMF ----------SGREPNRS------INPDEAVAYGAAVQASILNGET---- -SEATQDLLLLDVAPLSlgietaggimtplikrnttvptkkseifstyad nqpgvliqvyegerakt >gi|2529289|gb|AAB95297.1|_10:404 (L44127) heat shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggsmtplikrsttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|2827905|gb|AAB99911.1|_10:404 (AF025477) heat-shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggvmtplvkrgttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|6322426|ref|NP_012500.1|KAR2_45:442 Homologue of mammalian BiP (GPR78) protein; member of the HSP70 gene family; Kar2pgi|121575|sp|P16474|GR78_YEAST 78 KD GLUCOSE-REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN HOMOLOG) (BIP)gi|72216|pir||HHBYK2 dnaK-type molecular chaperone KAR2 precursor - yeast (Saccharomyces cerevisiae)gi|171130|gb|AAA34454.1| (M31006) glucose regulated protein 78 precursor [Saccharomyces cerevisiae]gi|171771|gb|AAA34713.1| (M25394) protein-folding protein (KAR2) precursor [Saccharomyces cerevisiae]gi|171773|gb|AAA34714.1| (M25064) KAR2 protein precursor [Saccharomyces cerevisiae]gi|1008157|emb|CAA89325.1| (Z49309) ORF YJL034w [Saccharomyces cerevisiae] mffnrlsagkllvplsvvlyalfvvilplqnsfhssnvlvrgad--DVEN YGTVIGIDLGTTYSCVAVM--KNGKTEILaneqGNRITPSYVAFtddERL IGDAAKNQVAANpqNTIFDIKRLIGLKYNdRSVQKDIKHLPFNVVNkdgk PAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYL--------------- ------------GTKVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIV NEPTAAAIAYGLDKsDKEHQIIVYDLGGGTFDVSLlsIENGVFEvqaTSG DTHLGGEDFDYKIVRQLIKAFKkkhgidvsdnnkalaklkrEAEKAKRAL SSQMST---RIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVL QDSGLEKKDVDD------IVLVGGSTRIPKVQQLLESYF----------D GKKASKG------INPDEAVAYGAAVQAGVLSGEEG-------VEDIVLL DVNAL-tlgiettggvmtplikrntaiptkksqifstavdnqptvmikvy egeram >gi|4138103|emb|CAA75615.1|_1:370 (Y15422) cell division protein FtsA [Lactococcus lactis subsp. cremoris] M---AKSGLYTGVDIGTNTIKVLVAEYVSGEMNIIGVGNAKSDGLKNGII VDIEKVAQALRKAVNAAEERAGITID-RINVSIPANSLEMEPCQGMVPIV SDTKEITDNDVIQVVQNALMRGIVPEREIIAVETKEFTVDGFTGISDPRG MFGVRLEIRGVVYTGPKTLVHNVRKVVERAGLLVDNIVIAPLAMRQYVLT EGEREFGTIMVDLGAGQTTVSIVKDQSLKFTHTSPEGGDYVTKDISTVLN TSVSAAEDLKVNYGEASTERAsQDEYFLVDVVGKDEPEQITEYYLSQIIE ARMTQVFNRVRQDLEHGHT-------SETPGGLILVGGTAAMPGVVDLAT KILGMNARL------YVPGEMGL----RNPAFAQVISVVNY--------- --------------------igsrsdidvlvsqafsgdyaytaaeetyva pvqtiapqvttvadvendfy >gi|5834365|gb|AAD53931.1|AF179611_15_1:418 (AF179611) cell division protein FtsA [Zymomonas mobilis] MTPVKEGNLITALDIGSSKISALIVEKrADNVLQVLGSGQRESLGVRRGY LFDMESTEKAVREAVEQAERIAGTNIE-SVWVSFSAGGLISDLSSTEVAL NGQ--RIEEIHMETLLATGRDAIDPDGHMVLHAQPALYTLDGLKGVKSPI GLYADRLGVDIHVIAAEPSPVRYLELAVRSAHLEVQAIVAAPIAAGMSCL FAEERELGVALVELGAGVTNVSLFAGGLLVGLTSIPMGASDITDDIAAAF GTRRSDAERLKCFYGSAQSSPRdNHEMIDVAPIANDedviDPQRISRAQL IGVIRKRLDHWMDHIADALKSLGYN------GPVGRQVVLTGGGAELKGI ADYAQGVLGRSVRIGRPH-----GLVGLPDAHSGPAFATLTGLVLHAASE PFDLRPLSYNnrigsqksfmGSFKRLFQMFRR---ey >gi|7443772|pir||G71331_1:414 probable cell division protein (ftsA) - syphilis spirochetegi|3322667|gb|AAC65373.1| (AE001217) cell division protein (ftsA) [Treponema pallidum] M-----GEVIVGLDIGTESIRAVVAERlEGGALQVVGVGVGHSKGLRRGV VVNIENTVVGIHHAVEAAEMMSGIEVA-HCVVGLGGTHIEGRNLKGVVAV adkGKGHREVDQSDIDRVLEVACAVSLPPDRKILHVIPKVYSVDDQHGIT DPRNIIGVRLEGEVHMITGSATCMRSVIDCVKRANLHIDFLMHNGLAAVR SVLNDDERNVGCVLINIGGGTTDVIAMYKGSPVLITSIPVGGSQVTSDLA KVKNLPLETAERIKIKDGCCWIPLLeGEGSVLISSQGNRIPVEISKREIA EIIEARMCEVFTIVRDRLSTVETQ----SGRGIIENIILCGGGAQLTGAV ELASAIFDTPrVHLGIPG-----TLGGLAGEYRSPEFAVVLGLILEYTHK QGQRAyqgraEMERAGVFTKVKDIWRNLF- >gi|7465360|pir||C71873_1:442 septum formation protein - Helicobacter pylori (strain J99)gi|4155486|gb|AAD06487.1| (AE001520) septum formation protein [Helicobacter pylori J99] M---EHKEIVIGVDIGSRKICAIVAEFKDGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpissfresyhpKTK AIVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINNACaKAGLDNDK HILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIM IQSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNS IRYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFESGaetPSQ SVQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGFE--- ---EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLATPV--EKYNIMG MFEDLKDPRFSVVVGLILYkaGGHTNYERDskgiirYHESDDYIRKAHQS NPTPH-ihsspternlsdlktpsaplntaknddflpikpteqkgffqnll dkiski >gi|1708633|gb|AAB38076.1|_32:427 (U40994) PrBiP precursor [Pneumocystis carinii f. sp. ratti] miiiriflyklffwlnflifvlprygwaqke----ESYGTVIGIDLGTTY SCVGVM--QSGRVEILandqGNRITPSYVAFtndERLVGDAAKNQAPANp lNTIFDVKRLIGRRFDdVDVQADMKHWPFKVHHqdgkPHVIVNIAGEKKT FTPEEISAMVLRKMKEIAESYL---------------------------G RTVTHAVVAVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGLD KkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQV MSYFKTIFHqkngvrldddpkalgklkrEVEKAKRILSSQMSA---RVDI ESLYQGIDFSETLTRPKFEEINMHLSKKTMKPVEQVLKDGNVKKSDIDD- -----IVLVGGSTRIPKVQQLLEDYF----------DGKKVSKS------ INPAEAVAYGATVQAGILSLEEG-------VEDIVLVDVNPL-tlgiett ggvmtkliarntviptrksqifspasdnqavvliqvfegerpl >gi|7443771|pir||D70347_6:413 cell division protein FtsA - Aquifex aeolicusgi|2983169|gb|AAC06770.1| (AE000694) cell division protein FtsA [Aquifex aeolicus] mkrla-----------ALDIGSQKTVFVIGERdSYGDIHIIGFGEVPSRG IVKGVINDLSEAKGSILRAMKEAEAMAGLKVR-EVVYNVSGGTTKngtvk SQNVKDTISISTKSSEIEESHIQRLHERCLMKAKEEGYEIVYTAPRKYIL DDHTEVKNPLGLVGSKLSVEMHVVKVSTTILRNLEKAIREVGLNPVGRTV NAIASADSVLTHDEKEDGVLLLDMGAGLTDYSLYTEGRPYITGVVPFGGI NITKDLSYMLKIDTETAESVKVNHGVAFESLVdDEDVVKIKPRGEDREIP IQKKQVAEIIQSRVEEIVEKVFKEIKARGV-PL----NQINSGIVVTGGT ANLKGIRELIEHMTGLPVRIGLPQ-----GIVGLREKIENPKYATVCGLL RQAFVSGTIDItestNSNTGNFFKNLSERFKKWFEell >gi|3122110|sp|O25629|FTSA_HELPY_1:441 CELL DIVISION PROTEIN FTSAgi|7463911|pir||B64642 cell division protein - Helicobacter pylori (strain 26695)gi|2314120|gb|AAD08024.1| (AE000606) cell division protein (ftsA) protein [Helicobacter pylori 26695] M---EHKEIVIGVDLGSRKICAIVAEFKEGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpmphfgeyhpKTKA IVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINSACaKAGLDNDKH ILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIMI QSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNSI RYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFEGGeetPSQN VQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGLE---- --EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLAAPV--EKYNIMGM FEDLKDPRFSVVVGLILYkaGGHTNYERDskgvirYHESDDYTRTAHQSS PTPH-ihsspternlsdlkapsaplntaknddflpikpteqkgffksfld kiskf >gi|7495875|pir||T19211_7:401 hypothetical protein C12C8.1 - Caenorhabditis elegansgi|3874268|emb|CAB03871.1| (Z81467) predicted using Genefinder; Similarity to heat shock protein 70's; cDNA EST EMBL:D64554 comes from this gene; cDNA EST EMBL:D67599 comes from this gene; cDNA EST EMBL:C13707 comes from this gene; cDNA EST yk395h8.3 comes from this gene; cDNA E> mstcka----------IGIDLGTTYSCVGIY--QNGKVEILanseGNKTT PSYVAFtdtERLVGDAAKDQAARNpeNTVFDAKRLIGRRFDeETVQSDIK HWPFTVKGkqgkPVVEVEVKGEKREFNAEEISAMVLQKMKETAEAVL--- ------------------------GHSVRDAVITVPAYFNDSQRQATKDa atiAGLNAIRIINEPTAAALAYGLDKgiTDEKNILIFDLGGGTFDVSIls IAEGSIFevksTAGDTHLGGEDFDSRVLQHFMTEFKrktgkdissnprai rrlrtACERAKRTLSSSTEA---TVEVDSLFDGTDFYSKITRARFEELCA DLFRKTLEPVEKALRDAKTDKGRIDE------VVLVGGSTRIPKIQKLLK EFF----------NGKDLNCS------INPDEAVAFGAAVQAAVLSGVK- ----DDTIKDVLLVDVVPLShgietaggvmtnlidrntripakasktftt yadnqpgvsiqvyegeramt >gi|3122101|sp|O07111|FTSA_ENTFA_1:369 CELL DIVISION PROTEIN FTSAgi|2149908|gb|AAC45638.1| (U94707) cell division protein [Enterococcus faecalis] -------------------------------MNIIGVGNAKSDGLNRGIV VDIDQTVQAIQRAVRQAEEKAGIQIK-SVNVGLPANLLEVESCQGMIAVS SESKEITDEDVCNVASAALVRSTPPERQIVAILPQDFTVDGFEGIKDPRG MLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGINELVITPLALTETILT DGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGKSEPVRVDERYLSEIIE ARVEQILRKSKEVLDEIDA-------FELPGGVVLTGGAASIARYCRFRR KRFLeANVKL------YVPNHMGL----RNPVFANVISIVEYSAQLNDIY HiakyaiPGEKSKPAQSV---------avqqevrydtyaeqpqeeyeefn eresgekvtgkikdffsnifd >gi|311895|emb|CAA48873.1|_30:418 (X69121) heat shock protein [Plasmodium falciparum] mkqirpyilllivsllkfisavdsniegp---------VIGIDLGTTYSC VGVF--KNGRVEILnnelGNRITPSYVSFvdgERKVGEAAKLEATLHptQ TVFDVKRLIGRKFDdQEVVKDRSLLPYEIVNnqgkPNIKVQIKDKDTTFA PEQISAMVLEKMKEIAQSFL---------------------------GKP VKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAALAYGLDKK EETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDFDQRVMDY FIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST---QIEIEDI LEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSKIDE---- --IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG------INP DEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlgietvggi mtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|6968152|emb|CAB72969.1|_1:407 (AL139076) cell division protein ftsA [Campylobacter jejuni] M-----ILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGAI TNIELASKSIEEAVRSAEMMSGVHYD-RVVVSISGAYTKSVDSIGVVNIP NH--EIGIKEIHRAVSTAKhTANLPSGYEIIHVLPYNFKVNDLEHVDDPL GMSGNRLEVSTHIVISQESHIKNLKKAVELADLRVDNIVLSGYASAIACL DDSEKELGAVLIDMGGAICDMVVHTGNSIRYNDCLQIGSINITQDLSMAL HTPLKEAEKIKLNYAALSQQP--NTLIQIPSMGDERKVNeVSLDIISNVI YARAEETLMILAKILSDNRYA------NAIGGGVVLTGGMTKLAGIDELA PATFDnRSVRLA---TARKDLITGFSEIFNDPENTCAIGLCLYgaGYFTP YELDsneKLRYKGEIENFNRQIKQDI-vlqkdaeseiksdffdenlqend tiaiqeqldfkepkekkpsvfsniwhk >gi|5738968|dbj|BAA83426.1|_1:366 (AB031071) heat shock protein 70 [Toxoplasma gondii] --------------------------------------TTPSYVAFtdtE RLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMKHWPFKVIAgp gdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL------------ ---------------GKEVKEAVITVPAYFNDSQRQATKDagtiAGLSVL RIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLltIEDGIFEvk aTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsralrrlrtQCER TKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELCMDYFRNSLLP VEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLITDFF------ ----NGKEPCRS------INPDEAVAYGAAVQAAILKGVT-----SSQVQ DLLLLDVAPLSlgletaggvmtkliernttiptkksqtfttyadnqpgvl iqvyegeramt >gi|7467594|pir||G71679_3:411 cell division protein ftsa (ftsA) RP251 - Rickettsia prowazekiigi|3860813|emb|CAA14713.1| (AJ235271) CELL DIVISION PROTEIN FTSA (ftsA) [Rickettsia prowazekii] mk----EKISNFVTFDFGSSKIAVIAAYIsKKGEIKVASQNLHHSKGIKS GVILDLKNAETSILTAIYALEKDCGKNIN-KIILSLSGAETKSYYINYTI KINGQ--TVTQQDIKKLLQKALVEFKFKNQEIIHYFPLEFTLDNNS-VEN PIGMYGRALSCELHIISARSNLLSNIVQCFAKCHVEVTNITLAIYASAIS CLTNDEKNLGVLIIDIGDQTTSCGIFFADKLIYTWHLNIGSFHISLDIAK VFGIDLVTAEKLKILYGNAIIPLFeKDSIINMDDFHVDIPHNlnisLTIY RLAEVISARAEEILSMVKAEYDKATKGQFEVFR------VVITGGGSQLR GLKELSNKIFAKQSRIGKPE-----IIAGFTEDYNPAMYSAAIGMLKIHA LKQQKALshirLDENINFFKKAFDWFKENI- >gi|2921217|gb|AAC05357.1|_2:368 (AF026512) heat-shock protein Hsp70 [Beroe ovata] n-------------------------------------RTTPSYVAFndt ERLIGDPAKNQVAMNptNTIFDAKRLIGRKFTdSIVQSDMKLWPFDVVDe sgrPKIKVTHQCKDKTFFAEEISSMVLGKMKETAEAYL------------ ---------------GKTVNDAVITVPAYFNDSQRQATKDagviARINVL RIINEPIAAAIAYGLDKkgntQGERNVLIFDLGGGTFDVSIlsIEDGIFE vksTNGDTHLGGEDFDNRMVNHFKDEFRrehkmdmsnnkrslrrlrtACE RAKRTLSSSAQA---SIEIDALYEGIDFYTTLTKPRFEELNNDLFKKTTE CVEKAVRDAKMEKGEIHE------IVLVGGSTRIPKIQKLLEDFF----- -----KGKSLNKS------INPDEAVAYGAAVQAAILSGDK-----SEEV QDLLLLDVAPLSlgietaggvmtslikrnatiptkqsqkfttyadnqpgv liqvfegeramt >gi|3122010|sp|P94317|DNAK_BRAJA_4:393 DNAK PROTEIN (HEAT SHOCK PROTEIN 70) (HSP70) mgk---------VIGIDLGTTNSCVAVM--DGKNAKVIenseGMRTTPSI VAVtddgERLVGQPAKRQAVTNpeRTFFAVKRLIGRRYDdPMVEKDkklV PYKIVKASNGDAWVEADGQ--TYSPSQVSAFILQKMKETAEAHL------ ---------------------GQKVDQAVITVPAYFNDAQRQATKDagki AGLEVLRIINEPTAAALAYGLDKTKTGTIAVYDLGGGTFDISIleIGDGV FEvksTNGDTFLGGEDFDMRLVGYLADEFQkeqginlrndklalqrlkeA AEKAKIELSSTT-----QTEINLPFITADqtGPKHltmkLTRAKFEALVD DLIQKTVEPCRKALKDAGVTAGEIGE------VVLVGGMSRMPKVQEVVK QLF-----------GKEPHKG------VNPDEVVAIGAAIQAGVLQGD-- -------VKDVLLLDVTPLSlgietlggvftriidrnttiptkksqvfst aednqnavtirvfqgerema >gi|5805059|emb|CAB53636.1|_4:409 (AJ249201) cell division protein [Prevotella albensis] mpk-------EFIVAIELGSSKMTGIAGQKnLDGSISVLSIvEEDSTSCI RKGVVYNIEKTGQCLTSIMQKLKNNLKQDIT-HVYVGVGGQSIRSVKNVI VKDLPSAT-QVTQEMVNELMDANRNMSYP-DLEILDAATQEYKLDNQF-Q LDPVGIQCTHLEGNFLNILWRKNFYRNLNTCFDNAGIAIAEMYLAPLALA DSTLTDAEKRSGCVLIDLGADTTTVSVYYKNILRHLAVIPLGGSNITKDI A-SLQMEDSDAEKMKIKYASAFTE---NNEIDNtLSYSIDADRQIESRKF IEIVEGRVEEI-------IENAWFQVPNEYADKLLGGIILTGGGSNMPNI EKAFRSHTHiEKIRIAKFVtqaiNSKDPKITEHDGKLNTILGLLAKGDMN CAGGELHDDLFTQSEqkpTTTADIHQKPRDL--kettgtgvvmtaaekqk aeeearkkkeeeeeiarveaeklemeeaarrke >gi|1236795|gb|AAA93010.1|_1:286 (U25190) PBGRP [Plasmodium berghei] -------------------------------------------------- -------------------------------------------------- DKDTTFAPEQISAMVLEKMKEIAQSFL----------------------- ----GKPVKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAAL AYGLDKKEETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDF DQRVMDYFIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST--- QIEIEDIVEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSK IDE------IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG-- ----INPDEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlg ietvggimtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|436763|dbj|BAA02189.1|_1:316 (D12692) heat shock protein [Theileria sergenti] -------------------------------------------------- --------------------------------MKHWPFKVTNgpngkPNI EVTFQGERKTFHAEEISSMVLTKMKEIAEAFI------------------ ---------GKTVKDVVITVPAYFNDSQRQATKDagtiAGLNVMRIINEP TAAAIAYGLDKksGGEKNVLIFDLGGGTFDVSIltIEDGIFEvkaTAGDT HLGGEDFDNLLVEHCVRDFMrlnngknlssnkralrrlrtHCERAKRVLS SSTQA---TIELDSLYEGIDYNTTISRARFEELCNEKFRSTLVPVEKALE SSGLDKRSIHE------VVLVGGSTRIPKIQSLIKSFF----------NG KEPCRS------INPDEAVAYGAAVQAAILSGNQ-----SEKIQELLLLD VAPLSlgletaggvmtvlikrnttiptkknqifttnedrqegvliqvfeg eramt >gi|4164594|gb|AAD05564.1|_5:285 (AF111194) heat shock protein 70 [Paracoccidioides brasiliensis] sara---------------------------------------------- -------------------------------------------------- ----------------SMVLTEVRETAESYL------------------- --------GGTVNNAVVTVPAYFNGSQRQATKDagliAGLNVLRIINEPT AAAIAYGLDKkaEGERNVLIFDLGGGTFDVSLltIEEGIFEvksTAGDTH LGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlrtACERAKRTLSSA AQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVLRDA KIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF----------NGKE PNKS------INPDEAVAYGAAVQAAILSGDS----TSKSTNEILLLDVA PLSvgietaggvmtplikrnttiptkksetfstfadnqpgvliqvfeger art >gi|3122104|sp|O07827|FTSA_PORGI_4:408 CELL DIVISION PROTEIN FTSAgi|2209034|dbj|BAA20534.1| (AB004555) FtsA [Porphyromonas gingivalis] msrM-----NTIYAVIDLGSWYIRGMVARKmEDGRVSPISFYEEPaNNCI RHGCVHNIDEAAAIIRRIVNQLNENLEDNTHiTSLYVGVGGQSIASQEFI VRKAMVPEGEVIRTEHIESLWAEMRGASFP-DKEVLDVTDPLFYVDGKQE IQ-AKGVFCHELEARFQLITARRSVKQNIRIAIEErLGLRLAGILVTPLC EAQVLLSDDELTLGCCYVNIGAGCTSVSIYKNRLLAMLRVLPMGGYNVTR DLT-SLRLTEQEAENMKLNHVSMINDNKSNGSFRMTFADKFSEREFRSSE VNRLAKARMDEITANYLNILRLSGLL------EDIGAGIILNGGGTKINN YMAAMKKILGevTPAKI----RMDRIDTDNAISFIEG--HISTIGLAYKA TQPCTDYITTNLGELVSQIETKEETPANdtvqdlfaqdrqaerkeneqrd ntdrqredtprqtlkkkektgpsfgd >gi|729993|sp|P39751|MBL_BACSU_1:333 MREB-LIKE PROTEIN (MBL PROTEIN)gi|2120019|pir||I40531 cell shape determining protein mbl - Bacillus subtilisgi|531460|gb|AAA67878.1| (U12962) Mbl protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVPVLVA------- ----------ENPMDCVAIGTGVM----------------LDNMDKLPKR KLS >gi|6983753|emb|CAB75392.1|_5:327 (AL139298) rod shape-determining protein [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigrtpgNIVAVRPLKDGVIADFEITERMLRYFILKIHKR- RYLARPRVVVCVPSGITGVE------------------------------ ------------------------------------------------RR AVIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVA VISLGGIVTAQSIRVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGS AYDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAVKTT LDKC---PPELSGDIMDRGIVLTGGGALLRGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|266568|sp|Q01465|MREB_BACSU_5:331 ROD SHAPE-DETERMINING PROTEIN MREBgi|322181|pir||A45240 rod shape-determining protein envB - Bacillus subtilisgi|143212|gb|AAA22605.1| (M95582) putative [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFARkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|7444226|pir||D69660_5:331 rod shape-determining protein envB - Bacillus subtilisgi|142855|gb|AAA22397.1| (M96343) MreB protein [Bacillus subtilis]gi|2635268|emb|CAB14763.1| (Z99118) cell-shape determining protein [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFTRkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|417314|sp|P32444|MBL_BACCE_1:332 MREB-LIKE PROTEIN (MBL PROTEIN)gi|484937|pir||PN0441 mreB protein - Bacillus cereusgi|49005|emb|CAA44237.1| (X62374) MREB [Bacillus cereus]gi|4584137|emb|CAB40597.1| (AJ010138) mreB-like protein [Bacillus cereus] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVAIdrntgkvlavg eearsmvgrtpgNIVAIRPLKDGVIADFEITEAMLKYFINKLDVK-SFFS KPRILICCPTNITSVE---------------------------------- --------------------------------------------QKAIRE AAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSM GDIVTSSSIKMAGDKFDMEILNYIKRKYKlligerTSEDIKIKVGTVFPG ARsEELEIRGRDMVTGLPRTitVCSEEITEALKENAAVIVQAAKGVLERT ---PPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIA------- ----------ENPMHCVAVGTGIM----------------LENIDRLPKR AL-r >gi|3122102|sp|O07325|FTSA_STAAU_2:367 CELL DIVISION PROTEIN FTSAgi|2149897|gb|AAC45628.1| (U94706) cell division protein [Staphylococcus aureus] m-----EEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGL IDDFDIARQAIKDTIKKASIASGVDIK-EVFLKLPIIGTEVYDESNEIDF YEDT-EINGSHIEKVLEGIREKNDVQETEVINVFPIRFIVDKENEVSDPK ELIArHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYG-SI LTATEKELGACVIDIGEDVTQVAFYERGELVDADSIEMAGRDITRRYC-- --TRIKalLMKLLKKLNTNMVMHSMILLQIKISSLLNRLIVMkqysIPQK DLSDFIEARVEEIFFEVFDVLQDLGL-------TKVNGGFIVTGGSANLL GVKELLSDMVSEKVRI------HTPSQMGI----RKPEFSSAISTI---- ---------------------------sssiafdelldyvtinyhdneet eedvidvkdkdnesklggfdwfkrktn >gi|7444221|pir||E71826_10:342 rod shape-determining protein - Helicobacter pylori (strain J99)gi|4155891|gb|AAD06861.1| (AE001551) ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLVRDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|2920363|gb|AAC04558.1|_10:342 (U95641) rod shape-determining protein [Helicobacter pylori] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KNQVREISSALRSVLEEV---KPDLVKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444224|pir||E64691_10:342 rod shape-determining protein - Helicobacter pylori (strain 26695)gi|2314543|gb|AAD08416.1| (AE000637) rod shape-determining protein (mreB) [Helicobacter pylori 26695] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKVHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEstlsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLAKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444223|pir||E71316_1:326 probable rod shape-determining protein (mreB) - syphilis spirochetegi|3322787|gb|AAC65484.1| (AE001226) rod shape-determining protein (mreB) [Treponema pallidum] MFFLRRFSADVGIDLGTCNTIIYVEGRgiVVNEPSVVAVergtksvvavg sdakrmlwktpgNIVAIRPLKDGVIADMDTTEKMIRYFISKILPR-HRLI KPRMVIGIPSCITDVE---------------------------------- --------------------------------------------CRAVHE SASKAGAGEVEVLEESLAAAIGANIPIEEPAGNMVCDIGGGTTEVSVISL LGMVVTNAIRVGGDEFDQAIIKHVRSVHNliigeqTAERLKIEIGNASPE KNiEKVEVKGTDAITGLPRRleIDSVEVREALKEPITQIVEEIKRTLART ---PPELAADIVERGIVMTGGGSLLKGLPKLISKETHVPVILA------- ----------ENPMNCVAIGAGRYH------------------------- ---evykdisgdrslyaglns >gi|2636166|emb|CAB15658.1|_1:302 (Z99122) MreB-like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVP----------- -------------------------------------------------- ---gprcwkilwia >gi|730060|sp|P39763|MREH_BACSU_7:322 MREBH PROTEINgi|7444227|pir||C69660 cell-shape determining protein mreBH - Bacillus subtilisgi|520840|dbj|BAA07047.1| (D37799) mreBH [Bacillus subtilis]gi|2633818|emb|CAB13320.1| (Z99111) cell-shape determining protein [Bacillus subtilis]gi|3282132|gb|AAC24922.1| (AF012285) unknown [Bacillus subtilis] mfqste----------IGIDLGTANILVYSKNKgiILNEPSVVAVdtttk avlaigadaknmigktpgKIVAVRPMKDGVIADYDMTTDLLKHIMKKAAK SIGMSFRkPNVVVCTPSGSTAVE--------------------------- -------------------------------------------------- -RRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTT EVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNlligerTAEQVKME IGHALIEHIpEAMEIRGRDLVTGLPKTimLQSNEIQDAMRESLLHILEAI RATLEDC---PPELSGDIVDRGVILTGGGALLNGIKEWLTEEIVVPVHVA -----------------QNPLESVAIGTGR-------------------- ----------slevidklqkaik >gi|1684654|emb|CAB05381.1|_1:300 (Z82987) MreB like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELK------------- -------------------------------------------------- ---v >gi|2253079|emb|CAA74597.1|_5:326 (Y14206) merB [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigarrNIVAVRPLKDGVIADFEITERMLRYFILKIHKR-R YLARPRVVVCVPSGITGVE------------------------------- -----------------------------------------------RRA VIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVAV ISLGGIVTASP-SVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGSA YDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAgSRTT LDKC---PPELSGDIMDRGIVLTGGGALLPGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|6967753|emb|CAB72744.1|_13:339 (AL139074) homolog of E. coli rod shape-determining protein [Campylobacter jejuni] mildqligffss---------DMGIDLGTANTLVLVKDKgiVINEPSVVA VererydskakilavgkeakdmvgktpgNIEAIRPMKDGVIADFDMTEKM IRYFIEKTHRR-KSFLRPRIIISVPYGLTQVE------------------ -------------------------------------------------- --------------RKAVREsalsAGAREVFLIEEPMAAAIGASLPIQEP KGNLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNl iigerTGEEIKITIGSAIQLPKeLSMVVKGRDQVSGLLSRieLTSEDVRE AMREYLKEIADALKMVLEMM---PPDLASDIVENGVVLTGGGALIRGLDK YLSEIVRLPVYIA-----------------DEPLLAVAKGTGKA------ ----------LEEISLL------qqltnee >gi|7444225|pir||B70189_16:347 rod shape-determining protein (mreB-1) homolog - Lyme disease spirochetegi|2688645|gb|AAC67059.1| (AE001171) rod shape-determining protein (mreB-1) [Borrelia burgdorferi] mellwktfrevvlnl---FKSFLIDIGIDLGTCNTLVYIKDYgvVMSEPS VVAIditkgnkvvavgrnakkmlwktpeNIKAVRPLRDGVIADIENTEKM IKYFINQIFSRKKLFFKPRMVIGVPTCITEVE------------------ -------------------------------------------------- --------------RRAVKEsamnAGAREVKVIEESLAAAIGSDIPIFEP TGHMVCDIGGGTTEISVISLGGMVVSRAIRTGGDEFDESIIKYMRNSHNi iigqqTAEKLKIKIGNVYPDIQnlrvEKIDIKGTDAVTGLPRKqlVDSME VRESLQEPINVVVDEVKRTLGAT---PPELATDIVERGIILTGGGALLKG LNRLLSKETGVPVYVA-----------------DNPLLSVAVGAGLFYDY AN------------------------ridiskniysfine >gi|300265|gb|AAB26551.1|_43:346 HSP68=68 kda heat-stress DnaK homolog [Lycopersicon peruvianum=tomatoes, Peptide Mitochondrial Partial, 580 aa] ellvgtpakrqavtnptntlsgtkrligrrfddpqtqkemkm-------- -------------------------------------------------- ------------------------VPYKIVKGSNGDAWVEANGQ--QYSP SQIGAFILTKMKETAEAYL---------------------------GKSI NKAVITVPAYFNDAQRQATKDagriAGLDVQRIINEPTAAALSYGMNS-K EGLVAVFDLGGGTFDVSIleISNGVFEvkaTNGDTFLGGEDFDNALLEFL VSEFKrtegidlskdklalqrlreAAEKAKIELSSTS-----QTDINLPF ITADasgakhLNITLTRSKFETLVNNLIERTRNPCKNCLKDAGVSLKDVD E------VLLVGGMTRVPKVQEIVSEIF-----------GKSPSKG---- --VNPDEAVAMGAALQGGILRGD---------VKELLLLDVTPLSlgiet lggiftrlinrnttiptkksqvfstaadnqtqvgikvlqgerema >gi|7579069|gb|AAF64243.1|AF252299_1_1:252 (AF252299) hsp70 BiP [Entamoeba invadens] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------TVPAYFNDAQRQATKDagkiAGLNVLRILNEPTAAAM AYGLNKvTGEKNILVFDLGGGTFDVSLlnIEENVFDvvsTSGDTHLGGSD FDQKVTEYLLDVFKrkygkdvskdkravtrlrrEAERAKRTLSVQQQD-- -RIEIENLADGVDFSFTLTRAKFEELNMDLFKSTIAPVKKVLEDSKMSKG AIHE------VVLVGGSTRIPKVQQLLKEFF----------NGKEPSRG- -----INPDEAVAYGAAVQGGVLSNIKG-------TEDIVLLDTTPL-tl gietvggvmtsliprnthipisksqifstyqdnqqsvtiqvfegeram >gi|1346046|sp|P47203|FTSA_PSEAE_7:230 CELL DIVISION PROTEIN FTSA tssssr-------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------------------------------LAS AYSVLTEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTND IAMALRTPTQYAEEIKIRYACALAKLAgAGETIKVPTVGDRPPGELSRQA LAEVVEPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEG AVELAEEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQ KQSDGMsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|7462820|pir||A72273_1:382 hypothetical protein TM1277 - Thermotoga maritima (strain MSB8)gi|4981835|gb|AAD36352.1|AE001783_3 (AE001783) cell division protein FtsA, putative [Thermotoga maritima] --------MIFALDVGTRKIAGLIAVEEKGTIRIVdsELIEHKTRTMFDG QVHDVLGVAETVKEVKERLESRNEIELK-EVAVALAGRFLKTQVGEAELD FSKVG-HITREDVMKLEIEAVtkaQESVEEDFFCVGYSVVEYRLDGMW-M KKLEGHRGGKAYVKVVSAFLPVHVVDSLMRVLETVGLTPVHVTLEPIAAM DLTVPEDLRYLNISLVDVGAGTSDIAISKEGTVVAYGMIPMAGDEITEAI GKKFLLDFQTAEHVKRTVFS-------EERVKVKNI-LDREIELNVREVS EAIKPVVDQITTEISTVVTELN--------GGAPSVVMVVGGGAKVPGFV ESLARKLDLPlDRV----SLKSVESTGLVEdltgKVKGSEYITPVGIAYS AMRNRGSV--------FSQVF--------vngvpvklmggvgrysvmqvl iqagyrfsslvggemisfelngktllrpk >gi|2829291|gb|AAC00520.1|_1:280 (AF044413) HSP70 [Schistosoma japonicum] -------------------------------------------------- -------------------------------------------------- ---------QIGAFVLIKMKETAESYL----------------------- ----GSKVKNVVITVPAYFNDSQRQATKDagkiAGMEVLRVINEPTAAAL AYGLDRTDDKTIAVYDLGGGTFDISVleIQKGVFEvksTNGDTFLGGEDF DNELLRFLVKEFQreqgidvtkdpmalqrvkeAAEKAKIELSSSL----- QTDINLPYLTMDkaGPKHmhlkLTRAKLEHLVEPLIKRTIDPCNKALKDA EVKASDIGE------IILVGGMTRMPKVQETVEKIF-----------GKT PSKS------VNPDEAVAMGAAIQGGVLAGD---------VTVVLLLDVT PLSlgietlggvmtklinrnttiptkksqvfstaadgqtqveikvyqger ema >gi|2253225|gb|AAB62884.1|_3:225 (AF004553) 70 kDa heat shock protein [Paracoccidioides brasiliensis] ar------------------------------------------------ -------------------------------------------------- -------------------------------------------------- ---------------------------------------------AAIAY GLDKkaEGERNVLIFDLGGGTFDVSLltIEEAIFEvksTAGDTHLGGEDF DNRLVNHFVNEFKrtdkkdlffnaralrrlrtACERAKRTLSSAAQT--- SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVVRDAKIDKSS VHE------IVLVGGSTRIPRIQKLVSDFF----------NGKEPNKS-- ----INPDEAVAYGAAVQAAILSGDT----TSKSTNEILLLDVAPLSvgi etaggvmtplikrnttiptkksetfstfadnqpgvliqvfegerart >gi|2706556|emb|CAA78755.1|_1:221 (Z15037) heat shock protein 70 [Aplysia californica] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------YFNDAQRQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------INPDEA------------------------------------- >gi|345402|pir||A44261_1:209 dnaK-type molecular chaperone HSP70a - California sea hare (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------RQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------------------------------------------------- >gi|2661598|emb|CAA15711.1|_14:456 (AL009196) /prediction=(method:""genefinder"", version:""084"", score:""150.41""); /prediction=(method:""genscan"", version:""1.0""); /match=(desc:""HEAT-SHOCK PROTEIN 110 KD (KIAA0201)"", species:""HOMO SAPIENS (HUMAN)"", ranges:(query:12688..12861, t>gi|7290308|gb|AAF45769.1| (AE003423) EG:25E8.1 gene product [Drosophila melanogaster] mklvlllsallag-IALSQGAAVMSVDLGSEWMKVGVvspgvpmeialnR ESKRKTPAILAFrdgtrtigEDAQTIGIKdpnSAYGYLLDLLGKTIDNPI VDLYRK-----------RFPYYNIVGDPERNTVVFrKSDTDEFSVEElVA QLLVKAKQFAQESVQQP----------------------------ITECV LTVPGYFGQAEREALLSaaqlANLKVLQLINDYAAVALNYGVFHRGEINe taqyFLFYDMGAYKTSAAVVSYQLVKdkqtreINPVVQVlgvgydrtlGG LEIQLRLRDYLAQEFNalkktktdvttspralaklfkEAGRLKNVLSANT EF---FAQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSH LS------LDVINQVILFGGGTRVPRVQETIKAVI--KQELGKNLNADES ATMGAVYKAADLSagfkvkKFVVKDATLFPLQVSFERDPGDGAA-VKQVK RALFALMNpypqkkvitfnkhtddfefyvnyadldryskeeiaalgslnv tkvqlkqv >gi|1854603|gb|AAB48222.1|_1:215 (U49134) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGLDKKKDETIAVFDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDDI DEALVGWIIDEFKkdqgidlaqdkmalqrlkEPSRAKVELSSAM-----E TEIQLPFITADasGPKHlvmkLTRAKFEALVEPLLKRLMPPVEQAIKDAG LEPKDIEE------IVLVGGSTRIPKVQEMVKGFF-----------GKEP NKS------VNPDEAVA--------------------------------- -- >gi|295365|gb|AAA30206.1|_1:208 (L14478) heat shock protein 70 [Trypanosoma brucei] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagsiAGLEVLRIVNEPTAAAI AYGRDRsseGAMKTVLIFDLGGGTFDVTLlnIDGGLFEvraTAGDTHLGG EDFDSRLVDYFATEFRtrtgkdlrgnaramrrlrtACERVKRTLSSSAST ---NIAIDALYEGFDFFSKITRARFEEMCRDQFERCLEPVRKVLKDAEVD ASAVDD------VVLVGGSTRIPRVQQLVQNFF----------NGKELNR S------------------------------------------------- >gi|1854597|gb|AAB48219.1|_1:216 (U49131) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagqiAGLEVERIINEPTAAAL AYGLEKKKNEKIVVFDLGGGTFDVSVleVTEELVEvlsTNGDTHLGGDDF DEELINFIAGKFKaehgidlrkdpmalqrlreAAEKGKKELSSSQ----- QTDINPPFITADasgakhLQMSITRAEFERLCDPLFERCREPVTKALKDA KLDPKEIDE------VVLVGGSTRIPKVQELVREMF-----------GKE PHKG------VNPDEAVA-------------------------------- --- >gi|1854613|gb|AAB48227.1|_1:216 (U49139) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGSDKKKDETIAVYDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDNI DQKVMDWIVDEFIkdqgidlskdkmalqrlkeAAEKAKMELSSVM----- ETEINLPFIIADasGPKHltmkLTRARFEQLVEDLLQKSVGPCKQALSDA GVKPEQIDE------VVLVGGSTRIPRVQQIVRDLF-----------KKE PHKG------VNPDEAVA-------------------------------- --- >gi|1084481|pir||S48023_1:172 dnaK-type molecular chaperone hsp70.1 - maize (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------GGEDFDNRMVNHFV QEFKrknkkditgnpralrrlrtACERAKRTLSSTAQT---TIEIDSLYE GIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHD------ VVLVGGSTRIPRVQQLLQDFF----------NGKELCKN------INPDE AVAYGAAVQAAILSGE-----GNEKVQDLLLLDVTPLSlgletaggvmtv liprnttiptkkeqvfstysdnqpgv >gi|1808585|emb|CAA67132.1|_5:160 (X98508) heat shock protein 70 [Agaricus bisporus] slln---------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------INGGVFAvkaTAGDTHLGGEDFDN ALLEHFKNEFKkktkfdisddaralrrlrsACERAKRTLSSVTQT---MV EVDSLYQGEDFSASITRARFEEINAVLFKSTLEPVEKVLKDAKMAHEKVD D------IVLVGGSTRIPKVQALVSEYF----------GGRQLNKS---- --INPDE-------------------------------------- >gi|1196309|gb|AAB51401.1|_1:96 (L76303) putative [Borrelia burgdorferi] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------RPPQEKSRKELSVIINS RLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPGISNLIEE VFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY---------- -------------------kheqqkfnklkkvsskvkrknkissklkgwf lkewf >gi|6715488|gb|AAF26433.1|AF218835_4_1:109 (AF218835) putative FtsA ortholog [Clostridium perfringens] M-----SKNIVGLDIGNRNICASISGEnENGEFEVLDFIVKDLQGVSKGK IIDEESVVKTIKECLKELEEKSGHNIR-GVYLSLKNNDCRMVENKGYSYT DNDDSLVFKENVEEA----------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------- >gi|1518098|gb|AAC24602.1|_3:83 (U65939) ATP binding protein [Azotobacter vinelandii] sy------------------------------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------PPACLLTGGSAKMEGAVELA EEIFHMPVRLGVPH-----SVRGMDDVIGNPIYSTGVGLLLYGLQKQTEA RRIR----HQQLWRRNQDTC-pgttqrwfqgnf >gi|420209|pir||S12830_2:53 heat shock protein 70 - mouse (fragments) d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDVL --------------------iqvyegeramtkdwldknqta >gi|55072|emb|CAA38267.1|_2:51 (X54401) heat shock protein 70 cognate [Mus musculus] d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGD-- -------------------- --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 00:50:50 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id AAA07141 for Message-Id: <200005192254.PAA11769@alpha.cse.ucsc.edu> Subject: T0089(target 99 alignment) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 alignment in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99align.a2m' Content-Disposition: attachment; filename="t99-results.t99align.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESV NTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALE KLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDT VKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKH VIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC YANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETPVKSENPLKKIFRLFKELME >gi|2707899|gb|AAB92376.1|_1:408 (AF038380) FtsA [Pseudomonas putida] MANAHSGKMIVGLDIGTSKVVALVGEVgEDGTLEIVGIGTHPSRGLKKGV VVNIESTVQSIQRAVEEAQLMAGCRIH-SAFVGVAGNHIRSLNSHGIVAI RDR--EVSLADLERVLDAAQAVAIPADQRVLHTLPQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNAAQNIEKCVRRCGLEIDDIILEQLASAYSVL TDDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYTCALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLIQAELRRSGYE------DLVPAGIVLTGGTAKMEGAVELA EEIFHMPVRLGVPH-----SVRGLSDVVRNPIYSTGVGLLTYGLLKQSED LalTGNSNSSSNSYGDEPKAPV-lerfkkwvqgnf >gi|6715614|gb|AAA95992.2|_1:413 (U19797) FtsA [Pseudomonas aeruginosa] MASVQSGKMIVGLDIGTSKVVALVGEVtADGQLEVVGIGTHPSRGLKKGV VVNIESTVQSIQRAIDEAQQMAGCRIH-SAFVGIAGNHIRSLNSHGIVAI RDR--EVNPADIERVLDAAQAVAIPADQRVLHTLAQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNASQNIEKCVRRCGLEVDDIILEQLASAYSVL TEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYACALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEGAVELA EEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQKQSDG MsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|120568|sp|P06137|FTSA_ECOLI_1:386 CELL DIVISION PROTEIN FTSAgi|72941|pir||CEECA cell division protein ftsA - Escherichia coligi|40862|emb|CAA38871.1| (X55034) FtsA protein [Escherichia coli]gi|41494|emb|CAA26590.1| (X02821) ftsA protein [Escherichia coli]gi|216508|dbj|BAA01359.1| (D10483) cell division protein ftsA [Escherichia coli]gi|1786282|gb|AAC73205.1| (AE000118) ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGAAQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|146025|gb|AAA23811.1|_1:386 (M36531) cell division protein [Escherichia coli]gi|146032|gb|AAA23817.1| (K02668) ftsA protein [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGARQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|7380686|emb|CAB85276.1|_3:396 (AL162758) cell division protein [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQLENGAVQER----------eggggllarlkrwiensf >gi|7225649|gb|AAF40864.1|_3:396 (AE002398) cell division protein FtsA [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQPENGAVQER----------eggggllarlkrwiensf >gi|3023796|sp|Q44774|FTSA_BORBU_5:377 CELL DIVISION PROTEIN FTSAgi|7443770|pir||D70137 cell division protein (ftsA) homolog - Lyme disease spirochetegi|1165284|gb|AAA85623.1| (U43739) FtsA [Borrelia burgdorferi]gi|2688166|gb|AAC66648.1| (AE001137) cell division protein (ftsA) [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGEVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|1200208|emb|CAA78155.1|_5:377 (Z12164) ftsA [Borrelia burgdorferi]gi|1234875|emb|CAA65463.1| (X96685) ftsA [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGGVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|121570|sp|P07823|GR78_MESAU_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|90188|pir||A27414 dnaK-type molecular chaperone GRP78 precursor - Chinese hamstergi|304510|gb|AAA51448.1| (M17169) glucose-regulated protein [Cricetulus griseus] mkfpmvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|109893|pir||A37048_24:414 dnaK-type molecular chaperone grp78 precursor - mouse mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|2506545|sp|P20029|GR78_MOUSE_24:414 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|121574|sp|P06761|GR78_RAT_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) (STEROIDOGENESIS-ACTIVATOR POLYPEPTIDE)gi|279683|pir||HHRTGB dnaK-type molecular chaperone precursor - ratgi|203151|gb|AAA40817.1| (M14050) preimmunoglobulin heavy chain binding protein [Rattus norvegicus] mkftvvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|2598562|emb|CAA05361.1|_24:414 (AJ002387) BiP [Mus musculus] mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|6470150|gb|AAF13605.1|AF188611_1_5:395 (AF188611) BiP protein [Homo sapiens] meed--KKEDVGTVVGIDLGTTYSCVGVF--KNGRVEIIandqGNRITPS YVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRLIGRTWNdPSVQQDIKF LPFKVVEkktkPYIQVDIgGGQTKTFAPEEISAMVLTKMKETAEAYL--- ------------------------GKKVTHAVVTVPAYFNDAQRQATKDa gtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNILVFDLGGGTFDVSLltI DNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYKkktgkdvrkdnravqk lrrEVEKAKRALSSQHQA---RIEIESFYEGEDFSETLTRAKFEELNMDL FRSTMKPVQKVLEDSDLKKSDIDE------IVLVGGSTRIPKIQQLVKEF F----------NGKEPSRG------INPDEAVAYGAAVQAGVLSGDQDTG D-----------------lvlldvcpltlgietvggvmtkliprntvvpt kksqifstasdnqptvti >gi|6900104|emb|CAB71335.1|_23:413 (AJ271729) glucose-regulated protein [Homo sapiens]gi|7229462|gb|AAF42836.1|AF216292_1 (AF216292) endoplasmic reticulum lumenal Ca2+ binding protein grp78; BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|4033392|sp|Q90593|GR78_CHICK_21:411 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|2134273|pir||I50242 dnaK-type molecular chaperone - chickengi|211827|gb|AAA48785.1| (M27260) 78-kD glucose-regulated protein precursor [Gallus gallus] mrhlllallllggaraddee--KKEDVGTVVGIDLGTTYSCVGVF--KNG RVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRL IGRTWNdPSVQQDIKYLPFKVVEkkakPHIQVDVgGGQTKTFAPEEISAM VLTKMKETAEAYL---------------------------GKKVTHAVVT VPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNIL VFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYK kktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGEDF SETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IVLV GGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAVAY GAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgietv ggvmtkliprntvvptkksqifstasdnqptvti >gi|3122097|sp|O30991|FTSA_AGRTU_20:443 CELL DIVISION PROTEIN FTSAgi|2465464|gb|AAC45820.1| (AF024659) cell division protein [Agrobacterium tumefaciens] msffgsshfglprlkplss----KRSHIVSVLDIGSTKVVCMIgrltprq eseiLPGRTHKVEIIGIGHQRSRGVKSGVIADLDALEGVIRLSVDAAERM AGLTVD-SLIVNVSAGRLASDIYTASIDLGGQ--EVEASDLRKVLVAASQ QSMRQDRAILHSLPTGYSLDGERGIRDPLSMYGDLLGVDMHVVTVERTAL KNLELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTI SVFAEGRLIHTDAIGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALLNG AdERDMISIPPIGEDdrdQPSQVSRALVTRIVRARIEETLELIRDRIQKS GFS------PIVGKRVVLTGGASQLTGLPETARRILARNVRIGRPM---- -GVAGLPVAAKGPAFSTACGLMIYPQVADIEIHaaqggmfspFGNGSGRI ARVGQWLKESF- >gi|120567|sp|P28264|FTSA_BACSU_1:373 CELL DIVISION PROTEIN FTSAgi|2126939|pir||I39847 cell-division protein (septum formation) ftsA - Bacillus subtilisgi|142940|gb|AAA22456.1| (M22630) ftsA [Bacillus subtilis]gi|2633899|emb|CAB13401.1| (Z99111) cell-division protein [Bacillus subtilis] M---NNNELYVSLDLGTSNTKVIVGEMTGDSLNIIGVGNVPSEGLKKGSI VDIDETVHSIRKAFDQAERMVGFPLR-KAIVGVNGNYINIQDTNGVVAVS SENKEIQVEDVRRVMAAAQVVSVPHEQLIVDVIPKQFIVDGRDEITDPKK MLGVRLEVEGTLITGSKTILHNLLRCVERAGIEITDICLQPLAAGSAALS KDEKNLGVALIDIGGGSTTIAVFQNGHLTSTRVIPLGGENITKDISIGLR TSTEEAERVKKQLGHAYYDEAsEDEIFEVTVIGTNQKQTFTQQEAANIIE ARVEEILEIVSEELRSMGI-------TDLPGGFVLTGGQAAMPGVMSLAQ DVLQNNVRV------QGPNYIGV----RDPQYMTGVGLIQFACR------ --------------------nariqgrkigfkmpeeaiqeiavssseeqe qhhhqnevqqrpkgkqktqa >gi|1230567|gb|AAC05418.1|_5:400 (U46464) heat shock protein 70 [Ajellomyces capsulatus] mapa----------VGIDLGTTYSCVGIF--RDDRIEIIandqGNRTTPS FVAFtdtERLIGDAAKNQVAMNpaNTVFDAKRLIGRKFAdPEVQADMKHF PFKITDkggkPVIQVEFKGETKEFTPEEISSMVLTKMRETAEAYL----- ----------------------GGTVNNAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDKkaDGERNVLIFDLGGGTFDVSLltIE EGIFEvksTAGDTHLGGEDFDNRLVNHFVSEFKrkfkkispaeraralrr sptACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDL FRSTMEPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDF F----------NGKEPNKS------INPDEAVAYGAAVQAAILSGDT--- -SSKSTNEILLLDVAPLSlgietaggvmtplikrnttiptkksetfstfs dnqpgvliqvfegerart >gi|4033383|sp|O51928|FTSA_BUCAP_1:416 CELL DIVISION PROTEIN FTSAgi|2738588|gb|AAC46068.1| (AF012886) cell division protein [Buchnera aphidicola] MIISKNRKLVVGLEIGTTKVVTLVGEVlTNGKIKIIGIGICQSNGIDKGR INDLDAVISCIRESIHQAEIMANCQIT-SVYLSLSSKYINCPNEIGIVPI SED--EVTKEDIENVIHTAKSVKILNEHHILHVIPQEYSIDQQSGIKNPI GLSGTRMQVRVHLITCHQNMAKNIIKAVEKCDIKVDQVIFSGLASSKAVL TEDECKLGVCMIDIGGGTIDLITYIDGSIQDSQVIPYAGNIVTKDISYAF STSYSDSEKIKIKYGSAIKLSPgTSKNIDLSSKYGNFQKNLQQDTVIEVI DSRYNELLHLINNRILYVQKKLYKEGrKYQLTGGIVLTGGASTISFLTEC AEKIFQKKIRIAKPL-----NISGLTDNVTEPHYSTVVGLLHYGKEFYFD DTNQKREisfieKWFQKISNWFKK---ef >gi|1169751|sp|P45068|FTSA_HAEIN_1:419 CELL DIVISION PROTEIN FTSAgi|1073923|pir||H64185 cell division protein ftsA - Haemophilus influenzae (strain Rd KW20)gi|1574698|gb|AAC22797.1| (U32794) cell division protein (ftsA) [Haemophilus influenzae Rd] MVKGVETKTIVGLEVGTSKVVVVVGEVfPDGVVNVLGVGSCPSKGIDRGS ITDLDAVVGSIQRAIEAAESMADCQIM-SVTLAITGEHIQSLNESGFVPI AES--EVTQEEIDSALHTASSIKLPEGLSLLHVIPQEYAVDRQMNIKNPL GLQGVRLKAQVHLIACHQDWQNNLKKAVERCGLQVDKVVFSGFAATHSVL TEDEKDLGVCLIDFGAGTMNVMVYTNGALRFSKVIPYAGNIVTNDIAHAC TISRAEAERIKVNYASAFYPARlhGDKKIEVASIGGRAPRSLTKSDLSLI TSARYTELLGVVKDELDKLKAELEAKHiKFELIAGVVITGGGAQIEDLKE CASNVFHCQVRIASPL-----NITGLTDYVNRPQYSTVVGLLQYNYSNSD DDLISGSDdsegTFFESIWQGVKKIVNkvrsef >gi|3122114|sp|O30994|FTSA_RHIME_17:442 CELL DIVISION PROTEIN FTSAgi|2465468|gb|AAC45823.1| (AF024660) cell division protein [Sinorhizobium meliloti] mslfgsanfglprlkp-LPSKRSHVVSVLDIGSTKVVCMIgrltpraesq iLPGRTHSIEVIGIGHQKSRGVKNGVIADLDAVESVVRLAVDAAERMAGL TID-SLIVNVSAGRLQSDVYTATIDLGGQ--EVEANDLKKVLAAAGHQSL RTDRAILHSLPTGFSLDGERGIRDPLAMFGDVLGVDMHVLTAERPALKNL ELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTISVF AEGKLVHADAVGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALPNSAdE RDIISVPPIGEDdrdQPTHVPRALVSRIVRARIEETLELIRDRIQRSGFS ------PIVGKRIVLTGGASQLTGLPEAARRILARNVRIGRPL-----GV SGLPAAAKGPAFSTAVGLMIYPQVADLETHaagsgmfsTLGGNSRFARMG QWLKESF- >gi|3122103|sp|O07672|FTSA_ENTHR_1:382 CELL DIVISION PROTEIN FTSAgi|2222676|emb|CAA74237.1| (Y13922) ftsA [Enterococcus hirae] M---AKTGMYVGLDIGTTSVKVVVAEYIDSQMNIIGVGNAKSEGINRGII VDIDKTVQAIQRAVRQAEEKAGIQIK-GVSVGLPANLLEVENCQGMIAVN GDSKEITDEDVRNVASAALVRSIPPERQIVSILPQDFTVDGFEGIKDPRG MIGVRLEMYGLLFTGPKTIVHNIRKCVENAGLVVNELVITPLALTETILS DGEKDFGTIVIDMGGGQTTTAVMHDKQLKFTSLDQEGGEFVTKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGQSEPVKVDERYLSEVIS ARMEQIFNKAKEALDQIEA-------LELPGGIVLTGGAASLPGVVDLAQ EIFGVNVKL------YVPNQMGL----RNPVFTNVISIVDY--------- ---SAN-LSEVYQLAK----iavtgetvvahhttveqevtsydndsydap eetvydepeqkksdedvttk >gi|7494626|pir||T34037_27:424 heat shock 70K protein D - Caenorhabditis elegansgi|1947139|gb|AAC71123.1| (AF000264) C. elegans HSP-4, heat shock 70 KD protein D (SW:P20163) [Caenorhabditis elegans] mkvfsliliafvanaycdegasteke----EKMGTIIGIDLGTTYSCVGV F--KNGRVEIIandqGNRITPSYVAFsgdqgERLIGDAAKNQLTINpeNT IFDAKRLIGRFYNeKTVQQDIKHWPFKIVDksnkPNVEVKVGSETKQFTP EEVSAMVLTKMKQIAESYL---------------------------GHEV KNAVVTVPAYFNDAQKQATKDagsiAGLNVVRIINEPTAAAIAYGLDKkD GERNILVFDLGGGTFDVSLltIDSGVFEvlaTNGDTHLGGEDFDQRVMEY FIKLYKkksgkdlrkdnravqklrrEVEKAKRALSTQHQT---KIEIESL FDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDADMKKTDVHE---- --IVLVGGSTRIPKVQQLIKDYF----------NGKEPSRG------INP DEAVAYGAAVQAGVIGGVEN-------TGDVVLLDVNPL-tlgietvggv mtkligrntviptkksqvfstaadsqsavsiviyegerpm >gi|121567|sp|P11021|GR78_HUMAN_23:412 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|87528|pir||A29821 dnaK-type molecular chaperone HSPA5 precursor - humangi|386758|gb|AAA52614.1| (M19645) GRP78 precursor [Homo sapiens]gi|1143492|emb|CAA61201.1| (X87949) BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAK-ALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvllhvcpltlgie tvggvmtklipsntvvptknsqifstasdnqptvti >gi|7471223|pir||D75494_1:382 cell division protein FtsA - Deinococcus radiodurans (strain R1)gi|6458332|gb|AAF10210.1|AE001921_2 (AE001921) cell division protein FtsA [Deinococcus radiodurans] M---RENSIIVGLDIGTTKITTVIGEVaPDGTIDIIGEGSVPSEGMKRGS VINLERATQAIKQSLHAAERVSGVRAW-NVFVSVGGNHTKAMTSHGLAAI RRQQ-EISPPDVERAIENARAVPLDPSLEILHTIPQEYVVDGQEGIKNPV GMHGVRLEVDVHIVAGSAGPLLNLRRCVQEAGLQIEGFVLHSLASGLATL DHSEQNQTTVVVDMGGGTTDIGVFKRGNLAHSASIPIGGDHVTADLAQIL KIPMEEAEKVKRHYGAAIPELAdQELTLEITTA-SGATHAISAYELSRVI RPRVSEIYGLIRDEIDQA-LGPVELVA----QSVVLTGGGAQLPGAVDLA RERFRLPTRLGRPR-----GIHGLSDIVGDPAHACSVGMVLYGITQDG-- ---------------------rvpsglddggdpagyteyagrhdqgypqg gypapgyltaptggthvapqg >gi|3426021|dbj|BAA32395.1|_28:424 (AB016836) heat shock 70 kD protein cognate [Bombyx mori] mvkmrwslfalvlvvpavcaddkkekd----KDIGTVIGIDLGTTYSCVG VY--KNGRVEIIandqGNRITPSYVAFtqdgERLIGDAAKNQLTTNpeNT VFDAKRLIGREWSdQTVQHDVKFFPFKVVEknskPHVQVQTSQGDKVFAP EEISAMVLTKMKETAEAYL---------------------------GKKV THAVVTVPAYFNDAQRQATKDagtiSGLNVMRIINEPTAAAIAYGLDKkE GEKNVLVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEH FIKLYKkkkgkdirkdnravqklrrEVEKAKRALSSSHQV---KIEIESF FEGDDSSETLTRAKFEELNMDLFRSTLKPVQKVLEDADMNKKDVDE---- --IVLVGGSTRIPKVQQLVKEFF----------NGKEPSRG------INP DEAVAYGAAVQAGVLSGEQD-------TDAIVLLDVNPL-tmgietvggv mtkliprntviptkksqifstasdnqhtvtiqvyegerpm >gi|2039364|gb|AAB53051.1|_5:398 (U91560) heat shock protein 70 [Paracoccidioides brasiliensis] mapa----------IGIDLGTTYSCVGIF--RDDRIEIIaneqGNRNTPS FVAFtdtERLIGDAAKNQVAMNpQTVFEAKRLIGRKFAdPEVQADMKHFP FKITDkggnPKIQVEFRGEGKHFTPEGISSMFRRKKREIAESYL------ ---------------------GGTVNNAVVTVPAYFNDSQRQVTKDagli AGLNVLRIINEPTAAAIAYGLDKkaEGERNVLILDLGGGTFDVSLltIEE GIFEvksTAGDTHFGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlr tACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFR STMDPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF- ---------NGKEPNKS------INPDEAVAYGAAVQAAILSGDS----T SKSTNEILLLDVAPLSvgietaggvmtplikrnttiptkksetfstfadn qpgvliqvfegerart >gi|4009469|gb|AAC95439.1|_1:373 (AF068901) cell division protein FtsA [Streptococcus pneumoniae] M---AREGFFTGLDIGTSSVKVLVAEQRNGELNVIGVSNAKSKGVKDGII VDIDAAATAIKSAISQAEEKAGISIK-SVNVGLPGNLLQVEPTQGMIPVT SDTKEITDQDVENVVKSALTKSMTPDREVITFIPEEFIVDGFQGIRDPRG MMGVRLEMRGLLYTGPRTILHNLRKTVERAGVQVENVIISPLAMVQSVLN EGEREFGATVIDMGAGQTTVATIRNQELQFTHILQEGGDYVTKDISKVLK TSRKLAEGLKLNYGEAYPPLASKETFQVEVIGEVEAVEVTEAYLSEIISA RIKHILEQIKQELDRRRL-------LDLPGGIVLIGGNAILPGMVELAQE VFGVRVKL------YVPNQVGI----RNPAFAHVISLSEFAGQL------ -------------------tevnllaqgaikgendlshqpisfggmlqkt aqfvqstpvqpapapevep >gi|4433657|gb|AAD20834.1|_10:432 (AF125320) cell division protein FtsA homolog [Bartonella bacilliformis] mflslphgg---WRKTRFLTVLDVGSSKIVCLIaclhpleharhLYGRTH SIEILGFGMQRSCGIKSGVIMDMVAAERSIRLAVDAAEKMAGLVVD-SVI VNFSSSCLKSSFINGTVCLDGH--EVTPYDVRMALADVSRKAFDAEHHIV HTVPAFYALDGNKGIVDPIGMIGKTLGVNVHVVTAETAPLRNLETCINRA HLSVEAMVATPFASGLSVLINDEARLGAACIDLGGGTTTLSVFSEGKFVH TDVLPVGGHHVTLDVARGFSMSIEEAERLKIVYGSTFSMSAdDRCMINVL EIGNGHHETeYPRAVLGRIIRARVEEILEMMRDRLNRSGFG------HII GKRVILTGGASQLTGLPEMARNILGRNVRIGRPL-----GISRLPSFAKG ATFSSAVGLLIYPQLVGFEKKTVQTAvkylstgrgKYFQRVGQWLRKTF- >gi|1708306|sp|Q10265|HS71_SCHPO_5:398 PROBABLE HEAT SHOCK PROTEIN C13G7.02Cgi|2130224|pir||S67431 dnaK-type molecular chaperone SPAC13G7.02c - fission yeast (Schizosaccharomyces pombe)gi|7490622|pir||T37652 heat shock protein 70 - fission yeast (Schizosaccharomyces pombe)gi|1204169|emb|CAA93590.1| (Z69729) heat shock protein 70 [Schizosaccharomyces pombe] msks----------IGIDLGTTYSCVGHF--SNNRVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVAMNphNTIFDAKRLIGRRFNdPEVQSDMKHW PFKVIEkdgkPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFL----- ----------------------GGKVTDAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDRsnQHETNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDSRLVNHFAQEFKrknkkditgnaravrrl rtACERAKRTLSSSAQA---SIEIDSLYEGIDFYTSITRARFEELCADLF RNTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPRIQKLVSDFF ----------NGKEPCKS------INPDEAVAYGAAVQAAILVGDT---- -SEKTQDLLLLDVAPLSlgietaggvmtplikrnttiptkksevfstyad nqpgvliqvfegerart >gi|3323502|gb|AAC26629.1|_7:402 (AF045559) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850197|gb|AAC72001.1|_7:402 (U85648) heat shock protein 70 [Toxoplasma gondii]gi|4099058|gb|AAD09230.1| (U82281) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850199|gb|AAC72002.1|_7:402 (U85649) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|7462793|pir||G72328_1:419 hypothetical protein TM0835 - Thermotoga maritima (strain MSB8)gi|4981367|gb|AAD35917.1|AE001750_11 (AE001750) cell division protein FtsA, putative [Thermotoga maritima] MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >gi|3004463|emb|CAA04673.1|_8:401 (AJ001312) heat shock protein 70 [Tilapia mossambica] mqlkgva----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRT TPSYVAFtdtERLIGDAAKNQVALNpsNTVFDAKRLIGRKFDePVVQADM KHWPFKVISdggkPKIRVEYKGEDKAFYPEEISSMVLVKMKEIAEAYL-- -------------------------GQKVSNAVITVPAYFNDSQRQATKD agviAGLNVLRIINEPTAAAIAYGLDKgkSGERNVLIFDLGGGTFDVSIl tIEDGIFEvksTAGDTHLGGEDFDNRMVNHFVEEFKrkhkkdisqnkral rrlrtAFERAKRTLSSSSQA---SIEIDSLFEGVDFYTSITRARFEELCS DLFRGTLEPVEKSLRDAKLDKGQIHD------VVLVGGSTRIPKIQKLLQ DFF----------NGRELNKS------INPDEAVAYGAAVQAAILSGDT- ----SGNVQDLLLLDVAPLSlgietaggvmtalikrnttiptkqtqtftt ysdnqpgvliqvyegeramt >gi|1929868|gb|AAB58248.1|_33:428 (L46790) endoplasmic reticulum HSP70 homolog; grp78 [Pneumocystis carinii f. sp. carinii] mnkiqkkvvkhyfwivllllfalprsgrsqke----ESYGAVIGIDLGTT YSCVGVM--QSGRVEILpndqGNRITPSYVAFtneERLVGDAAKNQAPAN plNTIFDVKRLIGRRFDeADVQSDIKNFPFKVNHhegkPHVEVNIAGEKK TFTPEEISAMVLRKMKEIAESYL--------------------------- GRTVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGL DKkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQ VMAHFKTLFHqkhgvrldsdpkalgklkrEVEKAKRTLSSQMSA---RVE IESLYQGIDFSETLTRAKFEEINMHLFKKTMKPVEQVLKDGNVKKSDIDD ------IVLVGGSTRIPKVQQLLEEFF----------DGKKVSKS----- -INPDEAVAYGATVQGGILSHEEG-------VEDIVLVDVNPL-tlgiet tggvmtkliarntviptrksqifstatdnqavvliqvfegerpl >gi|1945628|emb|CAA72797.1|_5:396 (Y12079) heat shock protein 70 [Cryptococcus curvatus] mska----------IGIDLGTTYSCVAVW--QQDRVEIIandqGNRTTPS YVAFtdsERLIGDAAKNQVAMNpyNTVFDAKRLIGRKFEdAEVQSDMKHW PFKVISrlaSLHQVEYaRGE--EFSPEEISSMVLIKMKETAEAYL----- ----------------------GGTVSKAVVTVPAYFNDSQRQATKDagt iAGLEVLRIINEPTAAAIAYGLDKksEGEKNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDNRLVNHFVQEFKrknkkditsnaralrrl rtACERAKRTLSSAAQT---SIEIDSLYDGIDFYTSITRARFEELCQDLF RSTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPKIQKLVSDMF ----------SGREPNRS------INPDEAVAYGAAVQASILNGET---- -SEATQDLLLLDVAPLSlgietaggimtplikrnttvptkkseifstyad nqpgvliqvyegerakt >gi|2529289|gb|AAB95297.1|_10:404 (L44127) heat shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggsmtplikrsttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|2827905|gb|AAB99911.1|_10:404 (AF025477) heat-shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggvmtplvkrgttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|6322426|ref|NP_012500.1|KAR2_45:442 Homologue of mammalian BiP (GPR78) protein; member of the HSP70 gene family; Kar2pgi|121575|sp|P16474|GR78_YEAST 78 KD GLUCOSE-REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN HOMOLOG) (BIP)gi|72216|pir||HHBYK2 dnaK-type molecular chaperone KAR2 precursor - yeast (Saccharomyces cerevisiae)gi|171130|gb|AAA34454.1| (M31006) glucose regulated protein 78 precursor [Saccharomyces cerevisiae]gi|171771|gb|AAA34713.1| (M25394) protein-folding protein (KAR2) precursor [Saccharomyces cerevisiae]gi|171773|gb|AAA34714.1| (M25064) KAR2 protein precursor [Saccharomyces cerevisiae]gi|1008157|emb|CAA89325.1| (Z49309) ORF YJL034w [Saccharomyces cerevisiae] mffnrlsagkllvplsvvlyalfvvilplqnsfhssnvlvrgad--DVEN YGTVIGIDLGTTYSCVAVM--KNGKTEILaneqGNRITPSYVAFtddERL IGDAAKNQVAANpqNTIFDIKRLIGLKYNdRSVQKDIKHLPFNVVNkdgk PAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYL--------------- ------------GTKVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIV NEPTAAAIAYGLDKsDKEHQIIVYDLGGGTFDVSLlsIENGVFEvqaTSG DTHLGGEDFDYKIVRQLIKAFKkkhgidvsdnnkalaklkrEAEKAKRAL SSQMST---RIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVL QDSGLEKKDVDD------IVLVGGSTRIPKVQQLLESYF----------D GKKASKG------INPDEAVAYGAAVQAGVLSGEEG-------VEDIVLL DVNAL-tlgiettggvmtplikrntaiptkksqifstavdnqptvmikvy egeram >gi|4138103|emb|CAA75615.1|_1:370 (Y15422) cell division protein FtsA [Lactococcus lactis subsp. cremoris] M---AKSGLYTGVDIGTNTIKVLVAEYVSGEMNIIGVGNAKSDGLKNGII VDIEKVAQALRKAVNAAEERAGITID-RINVSIPANSLEMEPCQGMVPIV SDTKEITDNDVIQVVQNALMRGIVPEREIIAVETKEFTVDGFTGISDPRG MFGVRLEIRGVVYTGPKTLVHNVRKVVERAGLLVDNIVIAPLAMRQYVLT EGEREFGTIMVDLGAGQTTVSIVKDQSLKFTHTSPEGGDYVTKDISTVLN TSVSAAEDLKVNYGEASTERAsQDEYFLVDVVGKDEPEQITEYYLSQIIE ARMTQVFNRVRQDLEHGHT-------SETPGGLILVGGTAAMPGVVDLAT KILGMNARL------YVPGEMGL----RNPAFAQVISVVNY--------- --------------------igsrsdidvlvsqafsgdyaytaaeetyva pvqtiapqvttvadvendfy >gi|5834365|gb|AAD53931.1|AF179611_15_1:418 (AF179611) cell division protein FtsA [Zymomonas mobilis] MTPVKEGNLITALDIGSSKISALIVEKrADNVLQVLGSGQRESLGVRRGY LFDMESTEKAVREAVEQAERIAGTNIE-SVWVSFSAGGLISDLSSTEVAL NGQ--RIEEIHMETLLATGRDAIDPDGHMVLHAQPALYTLDGLKGVKSPI GLYADRLGVDIHVIAAEPSPVRYLELAVRSAHLEVQAIVAAPIAAGMSCL FAEERELGVALVELGAGVTNVSLFAGGLLVGLTSIPMGASDITDDIAAAF GTRRSDAERLKCFYGSAQSSPRdNHEMIDVAPIANDedviDPQRISRAQL IGVIRKRLDHWMDHIADALKSLGYN------GPVGRQVVLTGGGAELKGI ADYAQGVLGRSVRIGRPH-----GLVGLPDAHSGPAFATLTGLVLHAASE PFDLRPLSYNnrigsqksfmGSFKRLFQMFRR---ey >gi|7443772|pir||G71331_1:414 probable cell division protein (ftsA) - syphilis spirochetegi|3322667|gb|AAC65373.1| (AE001217) cell division protein (ftsA) [Treponema pallidum] M-----GEVIVGLDIGTESIRAVVAERlEGGALQVVGVGVGHSKGLRRGV VVNIENTVVGIHHAVEAAEMMSGIEVA-HCVVGLGGTHIEGRNLKGVVAV adkGKGHREVDQSDIDRVLEVACAVSLPPDRKILHVIPKVYSVDDQHGIT DPRNIIGVRLEGEVHMITGSATCMRSVIDCVKRANLHIDFLMHNGLAAVR SVLNDDERNVGCVLINIGGGTTDVIAMYKGSPVLITSIPVGGSQVTSDLA KVKNLPLETAERIKIKDGCCWIPLLeGEGSVLISSQGNRIPVEISKREIA EIIEARMCEVFTIVRDRLSTVETQ----SGRGIIENIILCGGGAQLTGAV ELASAIFDTPrVHLGIPG-----TLGGLAGEYRSPEFAVVLGLILEYTHK QGQRAyqgraEMERAGVFTKVKDIWRNLF- >gi|7465360|pir||C71873_1:442 septum formation protein - Helicobacter pylori (strain J99)gi|4155486|gb|AAD06487.1| (AE001520) septum formation protein [Helicobacter pylori J99] M---EHKEIVIGVDIGSRKICAIVAEFKDGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpissfresyhpKTK AIVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINNACaKAGLDNDK HILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIM IQSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNS IRYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFESGaetPSQ SVQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGFE--- ---EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLATPV--EKYNIMG MFEDLKDPRFSVVVGLILYkaGGHTNYERDskgiirYHESDDYIRKAHQS NPTPH-ihsspternlsdlktpsaplntaknddflpikpteqkgffqnll dkiski >gi|1708633|gb|AAB38076.1|_32:427 (U40994) PrBiP precursor [Pneumocystis carinii f. sp. ratti] miiiriflyklffwlnflifvlprygwaqke----ESYGTVIGIDLGTTY SCVGVM--QSGRVEILandqGNRITPSYVAFtndERLVGDAAKNQAPANp lNTIFDVKRLIGRRFDdVDVQADMKHWPFKVHHqdgkPHVIVNIAGEKKT FTPEEISAMVLRKMKEIAESYL---------------------------G RTVTHAVVAVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGLD KkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQV MSYFKTIFHqkngvrldddpkalgklkrEVEKAKRILSSQMSA---RVDI ESLYQGIDFSETLTRPKFEEINMHLSKKTMKPVEQVLKDGNVKKSDIDD- -----IVLVGGSTRIPKVQQLLEDYF----------DGKKVSKS------ INPAEAVAYGATVQAGILSLEEG-------VEDIVLVDVNPL-tlgiett ggvmtkliarntviptrksqifspasdnqavvliqvfegerpl >gi|7443771|pir||D70347_6:413 cell division protein FtsA - Aquifex aeolicusgi|2983169|gb|AAC06770.1| (AE000694) cell division protein FtsA [Aquifex aeolicus] mkrla-----------ALDIGSQKTVFVIGERdSYGDIHIIGFGEVPSRG IVKGVINDLSEAKGSILRAMKEAEAMAGLKVR-EVVYNVSGGTTKngtvk SQNVKDTISISTKSSEIEESHIQRLHERCLMKAKEEGYEIVYTAPRKYIL DDHTEVKNPLGLVGSKLSVEMHVVKVSTTILRNLEKAIREVGLNPVGRTV NAIASADSVLTHDEKEDGVLLLDMGAGLTDYSLYTEGRPYITGVVPFGGI NITKDLSYMLKIDTETAESVKVNHGVAFESLVdDEDVVKIKPRGEDREIP IQKKQVAEIIQSRVEEIVEKVFKEIKARGV-PL----NQINSGIVVTGGT ANLKGIRELIEHMTGLPVRIGLPQ-----GIVGLREKIENPKYATVCGLL RQAFVSGTIDItestNSNTGNFFKNLSERFKKWFEell >gi|3122110|sp|O25629|FTSA_HELPY_1:441 CELL DIVISION PROTEIN FTSAgi|7463911|pir||B64642 cell division protein - Helicobacter pylori (strain 26695)gi|2314120|gb|AAD08024.1| (AE000606) cell division protein (ftsA) protein [Helicobacter pylori 26695] M---EHKEIVIGVDLGSRKICAIVAEFKEGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpmphfgeyhpKTKA IVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINSACaKAGLDNDKH ILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIMI QSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNSI RYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFEGGeetPSQN VQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGLE---- --EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLAAPV--EKYNIMGM FEDLKDPRFSVVVGLILYkaGGHTNYERDskgvirYHESDDYTRTAHQSS PTPH-ihsspternlsdlkapsaplntaknddflpikpteqkgffksfld kiskf >gi|7495875|pir||T19211_7:401 hypothetical protein C12C8.1 - Caenorhabditis elegansgi|3874268|emb|CAB03871.1| (Z81467) predicted using Genefinder; Similarity to heat shock protein 70's; cDNA EST EMBL:D64554 comes from this gene; cDNA EST EMBL:D67599 comes from this gene; cDNA EST EMBL:C13707 comes from this gene; cDNA EST yk395h8.3 comes from this gene; cDNA E> mstcka----------IGIDLGTTYSCVGIY--QNGKVEILanseGNKTT PSYVAFtdtERLVGDAAKDQAARNpeNTVFDAKRLIGRRFDeETVQSDIK HWPFTVKGkqgkPVVEVEVKGEKREFNAEEISAMVLQKMKETAEAVL--- ------------------------GHSVRDAVITVPAYFNDSQRQATKDa atiAGLNAIRIINEPTAAALAYGLDKgiTDEKNILIFDLGGGTFDVSIls IAEGSIFevksTAGDTHLGGEDFDSRVLQHFMTEFKrktgkdissnprai rrlrtACERAKRTLSSSTEA---TVEVDSLFDGTDFYSKITRARFEELCA DLFRKTLEPVEKALRDAKTDKGRIDE------VVLVGGSTRIPKIQKLLK EFF----------NGKDLNCS------INPDEAVAFGAAVQAAVLSGVK- ----DDTIKDVLLVDVVPLShgietaggvmtnlidrntripakasktftt yadnqpgvsiqvyegeramt >gi|3122101|sp|O07111|FTSA_ENTFA_1:369 CELL DIVISION PROTEIN FTSAgi|2149908|gb|AAC45638.1| (U94707) cell division protein [Enterococcus faecalis] -------------------------------MNIIGVGNAKSDGLNRGIV VDIDQTVQAIQRAVRQAEEKAGIQIK-SVNVGLPANLLEVESCQGMIAVS SESKEITDEDVCNVASAALVRSTPPERQIVAILPQDFTVDGFEGIKDPRG MLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGINELVITPLALTETILT DGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGKSEPVRVDERYLSEIIE ARVEQILRKSKEVLDEIDA-------FELPGGVVLTGGAASIARYCRFRR KRFLeANVKL------YVPNHMGL----RNPVFANVISIVEYSAQLNDIY HiakyaiPGEKSKPAQSV---------avqqevrydtyaeqpqeeyeefn eresgekvtgkikdffsnifd >gi|311895|emb|CAA48873.1|_30:418 (X69121) heat shock protein [Plasmodium falciparum] mkqirpyilllivsllkfisavdsniegp---------VIGIDLGTTYSC VGVF--KNGRVEILnnelGNRITPSYVSFvdgERKVGEAAKLEATLHptQ TVFDVKRLIGRKFDdQEVVKDRSLLPYEIVNnqgkPNIKVQIKDKDTTFA PEQISAMVLEKMKEIAQSFL---------------------------GKP VKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAALAYGLDKK EETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDFDQRVMDY FIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST---QIEIEDI LEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSKIDE---- --IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG------INP DEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlgietvggi mtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|6968152|emb|CAB72969.1|_1:407 (AL139076) cell division protein ftsA [Campylobacter jejuni] M-----ILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGAI TNIELASKSIEEAVRSAEMMSGVHYD-RVVVSISGAYTKSVDSIGVVNIP NH--EIGIKEIHRAVSTAKhTANLPSGYEIIHVLPYNFKVNDLEHVDDPL GMSGNRLEVSTHIVISQESHIKNLKKAVELADLRVDNIVLSGYASAIACL DDSEKELGAVLIDMGGAICDMVVHTGNSIRYNDCLQIGSINITQDLSMAL HTPLKEAEKIKLNYAALSQQP--NTLIQIPSMGDERKVNeVSLDIISNVI YARAEETLMILAKILSDNRYA------NAIGGGVVLTGGMTKLAGIDELA PATFDnRSVRLA---TARKDLITGFSEIFNDPENTCAIGLCLYgaGYFTP YELDsneKLRYKGEIENFNRQIKQDI-vlqkdaeseiksdffdenlqend tiaiqeqldfkepkekkpsvfsniwhk >gi|5738968|dbj|BAA83426.1|_1:366 (AB031071) heat shock protein 70 [Toxoplasma gondii] --------------------------------------TTPSYVAFtdtE RLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMKHWPFKVIAgp gdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL------------ ---------------GKEVKEAVITVPAYFNDSQRQATKDagtiAGLSVL RIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLltIEDGIFEvk aTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsralrrlrtQCER TKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELCMDYFRNSLLP VEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLITDFF------ ----NGKEPCRS------INPDEAVAYGAAVQAAILKGVT-----SSQVQ DLLLLDVAPLSlgletaggvmtkliernttiptkksqtfttyadnqpgvl iqvyegeramt >gi|7467594|pir||G71679_3:411 cell division protein ftsa (ftsA) RP251 - Rickettsia prowazekiigi|3860813|emb|CAA14713.1| (AJ235271) CELL DIVISION PROTEIN FTSA (ftsA) [Rickettsia prowazekii] mk----EKISNFVTFDFGSSKIAVIAAYIsKKGEIKVASQNLHHSKGIKS GVILDLKNAETSILTAIYALEKDCGKNIN-KIILSLSGAETKSYYINYTI KINGQ--TVTQQDIKKLLQKALVEFKFKNQEIIHYFPLEFTLDNNS-VEN PIGMYGRALSCELHIISARSNLLSNIVQCFAKCHVEVTNITLAIYASAIS CLTNDEKNLGVLIIDIGDQTTSCGIFFADKLIYTWHLNIGSFHISLDIAK VFGIDLVTAEKLKILYGNAIIPLFeKDSIINMDDFHVDIPHNlnisLTIY RLAEVISARAEEILSMVKAEYDKATKGQFEVFR------VVITGGGSQLR GLKELSNKIFAKQSRIGKPE-----IIAGFTEDYNPAMYSAAIGMLKIHA LKQQKALshirLDENINFFKKAFDWFKENI- >gi|2921217|gb|AAC05357.1|_2:368 (AF026512) heat-shock protein Hsp70 [Beroe ovata] n-------------------------------------RTTPSYVAFndt ERLIGDPAKNQVAMNptNTIFDAKRLIGRKFTdSIVQSDMKLWPFDVVDe sgrPKIKVTHQCKDKTFFAEEISSMVLGKMKETAEAYL------------ ---------------GKTVNDAVITVPAYFNDSQRQATKDagviARINVL RIINEPIAAAIAYGLDKkgntQGERNVLIFDLGGGTFDVSIlsIEDGIFE vksTNGDTHLGGEDFDNRMVNHFKDEFRrehkmdmsnnkrslrrlrtACE RAKRTLSSSAQA---SIEIDALYEGIDFYTTLTKPRFEELNNDLFKKTTE CVEKAVRDAKMEKGEIHE------IVLVGGSTRIPKIQKLLEDFF----- -----KGKSLNKS------INPDEAVAYGAAVQAAILSGDK-----SEEV QDLLLLDVAPLSlgietaggvmtslikrnatiptkqsqkfttyadnqpgv liqvfegeramt >gi|3122010|sp|P94317|DNAK_BRAJA_4:393 DNAK PROTEIN (HEAT SHOCK PROTEIN 70) (HSP70) mgk---------VIGIDLGTTNSCVAVM--DGKNAKVIenseGMRTTPSI VAVtddgERLVGQPAKRQAVTNpeRTFFAVKRLIGRRYDdPMVEKDkklV PYKIVKASNGDAWVEADGQ--TYSPSQVSAFILQKMKETAEAHL------ ---------------------GQKVDQAVITVPAYFNDAQRQATKDagki AGLEVLRIINEPTAAALAYGLDKTKTGTIAVYDLGGGTFDISIleIGDGV FEvksTNGDTFLGGEDFDMRLVGYLADEFQkeqginlrndklalqrlkeA AEKAKIELSSTT-----QTEINLPFITADqtGPKHltmkLTRAKFEALVD DLIQKTVEPCRKALKDAGVTAGEIGE------VVLVGGMSRMPKVQEVVK QLF-----------GKEPHKG------VNPDEVVAIGAAIQAGVLQGD-- -------VKDVLLLDVTPLSlgietlggvftriidrnttiptkksqvfst aednqnavtirvfqgerema >gi|5805059|emb|CAB53636.1|_4:409 (AJ249201) cell division protein [Prevotella albensis] mpk-------EFIVAIELGSSKMTGIAGQKnLDGSISVLSIvEEDSTSCI RKGVVYNIEKTGQCLTSIMQKLKNNLKQDIT-HVYVGVGGQSIRSVKNVI VKDLPSAT-QVTQEMVNELMDANRNMSYP-DLEILDAATQEYKLDNQF-Q LDPVGIQCTHLEGNFLNILWRKNFYRNLNTCFDNAGIAIAEMYLAPLALA DSTLTDAEKRSGCVLIDLGADTTTVSVYYKNILRHLAVIPLGGSNITKDI A-SLQMEDSDAEKMKIKYASAFTE---NNEIDNtLSYSIDADRQIESRKF IEIVEGRVEEI-------IENAWFQVPNEYADKLLGGIILTGGGSNMPNI EKAFRSHTHiEKIRIAKFVtqaiNSKDPKITEHDGKLNTILGLLAKGDMN CAGGELHDDLFTQSEqkpTTTADIHQKPRDL--kettgtgvvmtaaekqk aeeearkkkeeeeeiarveaeklemeeaarrke >gi|1236795|gb|AAA93010.1|_1:286 (U25190) PBGRP [Plasmodium berghei] -------------------------------------------------- -------------------------------------------------- DKDTTFAPEQISAMVLEKMKEIAQSFL----------------------- ----GKPVKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAAL AYGLDKKEETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDF DQRVMDYFIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST--- QIEIEDIVEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSK IDE------IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG-- ----INPDEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlg ietvggimtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|436763|dbj|BAA02189.1|_1:316 (D12692) heat shock protein [Theileria sergenti] -------------------------------------------------- --------------------------------MKHWPFKVTNgpngkPNI EVTFQGERKTFHAEEISSMVLTKMKEIAEAFI------------------ ---------GKTVKDVVITVPAYFNDSQRQATKDagtiAGLNVMRIINEP TAAAIAYGLDKksGGEKNVLIFDLGGGTFDVSIltIEDGIFEvkaTAGDT HLGGEDFDNLLVEHCVRDFMrlnngknlssnkralrrlrtHCERAKRVLS SSTQA---TIELDSLYEGIDYNTTISRARFEELCNEKFRSTLVPVEKALE SSGLDKRSIHE------VVLVGGSTRIPKIQSLIKSFF----------NG KEPCRS------INPDEAVAYGAAVQAAILSGNQ-----SEKIQELLLLD VAPLSlgletaggvmtvlikrnttiptkknqifttnedrqegvliqvfeg eramt >gi|4164594|gb|AAD05564.1|_5:285 (AF111194) heat shock protein 70 [Paracoccidioides brasiliensis] sara---------------------------------------------- -------------------------------------------------- ----------------SMVLTEVRETAESYL------------------- --------GGTVNNAVVTVPAYFNGSQRQATKDagliAGLNVLRIINEPT AAAIAYGLDKkaEGERNVLIFDLGGGTFDVSLltIEEGIFEvksTAGDTH LGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlrtACERAKRTLSSA AQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVLRDA KIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF----------NGKE PNKS------INPDEAVAYGAAVQAAILSGDS----TSKSTNEILLLDVA PLSvgietaggvmtplikrnttiptkksetfstfadnqpgvliqvfeger art >gi|3122104|sp|O07827|FTSA_PORGI_4:408 CELL DIVISION PROTEIN FTSAgi|2209034|dbj|BAA20534.1| (AB004555) FtsA [Porphyromonas gingivalis] msrM-----NTIYAVIDLGSWYIRGMVARKmEDGRVSPISFYEEPaNNCI RHGCVHNIDEAAAIIRRIVNQLNENLEDNTHiTSLYVGVGGQSIASQEFI VRKAMVPEGEVIRTEHIESLWAEMRGASFP-DKEVLDVTDPLFYVDGKQE IQ-AKGVFCHELEARFQLITARRSVKQNIRIAIEErLGLRLAGILVTPLC EAQVLLSDDELTLGCCYVNIGAGCTSVSIYKNRLLAMLRVLPMGGYNVTR DLT-SLRLTEQEAENMKLNHVSMINDNKSNGSFRMTFADKFSEREFRSSE VNRLAKARMDEITANYLNILRLSGLL------EDIGAGIILNGGGTKINN YMAAMKKILGevTPAKI----RMDRIDTDNAISFIEG--HISTIGLAYKA TQPCTDYITTNLGELVSQIETKEETPANdtvqdlfaqdrqaerkeneqrd ntdrqredtprqtlkkkektgpsfgd >gi|729993|sp|P39751|MBL_BACSU_1:333 MREB-LIKE PROTEIN (MBL PROTEIN)gi|2120019|pir||I40531 cell shape determining protein mbl - Bacillus subtilisgi|531460|gb|AAA67878.1| (U12962) Mbl protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVPVLVA------- ----------ENPMDCVAIGTGVM----------------LDNMDKLPKR KLS >gi|6983753|emb|CAB75392.1|_5:327 (AL139298) rod shape-determining protein [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigrtpgNIVAVRPLKDGVIADFEITERMLRYFILKIHKR- RYLARPRVVVCVPSGITGVE------------------------------ ------------------------------------------------RR AVIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVA VISLGGIVTAQSIRVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGS AYDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAVKTT LDKC---PPELSGDIMDRGIVLTGGGALLRGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|266568|sp|Q01465|MREB_BACSU_5:331 ROD SHAPE-DETERMINING PROTEIN MREBgi|322181|pir||A45240 rod shape-determining protein envB - Bacillus subtilisgi|143212|gb|AAA22605.1| (M95582) putative [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFARkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|7444226|pir||D69660_5:331 rod shape-determining protein envB - Bacillus subtilisgi|142855|gb|AAA22397.1| (M96343) MreB protein [Bacillus subtilis]gi|2635268|emb|CAB14763.1| (Z99118) cell-shape determining protein [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFTRkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|417314|sp|P32444|MBL_BACCE_1:332 MREB-LIKE PROTEIN (MBL PROTEIN)gi|484937|pir||PN0441 mreB protein - Bacillus cereusgi|49005|emb|CAA44237.1| (X62374) MREB [Bacillus cereus]gi|4584137|emb|CAB40597.1| (AJ010138) mreB-like protein [Bacillus cereus] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVAIdrntgkvlavg eearsmvgrtpgNIVAIRPLKDGVIADFEITEAMLKYFINKLDVK-SFFS KPRILICCPTNITSVE---------------------------------- --------------------------------------------QKAIRE AAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSM GDIVTSSSIKMAGDKFDMEILNYIKRKYKlligerTSEDIKIKVGTVFPG ARsEELEIRGRDMVTGLPRTitVCSEEITEALKENAAVIVQAAKGVLERT ---PPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIA------- ----------ENPMHCVAVGTGIM----------------LENIDRLPKR AL-r >gi|3122102|sp|O07325|FTSA_STAAU_2:367 CELL DIVISION PROTEIN FTSAgi|2149897|gb|AAC45628.1| (U94706) cell division protein [Staphylococcus aureus] m-----EEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGL IDDFDIARQAIKDTIKKASIASGVDIK-EVFLKLPIIGTEVYDESNEIDF YEDT-EINGSHIEKVLEGIREKNDVQETEVINVFPIRFIVDKENEVSDPK ELIArHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYG-SI LTATEKELGACVIDIGEDVTQVAFYERGELVDADSIEMAGRDITRRYC-- --TRIKalLMKLLKKLNTNMVMHSMILLQIKISSLLNRLIVMkqysIPQK DLSDFIEARVEEIFFEVFDVLQDLGL-------TKVNGGFIVTGGSANLL GVKELLSDMVSEKVRI------HTPSQMGI----RKPEFSSAISTI---- ---------------------------sssiafdelldyvtinyhdneet eedvidvkdkdnesklggfdwfkrktn >gi|7444221|pir||E71826_10:342 rod shape-determining protein - Helicobacter pylori (strain J99)gi|4155891|gb|AAD06861.1| (AE001551) ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLVRDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|2920363|gb|AAC04558.1|_10:342 (U95641) rod shape-determining protein [Helicobacter pylori] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KNQVREISSALRSVLEEV---KPDLVKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444224|pir||E64691_10:342 rod shape-determining protein - Helicobacter pylori (strain 26695)gi|2314543|gb|AAD08416.1| (AE000637) rod shape-determining protein (mreB) [Helicobacter pylori 26695] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKVHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEstlsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLAKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444223|pir||E71316_1:326 probable rod shape-determining protein (mreB) - syphilis spirochetegi|3322787|gb|AAC65484.1| (AE001226) rod shape-determining protein (mreB) [Treponema pallidum] MFFLRRFSADVGIDLGTCNTIIYVEGRgiVVNEPSVVAVergtksvvavg sdakrmlwktpgNIVAIRPLKDGVIADMDTTEKMIRYFISKILPR-HRLI KPRMVIGIPSCITDVE---------------------------------- --------------------------------------------CRAVHE SASKAGAGEVEVLEESLAAAIGANIPIEEPAGNMVCDIGGGTTEVSVISL LGMVVTNAIRVGGDEFDQAIIKHVRSVHNliigeqTAERLKIEIGNASPE KNiEKVEVKGTDAITGLPRRleIDSVEVREALKEPITQIVEEIKRTLART ---PPELAADIVERGIVMTGGGSLLKGLPKLISKETHVPVILA------- ----------ENPMNCVAIGAGRYH------------------------- ---evykdisgdrslyaglns >gi|2636166|emb|CAB15658.1|_1:302 (Z99122) MreB-like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVP----------- -------------------------------------------------- ---gprcwkilwia >gi|730060|sp|P39763|MREH_BACSU_7:322 MREBH PROTEINgi|7444227|pir||C69660 cell-shape determining protein mreBH - Bacillus subtilisgi|520840|dbj|BAA07047.1| (D37799) mreBH [Bacillus subtilis]gi|2633818|emb|CAB13320.1| (Z99111) cell-shape determining protein [Bacillus subtilis]gi|3282132|gb|AAC24922.1| (AF012285) unknown [Bacillus subtilis] mfqste----------IGIDLGTANILVYSKNKgiILNEPSVVAVdtttk avlaigadaknmigktpgKIVAVRPMKDGVIADYDMTTDLLKHIMKKAAK SIGMSFRkPNVVVCTPSGSTAVE--------------------------- -------------------------------------------------- -RRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTT EVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNlligerTAEQVKME IGHALIEHIpEAMEIRGRDLVTGLPKTimLQSNEIQDAMRESLLHILEAI RATLEDC---PPELSGDIVDRGVILTGGGALLNGIKEWLTEEIVVPVHVA -----------------QNPLESVAIGTGR-------------------- ----------slevidklqkaik >gi|1684654|emb|CAB05381.1|_1:300 (Z82987) MreB like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELK------------- -------------------------------------------------- ---v >gi|2253079|emb|CAA74597.1|_5:326 (Y14206) merB [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigarrNIVAVRPLKDGVIADFEITERMLRYFILKIHKR-R YLARPRVVVCVPSGITGVE------------------------------- -----------------------------------------------RRA VIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVAV ISLGGIVTASP-SVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGSA YDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAgSRTT LDKC---PPELSGDIMDRGIVLTGGGALLPGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|6967753|emb|CAB72744.1|_13:339 (AL139074) homolog of E. coli rod shape-determining protein [Campylobacter jejuni] mildqligffss---------DMGIDLGTANTLVLVKDKgiVINEPSVVA VererydskakilavgkeakdmvgktpgNIEAIRPMKDGVIADFDMTEKM IRYFIEKTHRR-KSFLRPRIIISVPYGLTQVE------------------ -------------------------------------------------- --------------RKAVREsalsAGAREVFLIEEPMAAAIGASLPIQEP KGNLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNl iigerTGEEIKITIGSAIQLPKeLSMVVKGRDQVSGLLSRieLTSEDVRE AMREYLKEIADALKMVLEMM---PPDLASDIVENGVVLTGGGALIRGLDK YLSEIVRLPVYIA-----------------DEPLLAVAKGTGKA------ ----------LEEISLL------qqltnee >gi|7444225|pir||B70189_16:347 rod shape-determining protein (mreB-1) homolog - Lyme disease spirochetegi|2688645|gb|AAC67059.1| (AE001171) rod shape-determining protein (mreB-1) [Borrelia burgdorferi] mellwktfrevvlnl---FKSFLIDIGIDLGTCNTLVYIKDYgvVMSEPS VVAIditkgnkvvavgrnakkmlwktpeNIKAVRPLRDGVIADIENTEKM IKYFINQIFSRKKLFFKPRMVIGVPTCITEVE------------------ -------------------------------------------------- --------------RRAVKEsamnAGAREVKVIEESLAAAIGSDIPIFEP TGHMVCDIGGGTTEISVISLGGMVVSRAIRTGGDEFDESIIKYMRNSHNi iigqqTAEKLKIKIGNVYPDIQnlrvEKIDIKGTDAVTGLPRKqlVDSME VRESLQEPINVVVDEVKRTLGAT---PPELATDIVERGIILTGGGALLKG LNRLLSKETGVPVYVA-----------------DNPLLSVAVGAGLFYDY AN------------------------ridiskniysfine >gi|300265|gb|AAB26551.1|_43:346 HSP68=68 kda heat-stress DnaK homolog [Lycopersicon peruvianum=tomatoes, Peptide Mitochondrial Partial, 580 aa] ellvgtpakrqavtnptntlsgtkrligrrfddpqtqkemkm-------- -------------------------------------------------- ------------------------VPYKIVKGSNGDAWVEANGQ--QYSP SQIGAFILTKMKETAEAYL---------------------------GKSI NKAVITVPAYFNDAQRQATKDagriAGLDVQRIINEPTAAALSYGMNS-K EGLVAVFDLGGGTFDVSIleISNGVFEvkaTNGDTFLGGEDFDNALLEFL VSEFKrtegidlskdklalqrlreAAEKAKIELSSTS-----QTDINLPF ITADasgakhLNITLTRSKFETLVNNLIERTRNPCKNCLKDAGVSLKDVD E------VLLVGGMTRVPKVQEIVSEIF-----------GKSPSKG---- --VNPDEAVAMGAALQGGILRGD---------VKELLLLDVTPLSlgiet lggiftrlinrnttiptkksqvfstaadnqtqvgikvlqgerema >gi|7579069|gb|AAF64243.1|AF252299_1_1:252 (AF252299) hsp70 BiP [Entamoeba invadens] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------TVPAYFNDAQRQATKDagkiAGLNVLRILNEPTAAAM AYGLNKvTGEKNILVFDLGGGTFDVSLlnIEENVFDvvsTSGDTHLGGSD FDQKVTEYLLDVFKrkygkdvskdkravtrlrrEAERAKRTLSVQQQD-- -RIEIENLADGVDFSFTLTRAKFEELNMDLFKSTIAPVKKVLEDSKMSKG AIHE------VVLVGGSTRIPKVQQLLKEFF----------NGKEPSRG- -----INPDEAVAYGAAVQGGVLSNIKG-------TEDIVLLDTTPL-tl gietvggvmtsliprnthipisksqifstyqdnqqsvtiqvfegeram >gi|1346046|sp|P47203|FTSA_PSEAE_7:230 CELL DIVISION PROTEIN FTSA tssssr-------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------------------------------LAS AYSVLTEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTND IAMALRTPTQYAEEIKIRYACALAKLAgAGETIKVPTVGDRPPGELSRQA LAEVVEPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEG AVELAEEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQ KQSDGMsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|7462820|pir||A72273_1:382 hypothetical protein TM1277 - Thermotoga maritima (strain MSB8)gi|4981835|gb|AAD36352.1|AE001783_3 (AE001783) cell division protein FtsA, putative [Thermotoga maritima] --------MIFALDVGTRKIAGLIAVEEKGTIRIVdsELIEHKTRTMFDG QVHDVLGVAETVKEVKERLESRNEIELK-EVAVALAGRFLKTQVGEAELD FSKVG-HITREDVMKLEIEAVtkaQESVEEDFFCVGYSVVEYRLDGMW-M KKLEGHRGGKAYVKVVSAFLPVHVVDSLMRVLETVGLTPVHVTLEPIAAM DLTVPEDLRYLNISLVDVGAGTSDIAISKEGTVVAYGMIPMAGDEITEAI GKKFLLDFQTAEHVKRTVFS-------EERVKVKNI-LDREIELNVREVS EAIKPVVDQITTEISTVVTELN--------GGAPSVVMVVGGGAKVPGFV ESLARKLDLPlDRV----SLKSVESTGLVEdltgKVKGSEYITPVGIAYS AMRNRGSV--------FSQVF--------vngvpvklmggvgrysvmqvl iqagyrfsslvggemisfelngktllrpk >gi|2829291|gb|AAC00520.1|_1:280 (AF044413) HSP70 [Schistosoma japonicum] -------------------------------------------------- -------------------------------------------------- ---------QIGAFVLIKMKETAESYL----------------------- ----GSKVKNVVITVPAYFNDSQRQATKDagkiAGMEVLRVINEPTAAAL AYGLDRTDDKTIAVYDLGGGTFDISVleIQKGVFEvksTNGDTFLGGEDF DNELLRFLVKEFQreqgidvtkdpmalqrvkeAAEKAKIELSSSL----- QTDINLPYLTMDkaGPKHmhlkLTRAKLEHLVEPLIKRTIDPCNKALKDA EVKASDIGE------IILVGGMTRMPKVQETVEKIF-----------GKT PSKS------VNPDEAVAMGAAIQGGVLAGD---------VTVVLLLDVT PLSlgietlggvmtklinrnttiptkksqvfstaadgqtqveikvyqger ema >gi|2253225|gb|AAB62884.1|_3:225 (AF004553) 70 kDa heat shock protein [Paracoccidioides brasiliensis] ar------------------------------------------------ -------------------------------------------------- -------------------------------------------------- ---------------------------------------------AAIAY GLDKkaEGERNVLIFDLGGGTFDVSLltIEEAIFEvksTAGDTHLGGEDF DNRLVNHFVNEFKrtdkkdlffnaralrrlrtACERAKRTLSSAAQT--- SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVVRDAKIDKSS VHE------IVLVGGSTRIPRIQKLVSDFF----------NGKEPNKS-- ----INPDEAVAYGAAVQAAILSGDT----TSKSTNEILLLDVAPLSvgi etaggvmtplikrnttiptkksetfstfadnqpgvliqvfegerart >gi|2706556|emb|CAA78755.1|_1:221 (Z15037) heat shock protein 70 [Aplysia californica] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------YFNDAQRQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------INPDEA------------------------------------- >gi|345402|pir||A44261_1:209 dnaK-type molecular chaperone HSP70a - California sea hare (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------RQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------------------------------------------------- >gi|2661598|emb|CAA15711.1|_14:456 (AL009196) /prediction=(method:""genefinder"", version:""084"", score:""150.41""); /prediction=(method:""genscan"", version:""1.0""); /match=(desc:""HEAT-SHOCK PROTEIN 110 KD (KIAA0201)"", species:""HOMO SAPIENS (HUMAN)"", ranges:(query:12688..12861, t>gi|7290308|gb|AAF45769.1| (AE003423) EG:25E8.1 gene product [Drosophila melanogaster] mklvlllsallag-IALSQGAAVMSVDLGSEWMKVGVvspgvpmeialnR ESKRKTPAILAFrdgtrtigEDAQTIGIKdpnSAYGYLLDLLGKTIDNPI VDLYRK-----------RFPYYNIVGDPERNTVVFrKSDTDEFSVEElVA QLLVKAKQFAQESVQQP----------------------------ITECV LTVPGYFGQAEREALLSaaqlANLKVLQLINDYAAVALNYGVFHRGEINe taqyFLFYDMGAYKTSAAVVSYQLVKdkqtreINPVVQVlgvgydrtlGG LEIQLRLRDYLAQEFNalkktktdvttspralaklfkEAGRLKNVLSANT EF---FAQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSH LS------LDVINQVILFGGGTRVPRVQETIKAVI--KQELGKNLNADES ATMGAVYKAADLSagfkvkKFVVKDATLFPLQVSFERDPGDGAA-VKQVK RALFALMNpypqkkvitfnkhtddfefyvnyadldryskeeiaalgslnv tkvqlkqv >gi|1854603|gb|AAB48222.1|_1:215 (U49134) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGLDKKKDETIAVFDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDDI DEALVGWIIDEFKkdqgidlaqdkmalqrlkEPSRAKVELSSAM-----E TEIQLPFITADasGPKHlvmkLTRAKFEALVEPLLKRLMPPVEQAIKDAG LEPKDIEE------IVLVGGSTRIPKVQEMVKGFF-----------GKEP NKS------VNPDEAVA--------------------------------- -- >gi|295365|gb|AAA30206.1|_1:208 (L14478) heat shock protein 70 [Trypanosoma brucei] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagsiAGLEVLRIVNEPTAAAI AYGRDRsseGAMKTVLIFDLGGGTFDVTLlnIDGGLFEvraTAGDTHLGG EDFDSRLVDYFATEFRtrtgkdlrgnaramrrlrtACERVKRTLSSSAST ---NIAIDALYEGFDFFSKITRARFEEMCRDQFERCLEPVRKVLKDAEVD ASAVDD------VVLVGGSTRIPRVQQLVQNFF----------NGKELNR S------------------------------------------------- >gi|1854597|gb|AAB48219.1|_1:216 (U49131) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagqiAGLEVERIINEPTAAAL AYGLEKKKNEKIVVFDLGGGTFDVSVleVTEELVEvlsTNGDTHLGGDDF DEELINFIAGKFKaehgidlrkdpmalqrlreAAEKGKKELSSSQ----- QTDINPPFITADasgakhLQMSITRAEFERLCDPLFERCREPVTKALKDA KLDPKEIDE------VVLVGGSTRIPKVQELVREMF-----------GKE PHKG------VNPDEAVA-------------------------------- --- >gi|1854613|gb|AAB48227.1|_1:216 (U49139) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGSDKKKDETIAVYDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDNI DQKVMDWIVDEFIkdqgidlskdkmalqrlkeAAEKAKMELSSVM----- ETEINLPFIIADasGPKHltmkLTRARFEQLVEDLLQKSVGPCKQALSDA GVKPEQIDE------VVLVGGSTRIPRVQQIVRDLF-----------KKE PHKG------VNPDEAVA-------------------------------- --- >gi|1084481|pir||S48023_1:172 dnaK-type molecular chaperone hsp70.1 - maize (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------GGEDFDNRMVNHFV QEFKrknkkditgnpralrrlrtACERAKRTLSSTAQT---TIEIDSLYE GIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHD------ VVLVGGSTRIPRVQQLLQDFF----------NGKELCKN------INPDE AVAYGAAVQAAILSGE-----GNEKVQDLLLLDVTPLSlgletaggvmtv liprnttiptkkeqvfstysdnqpgv >gi|1808585|emb|CAA67132.1|_5:160 (X98508) heat shock protein 70 [Agaricus bisporus] slln---------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------INGGVFAvkaTAGDTHLGGEDFDN ALLEHFKNEFKkktkfdisddaralrrlrsACERAKRTLSSVTQT---MV EVDSLYQGEDFSASITRARFEEINAVLFKSTLEPVEKVLKDAKMAHEKVD D------IVLVGGSTRIPKVQALVSEYF----------GGRQLNKS---- --INPDE-------------------------------------- >gi|1196309|gb|AAB51401.1|_1:96 (L76303) putative [Borrelia burgdorferi] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------RPPQEKSRKELSVIINS RLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPGISNLIEE VFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY---------- -------------------kheqqkfnklkkvsskvkrknkissklkgwf lkewf >gi|6715488|gb|AAF26433.1|AF218835_4_1:109 (AF218835) putative FtsA ortholog [Clostridium perfringens] M-----SKNIVGLDIGNRNICASISGEnENGEFEVLDFIVKDLQGVSKGK IIDEESVVKTIKECLKELEEKSGHNIR-GVYLSLKNNDCRMVENKGYSYT DNDDSLVFKENVEEA----------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------- >gi|1518098|gb|AAC24602.1|_3:83 (U65939) ATP binding protein [Azotobacter vinelandii] sy------------------------------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------PPACLLTGGSAKMEGAVELA EEIFHMPVRLGVPH-----SVRGMDDVIGNPIYSTGVGLLLYGLQKQTEA RRIR----HQQLWRRNQDTC-pgttqrwfqgnf >gi|420209|pir||S12830_2:53 heat shock protein 70 - mouse (fragments) d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDVL --------------------iqvyegeramtkdwldknqta >gi|55072|emb|CAA38267.1|_2:51 (X54401) heat shock protein 70 cognate [Mus musculus] d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGD-- -------------------- --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 01:05:43 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id BAA07250 for Message-Id: <200005192309.QAA21217@alpha.cse.ucsc.edu> Subject: T0089(target 99 alignment) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 alignment in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99align.a2m' Content-Disposition: attachment; filename="t99-results.t99align.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESV NTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALE KLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDT VKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKH VIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC YANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETPVKSENPLKKIFRLFKELME >gi|2707899|gb|AAB92376.1|_1:408 (AF038380) FtsA [Pseudomonas putida] MANAHSGKMIVGLDIGTSKVVALVGEVgEDGTLEIVGIGTHPSRGLKKGV VVNIESTVQSIQRAVEEAQLMAGCRIH-SAFVGVAGNHIRSLNSHGIVAI RDR--EVSLADLERVLDAAQAVAIPADQRVLHTLPQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNAAQNIEKCVRRCGLEIDDIILEQLASAYSVL TDDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYTCALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLIQAELRRSGYE------DLVPAGIVLTGGTAKMEGAVELA EEIFHMPVRLGVPH-----SVRGLSDVVRNPIYSTGVGLLTYGLLKQSED LalTGNSNSSSNSYGDEPKAPV-lerfkkwvqgnf >gi|6715614|gb|AAA95992.2|_1:413 (U19797) FtsA [Pseudomonas aeruginosa] MASVQSGKMIVGLDIGTSKVVALVGEVtADGQLEVVGIGTHPSRGLKKGV VVNIESTVQSIQRAIDEAQQMAGCRIH-SAFVGIAGNHIRSLNSHGIVAI RDR--EVNPADIERVLDAAQAVAIPADQRVLHTLAQDYVIDNQEGVREPL GMSGVRLEAKVHVVTCAVNASQNIEKCVRRCGLEVDDIILEQLASAYSVL TEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMAL RTPTQYAEEIKIRYACALAKLAgAGETIKVPSVGDRPPRELSRQALAEVV EPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEGAVELA EEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQKQSDG MsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|120568|sp|P06137|FTSA_ECOLI_1:386 CELL DIVISION PROTEIN FTSAgi|72941|pir||CEECA cell division protein ftsA - Escherichia coligi|40862|emb|CAA38871.1| (X55034) FtsA protein [Escherichia coli]gi|41494|emb|CAA26590.1| (X02821) ftsA protein [Escherichia coli]gi|216508|dbj|BAA01359.1| (D10483) cell division protein ftsA [Escherichia coli]gi|1786282|gb|AAC73205.1| (AE000118) ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGAAQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|146025|gb|AAA23811.1|_1:386 (M36531) cell division protein [Escherichia coli]gi|146032|gb|AAA23817.1| (K02668) ftsA protein [Escherichia coli] MIKATDRKLVVGLEIGTAKVAALVGEVlPDGMVNIIGVGSCPSRGMDKGG VNDLESVVKCVQRAIDQAELMADCQIS-SVYLALSGKHISCQNEIGMVPI SEE--EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPV GLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVL TEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF GTPPSDAEAIKVRHGCALGSIVgKDESVEVPSVGGRPPRSLQRQTLAEVI EPRYTELLNLVNEEILQLQEKLRQQGvKHHLAAGIVLTGGARQIEGLAAC AQRVFHTQVRIGAPL-----NITGLTDYAQEPYYSTAVGLLHYG------ ----------------------keshlngeaevekrvtasvgswikrlns wlrkef >gi|7380686|emb|CAB85276.1|_3:396 (AL162758) cell division protein [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQLENGAVQER----------eggggllarlkrwiensf >gi|7225649|gb|AAF40864.1|_3:396 (AE002398) cell division protein FtsA [Neisseria meningitidis] me----QQQRYISVLDIGTSKVLALIGEVqDDDKINIVGLGQAPSRGLRA GMVTNIDATVQAIRQAVNDAELMADTKIT-HVTTGIAGNHIRSLNSQGVV KIKDG--EVTQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVRE PIGMSGVRLDTRVHIITGASTAVQNVQKCIERCGLKSDQIMLQPLASGQA VLTEDEKDLGVCVIDIGGGTTDIAVYMNGAIRHTSVIPAGGNLITKDLSK SLRTPLDAAEYIKIHYGVASCDTEgLGEMIEVPGVGDRTSRQVSSKVLAA IISARIQEIFGVVLGELQKSGF-PKEVLN----AGIVLTGGVSMMTGIVE FAEKIFDLPVRTGAPQ-----EMGGLSDRVRTPRFSTAIGLLHAACKLEG NLPQPENGAVQER----------eggggllarlkrwiensf >gi|3023796|sp|Q44774|FTSA_BORBU_5:377 CELL DIVISION PROTEIN FTSAgi|7443770|pir||D70137 cell division protein (ftsA) homolog - Lyme disease spirochetegi|1165284|gb|AAA85623.1| (U43739) FtsA [Borrelia burgdorferi]gi|2688166|gb|AAC66648.1| (AE001137) cell division protein (ftsA) [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGEVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|1200208|emb|CAA78155.1|_5:377 (Z12164) ftsA [Borrelia burgdorferi]gi|1234875|emb|CAA65463.1| (X96685) ftsA [Borrelia burgdorferi] msrn--------LIVGLDVGTSKICTVVAEVnLNDQLEIVGIGTSISRGV RKGVLINIEAALDSISNSIEAAELISGCDIT-SLSVSMSGSSVEGTNSRG VVAINSKTREINEEDVERVIEAAKAIVIPMDREILHVIPQEFIVDGIPHI KNPIDMMGIRLEGGVHIITGSSSSSQNLVRCVNRAGFAVDEVVLGSLASS YATLSKEEREMGVLFIDMGKGTTDIILYIDGSPYYTGVIPIGVNRVTLDI AQVWKVPEDVAENIKITAGIAHPSILesQMETVIIPNLGTRPPQEKSRKE LSVIINSRLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPG ISNLIEEVFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY--- --------------------------kheqqkfnklkkvsskvkrknkis sklkgwflkewf >gi|121570|sp|P07823|GR78_MESAU_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|90188|pir||A27414 dnaK-type molecular chaperone GRP78 precursor - Chinese hamstergi|304510|gb|AAA51448.1| (M17169) glucose-regulated protein [Cricetulus griseus] mkfpmvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|109893|pir||A37048_24:414 dnaK-type molecular chaperone grp78 precursor - mouse mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|2506545|sp|P20029|GR78_MOUSE_24:414 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|121574|sp|P06761|GR78_RAT_23:413 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP) (STEROIDOGENESIS-ACTIVATOR POLYPEPTIDE)gi|279683|pir||HHRTGB dnaK-type molecular chaperone precursor - ratgi|203151|gb|AAA40817.1| (M14050) preimmunoglobulin heavy chain binding protein [Rattus norvegicus] mkftvvaaallllcavraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|2598562|emb|CAA05361.1|_24:414 (AJ002387) BiP [Mus musculus] mmkftvvaaallllgavraeeed--KKEDVGTVVGIDLGTTYSCVGVF-- KNGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDA KRLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEI SAMVLTKMKETAEAYL---------------------------GKKVTHA VVTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEK NILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIK LYKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEG EDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------I VLVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEA VAYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgi etvggvmtkliprntvvptkksqifstasdnqptvti >gi|6470150|gb|AAF13605.1|AF188611_1_5:395 (AF188611) BiP protein [Homo sapiens] meed--KKEDVGTVVGIDLGTTYSCVGVF--KNGRVEIIandqGNRITPS YVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRLIGRTWNdPSVQQDIKF LPFKVVEkktkPYIQVDIgGGQTKTFAPEEISAMVLTKMKETAEAYL--- ------------------------GKKVTHAVVTVPAYFNDAQRQATKDa gtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNILVFDLGGGTFDVSLltI DNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYKkktgkdvrkdnravqk lrrEVEKAKRALSSQHQA---RIEIESFYEGEDFSETLTRAKFEELNMDL FRSTMKPVQKVLEDSDLKKSDIDE------IVLVGGSTRIPKIQQLVKEF F----------NGKEPSRG------INPDEAVAYGAAVQAGVLSGDQDTG D-----------------lvlldvcpltlgietvggvmtkliprntvvpt kksqifstasdnqptvti >gi|6900104|emb|CAB71335.1|_23:413 (AJ271729) glucose-regulated protein [Homo sapiens]gi|7229462|gb|AAF42836.1|AF216292_1 (AF216292) endoplasmic reticulum lumenal Ca2+ binding protein grp78; BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgie tvggvmtkliprntvvptkksqifstasdnqptvti >gi|4033392|sp|Q90593|GR78_CHICK_21:411 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|2134273|pir||I50242 dnaK-type molecular chaperone - chickengi|211827|gb|AAA48785.1| (M27260) 78-kD glucose-regulated protein precursor [Gallus gallus] mrhlllallllggaraddee--KKEDVGTVVGIDLGTTYSCVGVF--KNG RVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAKRL IGRTWNdPSVQQDIKYLPFKVVEkkakPHIQVDVgGGQTKTFAPEEISAM VLTKMKETAEAYL---------------------------GKKVTHAVVT VPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKNIL VFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKLYK kktgkdvrkdnravqklrrEVEKAKRALSSQHQA---RIEIESFFEGEDF SETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IVLV GGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAVAY GAAVQAGVLSGDQDTGD-----------------lvlldvcpltlgietv ggvmtkliprntvvptkksqifstasdnqptvti >gi|3122097|sp|O30991|FTSA_AGRTU_20:443 CELL DIVISION PROTEIN FTSAgi|2465464|gb|AAC45820.1| (AF024659) cell division protein [Agrobacterium tumefaciens] msffgsshfglprlkplss----KRSHIVSVLDIGSTKVVCMIgrltprq eseiLPGRTHKVEIIGIGHQRSRGVKSGVIADLDALEGVIRLSVDAAERM AGLTVD-SLIVNVSAGRLASDIYTASIDLGGQ--EVEASDLRKVLVAASQ QSMRQDRAILHSLPTGYSLDGERGIRDPLSMYGDLLGVDMHVVTVERTAL KNLELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTI SVFAEGRLIHTDAIGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALLNG AdERDMISIPPIGEDdrdQPSQVSRALVTRIVRARIEETLELIRDRIQKS GFS------PIVGKRVVLTGGASQLTGLPETARRILARNVRIGRPM---- -GVAGLPVAAKGPAFSTACGLMIYPQVADIEIHaaqggmfspFGNGSGRI ARVGQWLKESF- >gi|120567|sp|P28264|FTSA_BACSU_1:373 CELL DIVISION PROTEIN FTSAgi|2126939|pir||I39847 cell-division protein (septum formation) ftsA - Bacillus subtilisgi|142940|gb|AAA22456.1| (M22630) ftsA [Bacillus subtilis]gi|2633899|emb|CAB13401.1| (Z99111) cell-division protein [Bacillus subtilis] M---NNNELYVSLDLGTSNTKVIVGEMTGDSLNIIGVGNVPSEGLKKGSI VDIDETVHSIRKAFDQAERMVGFPLR-KAIVGVNGNYINIQDTNGVVAVS SENKEIQVEDVRRVMAAAQVVSVPHEQLIVDVIPKQFIVDGRDEITDPKK MLGVRLEVEGTLITGSKTILHNLLRCVERAGIEITDICLQPLAAGSAALS KDEKNLGVALIDIGGGSTTIAVFQNGHLTSTRVIPLGGENITKDISIGLR TSTEEAERVKKQLGHAYYDEAsEDEIFEVTVIGTNQKQTFTQQEAANIIE ARVEEILEIVSEELRSMGI-------TDLPGGFVLTGGQAAMPGVMSLAQ DVLQNNVRV------QGPNYIGV----RDPQYMTGVGLIQFACR------ --------------------nariqgrkigfkmpeeaiqeiavssseeqe qhhhqnevqqrpkgkqktqa >gi|1230567|gb|AAC05418.1|_5:400 (U46464) heat shock protein 70 [Ajellomyces capsulatus] mapa----------VGIDLGTTYSCVGIF--RDDRIEIIandqGNRTTPS FVAFtdtERLIGDAAKNQVAMNpaNTVFDAKRLIGRKFAdPEVQADMKHF PFKITDkggkPVIQVEFKGETKEFTPEEISSMVLTKMRETAEAYL----- ----------------------GGTVNNAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDKkaDGERNVLIFDLGGGTFDVSLltIE EGIFEvksTAGDTHLGGEDFDNRLVNHFVSEFKrkfkkispaeraralrr sptACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDL FRSTMEPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDF F----------NGKEPNKS------INPDEAVAYGAAVQAAILSGDT--- -SSKSTNEILLLDVAPLSlgietaggvmtplikrnttiptkksetfstfs dnqpgvliqvfegerart >gi|4033383|sp|O51928|FTSA_BUCAP_1:416 CELL DIVISION PROTEIN FTSAgi|2738588|gb|AAC46068.1| (AF012886) cell division protein [Buchnera aphidicola] MIISKNRKLVVGLEIGTTKVVTLVGEVlTNGKIKIIGIGICQSNGIDKGR INDLDAVISCIRESIHQAEIMANCQIT-SVYLSLSSKYINCPNEIGIVPI SED--EVTKEDIENVIHTAKSVKILNEHHILHVIPQEYSIDQQSGIKNPI GLSGTRMQVRVHLITCHQNMAKNIIKAVEKCDIKVDQVIFSGLASSKAVL TEDECKLGVCMIDIGGGTIDLITYIDGSIQDSQVIPYAGNIVTKDISYAF STSYSDSEKIKIKYGSAIKLSPgTSKNIDLSSKYGNFQKNLQQDTVIEVI DSRYNELLHLINNRILYVQKKLYKEGrKYQLTGGIVLTGGASTISFLTEC AEKIFQKKIRIAKPL-----NISGLTDNVTEPHYSTVVGLLHYGKEFYFD DTNQKREisfieKWFQKISNWFKK---ef >gi|1169751|sp|P45068|FTSA_HAEIN_1:419 CELL DIVISION PROTEIN FTSAgi|1073923|pir||H64185 cell division protein ftsA - Haemophilus influenzae (strain Rd KW20)gi|1574698|gb|AAC22797.1| (U32794) cell division protein (ftsA) [Haemophilus influenzae Rd] MVKGVETKTIVGLEVGTSKVVVVVGEVfPDGVVNVLGVGSCPSKGIDRGS ITDLDAVVGSIQRAIEAAESMADCQIM-SVTLAITGEHIQSLNESGFVPI AES--EVTQEEIDSALHTASSIKLPEGLSLLHVIPQEYAVDRQMNIKNPL GLQGVRLKAQVHLIACHQDWQNNLKKAVERCGLQVDKVVFSGFAATHSVL TEDEKDLGVCLIDFGAGTMNVMVYTNGALRFSKVIPYAGNIVTNDIAHAC TISRAEAERIKVNYASAFYPARlhGDKKIEVASIGGRAPRSLTKSDLSLI TSARYTELLGVVKDELDKLKAELEAKHiKFELIAGVVITGGGAQIEDLKE CASNVFHCQVRIASPL-----NITGLTDYVNRPQYSTVVGLLQYNYSNSD DDLISGSDdsegTFFESIWQGVKKIVNkvrsef >gi|3122114|sp|O30994|FTSA_RHIME_17:442 CELL DIVISION PROTEIN FTSAgi|2465468|gb|AAC45823.1| (AF024660) cell division protein [Sinorhizobium meliloti] mslfgsanfglprlkp-LPSKRSHVVSVLDIGSTKVVCMIgrltpraesq iLPGRTHSIEVIGIGHQKSRGVKNGVIADLDAVESVVRLAVDAAERMAGL TID-SLIVNVSAGRLQSDVYTATIDLGGQ--EVEANDLKKVLAAAGHQSL RTDRAILHSLPTGFSLDGERGIRDPLAMFGDVLGVDMHVLTAERPALKNL ELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMGGGTTTISVF AEGKLVHADAVGLGGHHVTTDLARGLSTRIEDAERLKVVHGSALPNSAdE RDIISVPPIGEDdrdQPTHVPRALVSRIVRARIEETLELIRDRIQRSGFS ------PIVGKRIVLTGGASQLTGLPEAARRILARNVRIGRPL-----GV SGLPAAAKGPAFSTAVGLMIYPQVADLETHaagsgmfsTLGGNSRFARMG QWLKESF- >gi|3122103|sp|O07672|FTSA_ENTHR_1:382 CELL DIVISION PROTEIN FTSAgi|2222676|emb|CAA74237.1| (Y13922) ftsA [Enterococcus hirae] M---AKTGMYVGLDIGTTSVKVVVAEYIDSQMNIIGVGNAKSEGINRGII VDIDKTVQAIQRAVRQAEEKAGIQIK-GVSVGLPANLLEVENCQGMIAVN GDSKEITDEDVRNVASAALVRSIPPERQIVSILPQDFTVDGFEGIKDPRG MIGVRLEMYGLLFTGPKTIVHNIRKCVENAGLVVNELVITPLALTETILS DGEKDFGTIVIDMGGGQTTTAVMHDKQLKFTSLDQEGGEFVTKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGQSEPVKVDERYLSEVIS ARMEQIFNKAKEALDQIEA-------LELPGGIVLTGGAASLPGVVDLAQ EIFGVNVKL------YVPNQMGL----RNPVFTNVISIVDY--------- ---SAN-LSEVYQLAK----iavtgetvvahhttveqevtsydndsydap eetvydepeqkksdedvttk >gi|7494626|pir||T34037_27:424 heat shock 70K protein D - Caenorhabditis elegansgi|1947139|gb|AAC71123.1| (AF000264) C. elegans HSP-4, heat shock 70 KD protein D (SW:P20163) [Caenorhabditis elegans] mkvfsliliafvanaycdegasteke----EKMGTIIGIDLGTTYSCVGV F--KNGRVEIIandqGNRITPSYVAFsgdqgERLIGDAAKNQLTINpeNT IFDAKRLIGRFYNeKTVQQDIKHWPFKIVDksnkPNVEVKVGSETKQFTP EEVSAMVLTKMKQIAESYL---------------------------GHEV KNAVVTVPAYFNDAQKQATKDagsiAGLNVVRIINEPTAAAIAYGLDKkD GERNILVFDLGGGTFDVSLltIDSGVFEvlaTNGDTHLGGEDFDQRVMEY FIKLYKkksgkdlrkdnravqklrrEVEKAKRALSTQHQT---KIEIESL FDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDADMKKTDVHE---- --IVLVGGSTRIPKVQQLIKDYF----------NGKEPSRG------INP DEAVAYGAAVQAGVIGGVEN-------TGDVVLLDVNPL-tlgietvggv mtkligrntviptkksqvfstaadsqsavsiviyegerpm >gi|121567|sp|P11021|GR78_HUMAN_23:412 78 KD GLUCOSE-REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN) (BIP)gi|87528|pir||A29821 dnaK-type molecular chaperone HSPA5 precursor - humangi|386758|gb|AAA52614.1| (M19645) GRP78 precursor [Homo sapiens]gi|1143492|emb|CAA61201.1| (X87949) BiP [Homo sapiens] mklslvaamllllsaaraeeed--KKEDVGTVVGIDLGTTYSCVGVF--K NGRVEIIandqGNRITPSYVAFtpegERLIGDAAKNQLTSNpeNTVFDAK RLIGRTWNdPSVQQDIKFLPFKVVEkktkPYIQVDIgGGQTKTFAPEEIS AMVLTKMKETAEAYL---------------------------GKKVTHAV VTVPAYFNDAQRQATKDagtiAGLNVMRIINEPTAAAIAYGLDKrEGEKN ILVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEHFIKL YKkktgkdvrkdnravqklrrEVEKAK-ALSSQHQA---RIEIESFYEGE DFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDE------IV LVGGSTRIPKIQQLVKEFF----------NGKEPSRG------INPDEAV AYGAAVQAGVLSGDQDTGD-----------------lvllhvcpltlgie tvggvmtklipsntvvptknsqifstasdnqptvti >gi|7471223|pir||D75494_1:382 cell division protein FtsA - Deinococcus radiodurans (strain R1)gi|6458332|gb|AAF10210.1|AE001921_2 (AE001921) cell division protein FtsA [Deinococcus radiodurans] M---RENSIIVGLDIGTTKITTVIGEVaPDGTIDIIGEGSVPSEGMKRGS VINLERATQAIKQSLHAAERVSGVRAW-NVFVSVGGNHTKAMTSHGLAAI RRQQ-EISPPDVERAIENARAVPLDPSLEILHTIPQEYVVDGQEGIKNPV GMHGVRLEVDVHIVAGSAGPLLNLRRCVQEAGLQIEGFVLHSLASGLATL DHSEQNQTTVVVDMGGGTTDIGVFKRGNLAHSASIPIGGDHVTADLAQIL KIPMEEAEKVKRHYGAAIPELAdQELTLEITTA-SGATHAISAYELSRVI RPRVSEIYGLIRDEIDQA-LGPVELVA----QSVVLTGGGAQLPGAVDLA RERFRLPTRLGRPR-----GIHGLSDIVGDPAHACSVGMVLYGITQDG-- ---------------------rvpsglddggdpagyteyagrhdqgypqg gypapgyltaptggthvapqg >gi|3426021|dbj|BAA32395.1|_28:424 (AB016836) heat shock 70 kD protein cognate [Bombyx mori] mvkmrwslfalvlvvpavcaddkkekd----KDIGTVIGIDLGTTYSCVG VY--KNGRVEIIandqGNRITPSYVAFtqdgERLIGDAAKNQLTTNpeNT VFDAKRLIGREWSdQTVQHDVKFFPFKVVEknskPHVQVQTSQGDKVFAP EEISAMVLTKMKETAEAYL---------------------------GKKV THAVVTVPAYFNDAQRQATKDagtiSGLNVMRIINEPTAAAIAYGLDKkE GEKNVLVFDLGGGTFDVSLltIDNGVFEvvaTNGDTHLGGEDFDQRVMEH FIKLYKkkkgkdirkdnravqklrrEVEKAKRALSSSHQV---KIEIESF FEGDDSSETLTRAKFEELNMDLFRSTLKPVQKVLEDADMNKKDVDE---- --IVLVGGSTRIPKVQQLVKEFF----------NGKEPSRG------INP DEAVAYGAAVQAGVLSGEQD-------TDAIVLLDVNPL-tmgietvggv mtkliprntviptkksqifstasdnqhtvtiqvyegerpm >gi|2039364|gb|AAB53051.1|_5:398 (U91560) heat shock protein 70 [Paracoccidioides brasiliensis] mapa----------IGIDLGTTYSCVGIF--RDDRIEIIaneqGNRNTPS FVAFtdtERLIGDAAKNQVAMNpQTVFEAKRLIGRKFAdPEVQADMKHFP FKITDkggnPKIQVEFRGEGKHFTPEGISSMFRRKKREIAESYL------ ---------------------GGTVNNAVVTVPAYFNDSQRQVTKDagli AGLNVLRIINEPTAAAIAYGLDKkaEGERNVLILDLGGGTFDVSLltIEE GIFEvksTAGDTHFGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlr tACERAKRTLSSAAQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFR STMDPVERVLRDAKIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF- ---------NGKEPNKS------INPDEAVAYGAAVQAAILSGDS----T SKSTNEILLLDVAPLSvgietaggvmtplikrnttiptkksetfstfadn qpgvliqvfegerart >gi|4009469|gb|AAC95439.1|_1:373 (AF068901) cell division protein FtsA [Streptococcus pneumoniae] M---AREGFFTGLDIGTSSVKVLVAEQRNGELNVIGVSNAKSKGVKDGII VDIDAAATAIKSAISQAEEKAGISIK-SVNVGLPGNLLQVEPTQGMIPVT SDTKEITDQDVENVVKSALTKSMTPDREVITFIPEEFIVDGFQGIRDPRG MMGVRLEMRGLLYTGPRTILHNLRKTVERAGVQVENVIISPLAMVQSVLN EGEREFGATVIDMGAGQTTVATIRNQELQFTHILQEGGDYVTKDISKVLK TSRKLAEGLKLNYGEAYPPLASKETFQVEVIGEVEAVEVTEAYLSEIISA RIKHILEQIKQELDRRRL-------LDLPGGIVLIGGNAILPGMVELAQE VFGVRVKL------YVPNQVGI----RNPAFAHVISLSEFAGQL------ -------------------tevnllaqgaikgendlshqpisfggmlqkt aqfvqstpvqpapapevep >gi|4433657|gb|AAD20834.1|_10:432 (AF125320) cell division protein FtsA homolog [Bartonella bacilliformis] mflslphgg---WRKTRFLTVLDVGSSKIVCLIaclhpleharhLYGRTH SIEILGFGMQRSCGIKSGVIMDMVAAERSIRLAVDAAEKMAGLVVD-SVI VNFSSSCLKSSFINGTVCLDGH--EVTPYDVRMALADVSRKAFDAEHHIV HTVPAFYALDGNKGIVDPIGMIGKTLGVNVHVVTAETAPLRNLETCINRA HLSVEAMVATPFASGLSVLINDEARLGAACIDLGGGTTTLSVFSEGKFVH TDVLPVGGHHVTLDVARGFSMSIEEAERLKIVYGSTFSMSAdDRCMINVL EIGNGHHETeYPRAVLGRIIRARVEEILEMMRDRLNRSGFG------HII GKRVILTGGASQLTGLPEMARNILGRNVRIGRPL-----GISRLPSFAKG ATFSSAVGLLIYPQLVGFEKKTVQTAvkylstgrgKYFQRVGQWLRKTF- >gi|1708306|sp|Q10265|HS71_SCHPO_5:398 PROBABLE HEAT SHOCK PROTEIN C13G7.02Cgi|2130224|pir||S67431 dnaK-type molecular chaperone SPAC13G7.02c - fission yeast (Schizosaccharomyces pombe)gi|7490622|pir||T37652 heat shock protein 70 - fission yeast (Schizosaccharomyces pombe)gi|1204169|emb|CAA93590.1| (Z69729) heat shock protein 70 [Schizosaccharomyces pombe] msks----------IGIDLGTTYSCVGHF--SNNRVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVAMNphNTIFDAKRLIGRRFNdPEVQSDMKHW PFKVIEkdgkPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFL----- ----------------------GGKVTDAVVTVPAYFNDSQRQATKDagl iAGLNVLRIINEPTAAAIAYGLDRsnQHETNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDSRLVNHFAQEFKrknkkditgnaravrrl rtACERAKRTLSSSAQA---SIEIDSLYEGIDFYTSITRARFEELCADLF RNTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPRIQKLVSDFF ----------NGKEPCKS------INPDEAVAYGAAVQAAILVGDT---- -SEKTQDLLLLDVAPLSlgietaggvmtplikrnttiptkksevfstyad nqpgvliqvfegerart >gi|3323502|gb|AAC26629.1|_7:402 (AF045559) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850197|gb|AAC72001.1|_7:402 (U85648) heat shock protein 70 [Toxoplasma gondii]gi|4099058|gb|AAD09230.1| (U82281) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|3850199|gb|AAC72002.1|_7:402 (U85649) heat shock protein 70 [Toxoplasma gondii] madspa----------VGIDLGTTYSCVGVW--KNDAVEIIandqGNRTT PSYVAFtdtERLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMK HWPFKVIAgpgdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL-- -------------------------GKEVKEAVITVPAYFNDSQRQATKD agtiAGLSVLRIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLl tIEDGIFEvkaTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsra lrrlrtQCERTKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELC MDYFRNSLLPVEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLI TDFF----------NGKEPCRS------INPDEAVAYGAAVQAAILKGVT -----SSQVQDLLLLDVAPLSlgletaggvmtkliernttiptkksqtft tyadnqpgvliqvyegeramt >gi|7462793|pir||G72328_1:419 hypothetical protein TM0835 - Thermotoga maritima (strain MSB8)gi|4981367|gb|AAD35917.1|AE001750_11 (AE001750) cell division protein FtsA, putative [Thermotoga maritima] MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >gi|3004463|emb|CAA04673.1|_8:401 (AJ001312) heat shock protein 70 [Tilapia mossambica] mqlkgva----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRT TPSYVAFtdtERLIGDAAKNQVALNpsNTVFDAKRLIGRKFDePVVQADM KHWPFKVISdggkPKIRVEYKGEDKAFYPEEISSMVLVKMKEIAEAYL-- -------------------------GQKVSNAVITVPAYFNDSQRQATKD agviAGLNVLRIINEPTAAAIAYGLDKgkSGERNVLIFDLGGGTFDVSIl tIEDGIFEvksTAGDTHLGGEDFDNRMVNHFVEEFKrkhkkdisqnkral rrlrtAFERAKRTLSSSSQA---SIEIDSLFEGVDFYTSITRARFEELCS DLFRGTLEPVEKSLRDAKLDKGQIHD------VVLVGGSTRIPKIQKLLQ DFF----------NGRELNKS------INPDEAVAYGAAVQAAILSGDT- ----SGNVQDLLLLDVAPLSlgietaggvmtalikrnttiptkqtqtftt ysdnqpgvliqvyegeramt >gi|1929868|gb|AAB58248.1|_33:428 (L46790) endoplasmic reticulum HSP70 homolog; grp78 [Pneumocystis carinii f. sp. carinii] mnkiqkkvvkhyfwivllllfalprsgrsqke----ESYGAVIGIDLGTT YSCVGVM--QSGRVEILpndqGNRITPSYVAFtneERLVGDAAKNQAPAN plNTIFDVKRLIGRRFDeADVQSDIKNFPFKVNHhegkPHVEVNIAGEKK TFTPEEISAMVLRKMKEIAESYL--------------------------- GRTVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGL DKkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQ VMAHFKTLFHqkhgvrldsdpkalgklkrEVEKAKRTLSSQMSA---RVE IESLYQGIDFSETLTRAKFEEINMHLFKKTMKPVEQVLKDGNVKKSDIDD ------IVLVGGSTRIPKVQQLLEEFF----------DGKKVSKS----- -INPDEAVAYGATVQGGILSHEEG-------VEDIVLVDVNPL-tlgiet tggvmtkliarntviptrksqifstatdnqavvliqvfegerpl >gi|1945628|emb|CAA72797.1|_5:396 (Y12079) heat shock protein 70 [Cryptococcus curvatus] mska----------IGIDLGTTYSCVAVW--QQDRVEIIandqGNRTTPS YVAFtdsERLIGDAAKNQVAMNpyNTVFDAKRLIGRKFEdAEVQSDMKHW PFKVISrlaSLHQVEYaRGE--EFSPEEISSMVLIKMKETAEAYL----- ----------------------GGTVSKAVVTVPAYFNDSQRQATKDagt iAGLEVLRIINEPTAAAIAYGLDKksEGEKNVLIFDLGGGTFDVSLltIE EGIFEvkaTAGDTHLGGEDFDNRLVNHFVQEFKrknkkditsnaralrrl rtACERAKRTLSSAAQT---SIEIDSLYDGIDFYTSITRARFEELCQDLF RSTMEPVEKVLRDSKIDKSSVNE------IVLVGGSTRIPKIQKLVSDMF ----------SGREPNRS------INPDEAVAYGAAVQASILNGET---- -SEATQDLLLLDVAPLSlgietaggimtplikrnttvptkkseifstyad nqpgvliqvyegerakt >gi|2529289|gb|AAB95297.1|_10:404 (L44127) heat shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggsmtplikrsttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|2827905|gb|AAB99911.1|_10:404 (AF025477) heat-shock protein 70 [Biomphalaria glabrata] msgrnkapa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGN RTTPSYVAFtdtERLVGDAAKNQAAMNpsNTVYDAKRLIGRKFDdKTVQN DMKHWPFKVVEvdgrPKIQAEYRGENKLFAPEEISSMVLTKMKETAEAYL ---------------------------GQKITDSVITVPAYFNDSQRQAT KDagaiAGLNVLRIINEPTAAALAYGLDKghKGEKNVLIFDLGGGTFDVS IltIDEGSMFevkaTAGDTHLGGEDFDNRMVTHFVQEFKrkynkdmssnp rairrlqtACERAKRTLSSSSEA---SIEIDSLYEGIDFYTKITRARFEE LCGDLFRSTLQPVETALRDAKLDKGKIDE------VVLVGGSTRIPKVQK LLTDFF----------NGKELNKS------INPDEAVAYGAAVQAAVLTG DT-----SDTIKDVLLVDVAPLSlgietaggvmtplvkrgttiptktsqi fttyvdnqpgvdiqvyegeramt >gi|6322426|ref|NP_012500.1|KAR2_45:442 Homologue of mammalian BiP (GPR78) protein; member of the HSP70 gene family; Kar2pgi|121575|sp|P16474|GR78_YEAST 78 KD GLUCOSE-REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN HEAVY CHAIN BINDING PROTEIN HOMOLOG) (BIP)gi|72216|pir||HHBYK2 dnaK-type molecular chaperone KAR2 precursor - yeast (Saccharomyces cerevisiae)gi|171130|gb|AAA34454.1| (M31006) glucose regulated protein 78 precursor [Saccharomyces cerevisiae]gi|171771|gb|AAA34713.1| (M25394) protein-folding protein (KAR2) precursor [Saccharomyces cerevisiae]gi|171773|gb|AAA34714.1| (M25064) KAR2 protein precursor [Saccharomyces cerevisiae]gi|1008157|emb|CAA89325.1| (Z49309) ORF YJL034w [Saccharomyces cerevisiae] mffnrlsagkllvplsvvlyalfvvilplqnsfhssnvlvrgad--DVEN YGTVIGIDLGTTYSCVAVM--KNGKTEILaneqGNRITPSYVAFtddERL IGDAAKNQVAANpqNTIFDIKRLIGLKYNdRSVQKDIKHLPFNVVNkdgk PAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYL--------------- ------------GTKVTHAVVTVPAYFNDAQRQATKDagtiAGLNVLRIV NEPTAAAIAYGLDKsDKEHQIIVYDLGGGTFDVSLlsIENGVFEvqaTSG DTHLGGEDFDYKIVRQLIKAFKkkhgidvsdnnkalaklkrEAEKAKRAL SSQMST---RIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVL QDSGLEKKDVDD------IVLVGGSTRIPKVQQLLESYF----------D GKKASKG------INPDEAVAYGAAVQAGVLSGEEG-------VEDIVLL DVNAL-tlgiettggvmtplikrntaiptkksqifstavdnqptvmikvy egeram >gi|4138103|emb|CAA75615.1|_1:370 (Y15422) cell division protein FtsA [Lactococcus lactis subsp. cremoris] M---AKSGLYTGVDIGTNTIKVLVAEYVSGEMNIIGVGNAKSDGLKNGII VDIEKVAQALRKAVNAAEERAGITID-RINVSIPANSLEMEPCQGMVPIV SDTKEITDNDVIQVVQNALMRGIVPEREIIAVETKEFTVDGFTGISDPRG MFGVRLEIRGVVYTGPKTLVHNVRKVVERAGLLVDNIVIAPLAMRQYVLT EGEREFGTIMVDLGAGQTTVSIVKDQSLKFTHTSPEGGDYVTKDISTVLN TSVSAAEDLKVNYGEASTERAsQDEYFLVDVVGKDEPEQITEYYLSQIIE ARMTQVFNRVRQDLEHGHT-------SETPGGLILVGGTAAMPGVVDLAT KILGMNARL------YVPGEMGL----RNPAFAQVISVVNY--------- --------------------igsrsdidvlvsqafsgdyaytaaeetyva pvqtiapqvttvadvendfy >gi|5834365|gb|AAD53931.1|AF179611_15_1:418 (AF179611) cell division protein FtsA [Zymomonas mobilis] MTPVKEGNLITALDIGSSKISALIVEKrADNVLQVLGSGQRESLGVRRGY LFDMESTEKAVREAVEQAERIAGTNIE-SVWVSFSAGGLISDLSSTEVAL NGQ--RIEEIHMETLLATGRDAIDPDGHMVLHAQPALYTLDGLKGVKSPI GLYADRLGVDIHVIAAEPSPVRYLELAVRSAHLEVQAIVAAPIAAGMSCL FAEERELGVALVELGAGVTNVSLFAGGLLVGLTSIPMGASDITDDIAAAF GTRRSDAERLKCFYGSAQSSPRdNHEMIDVAPIANDedviDPQRISRAQL IGVIRKRLDHWMDHIADALKSLGYN------GPVGRQVVLTGGGAELKGI ADYAQGVLGRSVRIGRPH-----GLVGLPDAHSGPAFATLTGLVLHAASE PFDLRPLSYNnrigsqksfmGSFKRLFQMFRR---ey >gi|7443772|pir||G71331_1:414 probable cell division protein (ftsA) - syphilis spirochetegi|3322667|gb|AAC65373.1| (AE001217) cell division protein (ftsA) [Treponema pallidum] M-----GEVIVGLDIGTESIRAVVAERlEGGALQVVGVGVGHSKGLRRGV VVNIENTVVGIHHAVEAAEMMSGIEVA-HCVVGLGGTHIEGRNLKGVVAV adkGKGHREVDQSDIDRVLEVACAVSLPPDRKILHVIPKVYSVDDQHGIT DPRNIIGVRLEGEVHMITGSATCMRSVIDCVKRANLHIDFLMHNGLAAVR SVLNDDERNVGCVLINIGGGTTDVIAMYKGSPVLITSIPVGGSQVTSDLA KVKNLPLETAERIKIKDGCCWIPLLeGEGSVLISSQGNRIPVEISKREIA EIIEARMCEVFTIVRDRLSTVETQ----SGRGIIENIILCGGGAQLTGAV ELASAIFDTPrVHLGIPG-----TLGGLAGEYRSPEFAVVLGLILEYTHK QGQRAyqgraEMERAGVFTKVKDIWRNLF- >gi|7465360|pir||C71873_1:442 septum formation protein - Helicobacter pylori (strain J99)gi|4155486|gb|AAD06487.1| (AE001520) septum formation protein [Helicobacter pylori J99] M---EHKEIVIGVDIGSRKICAIVAEFKDGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpissfresyhpKTK AIVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINNACaKAGLDNDK HILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIM IQSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNS IRYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFESGaetPSQ SVQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGFE--- ---EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLATPV--EKYNIMG MFEDLKDPRFSVVVGLILYkaGGHTNYERDskgiirYHESDDYIRKAHQS NPTPH-ihsspternlsdlktpsaplntaknddflpikpteqkgffqnll dkiski >gi|1708633|gb|AAB38076.1|_32:427 (U40994) PrBiP precursor [Pneumocystis carinii f. sp. ratti] miiiriflyklffwlnflifvlprygwaqke----ESYGTVIGIDLGTTY SCVGVM--QSGRVEILandqGNRITPSYVAFtndERLVGDAAKNQAPANp lNTIFDVKRLIGRRFDdVDVQADMKHWPFKVHHqdgkPHVIVNIAGEKKT FTPEEISAMVLRKMKEIAESYL---------------------------G RTVTHAVVAVPAYFNDAQRQATKDagtiAGLNVLRIVNEPTAAAIAYGLD KkEGERLIIVYDLGGGTFDVSLlsIEDGVFEviaTAGDTHLGGEDFDHQV MSYFKTIFHqkngvrldddpkalgklkrEVEKAKRILSSQMSA---RVDI ESLYQGIDFSETLTRPKFEEINMHLSKKTMKPVEQVLKDGNVKKSDIDD- -----IVLVGGSTRIPKVQQLLEDYF----------DGKKVSKS------ INPAEAVAYGATVQAGILSLEEG-------VEDIVLVDVNPL-tlgiett ggvmtkliarntviptrksqifspasdnqavvliqvfegerpl >gi|7443771|pir||D70347_6:413 cell division protein FtsA - Aquifex aeolicusgi|2983169|gb|AAC06770.1| (AE000694) cell division protein FtsA [Aquifex aeolicus] mkrla-----------ALDIGSQKTVFVIGERdSYGDIHIIGFGEVPSRG IVKGVINDLSEAKGSILRAMKEAEAMAGLKVR-EVVYNVSGGTTKngtvk SQNVKDTISISTKSSEIEESHIQRLHERCLMKAKEEGYEIVYTAPRKYIL DDHTEVKNPLGLVGSKLSVEMHVVKVSTTILRNLEKAIREVGLNPVGRTV NAIASADSVLTHDEKEDGVLLLDMGAGLTDYSLYTEGRPYITGVVPFGGI NITKDLSYMLKIDTETAESVKVNHGVAFESLVdDEDVVKIKPRGEDREIP IQKKQVAEIIQSRVEEIVEKVFKEIKARGV-PL----NQINSGIVVTGGT ANLKGIRELIEHMTGLPVRIGLPQ-----GIVGLREKIENPKYATVCGLL RQAFVSGTIDItestNSNTGNFFKNLSERFKKWFEell >gi|3122110|sp|O25629|FTSA_HELPY_1:441 CELL DIVISION PROTEIN FTSAgi|7463911|pir||B64642 cell division protein - Helicobacter pylori (strain 26695)gi|2314120|gb|AAD08024.1| (AE000606) cell division protein (ftsA) protein [Helicobacter pylori 26695] M---EHKEIVIGVDLGSRKICAIVAEFKEGILRIIGTahqdsKEINSKAI KRGRINSLAHASNAIKEVINSAKKMAGLNAdedrnnpmphfgeyhpKTKA IVSFSGAYTESIRDVTGVASTKDN-VVTIDEINRAINSACaKAGLDNDKH ILHALPYRFTLDKQE-VNDPLGMSGTRLEVFIHIVYTEKNNIENLEKIMI QSGVEIENIVINSYAASIATLSNDERELGVACVDMGGETCNLTIYSGNSI RYNKYLPVGSHHLTTDLSHMLNTPFPYAEEVKIKYGDLSFEGGeetPSQN VQIPTTGSDGHEShiVPLSEIQTIMRERALETFKIIHRSIQDSGLE---- --EHLGGGVVLTGGMALMKGIKELARTHFTnYPVRLAAPV--EKYNIMGM FEDLKDPRFSVVVGLILYkaGGHTNYERDskgvirYHESDDYTRTAHQSS PTPH-ihsspternlsdlkapsaplntaknddflpikpteqkgffksfld kiskf >gi|7495875|pir||T19211_7:401 hypothetical protein C12C8.1 - Caenorhabditis elegansgi|3874268|emb|CAB03871.1| (Z81467) predicted using Genefinder; Similarity to heat shock protein 70's; cDNA EST EMBL:D64554 comes from this gene; cDNA EST EMBL:D67599 comes from this gene; cDNA EST EMBL:C13707 comes from this gene; cDNA EST yk395h8.3 comes from this gene; cDNA E> mstcka----------IGIDLGTTYSCVGIY--QNGKVEILanseGNKTT PSYVAFtdtERLVGDAAKDQAARNpeNTVFDAKRLIGRRFDeETVQSDIK HWPFTVKGkqgkPVVEVEVKGEKREFNAEEISAMVLQKMKETAEAVL--- ------------------------GHSVRDAVITVPAYFNDSQRQATKDa atiAGLNAIRIINEPTAAALAYGLDKgiTDEKNILIFDLGGGTFDVSIls IAEGSIFevksTAGDTHLGGEDFDSRVLQHFMTEFKrktgkdissnprai rrlrtACERAKRTLSSSTEA---TVEVDSLFDGTDFYSKITRARFEELCA DLFRKTLEPVEKALRDAKTDKGRIDE------VVLVGGSTRIPKIQKLLK EFF----------NGKDLNCS------INPDEAVAFGAAVQAAVLSGVK- ----DDTIKDVLLVDVVPLShgietaggvmtnlidrntripakasktftt yadnqpgvsiqvyegeramt >gi|3122101|sp|O07111|FTSA_ENTFA_1:369 CELL DIVISION PROTEIN FTSAgi|2149908|gb|AAC45638.1| (U94707) cell division protein [Enterococcus faecalis] -------------------------------MNIIGVGNAKSDGLNRGIV VDIDQTVQAIQRAVRQAEEKAGIQIK-SVNVGLPANLLEVESCQGMIAVS SESKEITDEDVCNVASAALVRSTPPERQIVAILPQDFTVDGFEGIKDPRG MLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGINELVITPLALTETILT DGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKDISIVLN TSFNNAEALKINYGDAYPERTsANEEFPVDVIGKSEPVRVDERYLSEIIE ARVEQILRKSKEVLDEIDA-------FELPGGVVLTGGAASIARYCRFRR KRFLeANVKL------YVPNHMGL----RNPVFANVISIVEYSAQLNDIY HiakyaiPGEKSKPAQSV---------avqqevrydtyaeqpqeeyeefn eresgekvtgkikdffsnifd >gi|311895|emb|CAA48873.1|_30:418 (X69121) heat shock protein [Plasmodium falciparum] mkqirpyilllivsllkfisavdsniegp---------VIGIDLGTTYSC VGVF--KNGRVEILnnelGNRITPSYVSFvdgERKVGEAAKLEATLHptQ TVFDVKRLIGRKFDdQEVVKDRSLLPYEIVNnqgkPNIKVQIKDKDTTFA PEQISAMVLEKMKEIAQSFL---------------------------GKP VKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAALAYGLDKK EETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDFDQRVMDY FIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST---QIEIEDI LEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSKIDE---- --IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG------INP DEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlgietvggi mtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|6968152|emb|CAB72969.1|_1:407 (AL139076) cell division protein ftsA [Campylobacter jejuni] M-----ILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGAI TNIELASKSIEEAVRSAEMMSGVHYD-RVVVSISGAYTKSVDSIGVVNIP NH--EIGIKEIHRAVSTAKhTANLPSGYEIIHVLPYNFKVNDLEHVDDPL GMSGNRLEVSTHIVISQESHIKNLKKAVELADLRVDNIVLSGYASAIACL DDSEKELGAVLIDMGGAICDMVVHTGNSIRYNDCLQIGSINITQDLSMAL HTPLKEAEKIKLNYAALSQQP--NTLIQIPSMGDERKVNeVSLDIISNVI YARAEETLMILAKILSDNRYA------NAIGGGVVLTGGMTKLAGIDELA PATFDnRSVRLA---TARKDLITGFSEIFNDPENTCAIGLCLYgaGYFTP YELDsneKLRYKGEIENFNRQIKQDI-vlqkdaeseiksdffdenlqend tiaiqeqldfkepkekkpsvfsniwhk >gi|5738968|dbj|BAA83426.1|_1:366 (AB031071) heat shock protein 70 [Toxoplasma gondii] --------------------------------------TTPSYVAFtdtE RLVGDAAKNQVARNpeNTIFDAKRLIGRKFDdPSVQSDMKHWPFKVIAgp gdkPLIEVTYQGEKKTFHPEEVSAMVLGKMKEIAEAYL------------ ---------------GKEVKEAVITVPAYFNDSQRQATKDagtiAGLSVL RIINEPTAAAIAYGLDKkgCGEMNVLIFDMGGGTFDVSLltIEDGIFEvk aTAGDTHLGGEDFDNRLVDFCVQDFKrknrgkdistnsralrrlrtQCER TKRTLSSSTQA---TIEIDSLFEGIDYSVSISRARFEELCMDYFRNSLLP VEKVLKDSGIDKRSVSE------VVLVGGSTRIPKIQQLITDFF------ ----NGKEPCRS------INPDEAVAYGAAVQAAILKGVT-----SSQVQ DLLLLDVAPLSlgletaggvmtkliernttiptkksqtfttyadnqpgvl iqvyegeramt >gi|7467594|pir||G71679_3:411 cell division protein ftsa (ftsA) RP251 - Rickettsia prowazekiigi|3860813|emb|CAA14713.1| (AJ235271) CELL DIVISION PROTEIN FTSA (ftsA) [Rickettsia prowazekii] mk----EKISNFVTFDFGSSKIAVIAAYIsKKGEIKVASQNLHHSKGIKS GVILDLKNAETSILTAIYALEKDCGKNIN-KIILSLSGAETKSYYINYTI KINGQ--TVTQQDIKKLLQKALVEFKFKNQEIIHYFPLEFTLDNNS-VEN PIGMYGRALSCELHIISARSNLLSNIVQCFAKCHVEVTNITLAIYASAIS CLTNDEKNLGVLIIDIGDQTTSCGIFFADKLIYTWHLNIGSFHISLDIAK VFGIDLVTAEKLKILYGNAIIPLFeKDSIINMDDFHVDIPHNlnisLTIY RLAEVISARAEEILSMVKAEYDKATKGQFEVFR------VVITGGGSQLR GLKELSNKIFAKQSRIGKPE-----IIAGFTEDYNPAMYSAAIGMLKIHA LKQQKALshirLDENINFFKKAFDWFKENI- >gi|2921217|gb|AAC05357.1|_2:368 (AF026512) heat-shock protein Hsp70 [Beroe ovata] n-------------------------------------RTTPSYVAFndt ERLIGDPAKNQVAMNptNTIFDAKRLIGRKFTdSIVQSDMKLWPFDVVDe sgrPKIKVTHQCKDKTFFAEEISSMVLGKMKETAEAYL------------ ---------------GKTVNDAVITVPAYFNDSQRQATKDagviARINVL RIINEPIAAAIAYGLDKkgntQGERNVLIFDLGGGTFDVSIlsIEDGIFE vksTNGDTHLGGEDFDNRMVNHFKDEFRrehkmdmsnnkrslrrlrtACE RAKRTLSSSAQA---SIEIDALYEGIDFYTTLTKPRFEELNNDLFKKTTE CVEKAVRDAKMEKGEIHE------IVLVGGSTRIPKIQKLLEDFF----- -----KGKSLNKS------INPDEAVAYGAAVQAAILSGDK-----SEEV QDLLLLDVAPLSlgietaggvmtslikrnatiptkqsqkfttyadnqpgv liqvfegeramt >gi|3122010|sp|P94317|DNAK_BRAJA_4:393 DNAK PROTEIN (HEAT SHOCK PROTEIN 70) (HSP70) mgk---------VIGIDLGTTNSCVAVM--DGKNAKVIenseGMRTTPSI VAVtddgERLVGQPAKRQAVTNpeRTFFAVKRLIGRRYDdPMVEKDkklV PYKIVKASNGDAWVEADGQ--TYSPSQVSAFILQKMKETAEAHL------ ---------------------GQKVDQAVITVPAYFNDAQRQATKDagki AGLEVLRIINEPTAAALAYGLDKTKTGTIAVYDLGGGTFDISIleIGDGV FEvksTNGDTFLGGEDFDMRLVGYLADEFQkeqginlrndklalqrlkeA AEKAKIELSSTT-----QTEINLPFITADqtGPKHltmkLTRAKFEALVD DLIQKTVEPCRKALKDAGVTAGEIGE------VVLVGGMSRMPKVQEVVK QLF-----------GKEPHKG------VNPDEVVAIGAAIQAGVLQGD-- -------VKDVLLLDVTPLSlgietlggvftriidrnttiptkksqvfst aednqnavtirvfqgerema >gi|5805059|emb|CAB53636.1|_4:409 (AJ249201) cell division protein [Prevotella albensis] mpk-------EFIVAIELGSSKMTGIAGQKnLDGSISVLSIvEEDSTSCI RKGVVYNIEKTGQCLTSIMQKLKNNLKQDIT-HVYVGVGGQSIRSVKNVI VKDLPSAT-QVTQEMVNELMDANRNMSYP-DLEILDAATQEYKLDNQF-Q LDPVGIQCTHLEGNFLNILWRKNFYRNLNTCFDNAGIAIAEMYLAPLALA DSTLTDAEKRSGCVLIDLGADTTTVSVYYKNILRHLAVIPLGGSNITKDI A-SLQMEDSDAEKMKIKYASAFTE---NNEIDNtLSYSIDADRQIESRKF IEIVEGRVEEI-------IENAWFQVPNEYADKLLGGIILTGGGSNMPNI EKAFRSHTHiEKIRIAKFVtqaiNSKDPKITEHDGKLNTILGLLAKGDMN CAGGELHDDLFTQSEqkpTTTADIHQKPRDL--kettgtgvvmtaaekqk aeeearkkkeeeeeiarveaeklemeeaarrke >gi|1236795|gb|AAA93010.1|_1:286 (U25190) PBGRP [Plasmodium berghei] -------------------------------------------------- -------------------------------------------------- DKDTTFAPEQISAMVLEKMKEIAQSFL----------------------- ----GKPVKNAVVTVPAYFNDAQRQATKDagtiAGLNIVRIINEPTAAAL AYGLDKKEETSILVYDLGGGTFDVSIlvIDNGVFEvyaTAGNTHLGGEDF DQRVMDYFIKMFKkknnidlrtdkraiqklrkEVEIAKRNLSVVHST--- QIEIEDIVEGHNFSETLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSK IDE------IVLVGGSTRIPKIQQIIKEFF----------NGKEPNRG-- ----INPDEAVAYGAAIQAGIILGEE--------LQDVVLLDVTPL-tlg ietvggimtqlikrntviptkksqtfstyqdnqpavliqvfegeral >gi|436763|dbj|BAA02189.1|_1:316 (D12692) heat shock protein [Theileria sergenti] -------------------------------------------------- --------------------------------MKHWPFKVTNgpngkPNI EVTFQGERKTFHAEEISSMVLTKMKEIAEAFI------------------ ---------GKTVKDVVITVPAYFNDSQRQATKDagtiAGLNVMRIINEP TAAAIAYGLDKksGGEKNVLIFDLGGGTFDVSIltIEDGIFEvkaTAGDT HLGGEDFDNLLVEHCVRDFMrlnngknlssnkralrrlrtHCERAKRVLS SSTQA---TIELDSLYEGIDYNTTISRARFEELCNEKFRSTLVPVEKALE SSGLDKRSIHE------VVLVGGSTRIPKIQSLIKSFF----------NG KEPCRS------INPDEAVAYGAAVQAAILSGNQ-----SEKIQELLLLD VAPLSlgletaggvmtvlikrnttiptkknqifttnedrqegvliqvfeg eramt >gi|4164594|gb|AAD05564.1|_5:285 (AF111194) heat shock protein 70 [Paracoccidioides brasiliensis] sara---------------------------------------------- -------------------------------------------------- ----------------SMVLTEVRETAESYL------------------- --------GGTVNNAVVTVPAYFNGSQRQATKDagliAGLNVLRIINEPT AAAIAYGLDKkaEGERNVLIFDLGGGTFDVSLltIEEGIFEvksTAGDTH LGGEDFDNRLVNHFVNEFKrkhkkdlssnaralrrlrtACERAKRTLSSA AQT---SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVLRDA KIDKSSVHE------IVLVGGSTRIPRIQKLVSDFF----------NGKE PNKS------INPDEAVAYGAAVQAAILSGDS----TSKSTNEILLLDVA PLSvgietaggvmtplikrnttiptkksetfstfadnqpgvliqvfeger art >gi|3122104|sp|O07827|FTSA_PORGI_4:408 CELL DIVISION PROTEIN FTSAgi|2209034|dbj|BAA20534.1| (AB004555) FtsA [Porphyromonas gingivalis] msrM-----NTIYAVIDLGSWYIRGMVARKmEDGRVSPISFYEEPaNNCI RHGCVHNIDEAAAIIRRIVNQLNENLEDNTHiTSLYVGVGGQSIASQEFI VRKAMVPEGEVIRTEHIESLWAEMRGASFP-DKEVLDVTDPLFYVDGKQE IQ-AKGVFCHELEARFQLITARRSVKQNIRIAIEErLGLRLAGILVTPLC EAQVLLSDDELTLGCCYVNIGAGCTSVSIYKNRLLAMLRVLPMGGYNVTR DLT-SLRLTEQEAENMKLNHVSMINDNKSNGSFRMTFADKFSEREFRSSE VNRLAKARMDEITANYLNILRLSGLL------EDIGAGIILNGGGTKINN YMAAMKKILGevTPAKI----RMDRIDTDNAISFIEG--HISTIGLAYKA TQPCTDYITTNLGELVSQIETKEETPANdtvqdlfaqdrqaerkeneqrd ntdrqredtprqtlkkkektgpsfgd >gi|729993|sp|P39751|MBL_BACSU_1:333 MREB-LIKE PROTEIN (MBL PROTEIN)gi|2120019|pir||I40531 cell shape determining protein mbl - Bacillus subtilisgi|531460|gb|AAA67878.1| (U12962) Mbl protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVPVLVA------- ----------ENPMDCVAIGTGVM----------------LDNMDKLPKR KLS >gi|6983753|emb|CAB75392.1|_5:327 (AL139298) rod shape-determining protein [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigrtpgNIVAVRPLKDGVIADFEITERMLRYFILKIHKR- RYLARPRVVVCVPSGITGVE------------------------------ ------------------------------------------------RR AVIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVA VISLGGIVTAQSIRVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGS AYDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAVKTT LDKC---PPELSGDIMDRGIVLTGGGALLRGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|266568|sp|Q01465|MREB_BACSU_5:331 ROD SHAPE-DETERMINING PROTEIN MREBgi|322181|pir||A45240 rod shape-determining protein envB - Bacillus subtilisgi|143212|gb|AAA22605.1| (M95582) putative [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFARkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|7444226|pir||D69660_5:331 rod shape-determining protein envB - Bacillus subtilisgi|142855|gb|AAA22397.1| (M96343) MreB protein [Bacillus subtilis]gi|2635268|emb|CAB14763.1| (Z99118) cell-shape determining protein [Bacillus subtilis] mfgi------GARDLGIDLGTANTLVFVKGKgiVVREPSVVALqtdtksi vavgndaknmigrtpgNVVALRPMKDGVIADYETTATMMKYYINQAIKNK GMFTRkPYVMVCVPSGITAVE----------------------------- -------------------------------------------------E RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEV AIISLGGIVTSQSIRVAGDEMDDAIINYIRKTYNlmigdrTAEAIKMEIG SAEAPEEsDNMEIRGRDLLTGLPKTieITGKEISNALRDTVSTIVEAVKS TLEKT---PPELAADIMDRGIVLTGGGALLRNLDKVISEETKMPVLIA-- ---------------EDPLDCVAIGTGKA----------------LEHIH L-------fkgktr >gi|417314|sp|P32444|MBL_BACCE_1:332 MREB-LIKE PROTEIN (MBL PROTEIN)gi|484937|pir||PN0441 mreB protein - Bacillus cereusgi|49005|emb|CAA44237.1| (X62374) MREB [Bacillus cereus]gi|4584137|emb|CAB40597.1| (AJ010138) mreB-like protein [Bacillus cereus] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVAIdrntgkvlavg eearsmvgrtpgNIVAIRPLKDGVIADFEITEAMLKYFINKLDVK-SFFS KPRILICCPTNITSVE---------------------------------- --------------------------------------------QKAIRE AAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSM GDIVTSSSIKMAGDKFDMEILNYIKRKYKlligerTSEDIKIKVGTVFPG ARsEELEIRGRDMVTGLPRTitVCSEEITEALKENAAVIVQAAKGVLERT ---PPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIA------- ----------ENPMHCVAVGTGIM----------------LENIDRLPKR AL-r >gi|3122102|sp|O07325|FTSA_STAAU_2:367 CELL DIVISION PROTEIN FTSAgi|2149897|gb|AAC45628.1| (U94706) cell division protein [Staphylococcus aureus] m-----EEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGL IDDFDIARQAIKDTIKKASIASGVDIK-EVFLKLPIIGTEVYDESNEIDF YEDT-EINGSHIEKVLEGIREKNDVQETEVINVFPIRFIVDKENEVSDPK ELIArHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYG-SI LTATEKELGACVIDIGEDVTQVAFYERGELVDADSIEMAGRDITRRYC-- --TRIKalLMKLLKKLNTNMVMHSMILLQIKISSLLNRLIVMkqysIPQK DLSDFIEARVEEIFFEVFDVLQDLGL-------TKVNGGFIVTGGSANLL GVKELLSDMVSEKVRI------HTPSQMGI----RKPEFSSAISTI---- ---------------------------sssiafdelldyvtinyhdneet eedvidvkdkdnesklggfdwfkrktn >gi|7444221|pir||E71826_10:342 rod shape-determining protein - Helicobacter pylori (strain J99)gi|4155891|gb|AAD06861.1| (AE001551) ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLVRDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|2920363|gb|AAC04558.1|_10:342 (U95641) rod shape-determining protein [Helicobacter pylori] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKAHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEsalsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KNQVREISSALRSVLEEV---KPDLVKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444224|pir||E64691_10:342 rod shape-determining protein - Helicobacter pylori (strain 26695)gi|2314543|gb|AAD08416.1| (AE000637) rod shape-determining protein (mreB) [Helicobacter pylori 26695] mifskligl------FSHDIAIDLGTANTIVLVKGQgiIINEPSIVAVrm glfdskaydilavgseakemlgktpnSIRAIRPMKDGVIADYDITAKMIR YFIEKVHKR-KTWIRPRIMVCVPYGLTSVE-------------------- -------------------------------------------------- ------------RNAVKEstlsAGAREVFLIEEPMAAAIGAGLPVKEPQG SLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNlli gerTGEEIKIEIGCAIKLDPpLTMEVSGRDQVSGLLHTieLSSDDVFEAI KDQVREISSALRSVLEEV---KPDLAKDIVQNGVVLTGGGALIKGLDKYL SDMVKLPVYVG-----------------DEPLLAVAKGTGEA-------- --------IQDLDLLSR----vgfse >gi|7444223|pir||E71316_1:326 probable rod shape-determining protein (mreB) - syphilis spirochetegi|3322787|gb|AAC65484.1| (AE001226) rod shape-determining protein (mreB) [Treponema pallidum] MFFLRRFSADVGIDLGTCNTIIYVEGRgiVVNEPSVVAVergtksvvavg sdakrmlwktpgNIVAIRPLKDGVIADMDTTEKMIRYFISKILPR-HRLI KPRMVIGIPSCITDVE---------------------------------- --------------------------------------------CRAVHE SASKAGAGEVEVLEESLAAAIGANIPIEEPAGNMVCDIGGGTTEVSVISL LGMVVTNAIRVGGDEFDQAIIKHVRSVHNliigeqTAERLKIEIGNASPE KNiEKVEVKGTDAITGLPRRleIDSVEVREALKEPITQIVEEIKRTLART ---PPELAADIVERGIVMTGGGSLLKGLPKLISKETHVPVILA------- ----------ENPMNCVAIGAGRYH------------------------- ---evykdisgdrslyaglns >gi|2636166|emb|CAB15658.1|_1:302 (Z99122) MreB-like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELKVP----------- -------------------------------------------------- ---gprcwkilwia >gi|730060|sp|P39763|MREH_BACSU_7:322 MREBH PROTEINgi|7444227|pir||C69660 cell-shape determining protein mreBH - Bacillus subtilisgi|520840|dbj|BAA07047.1| (D37799) mreBH [Bacillus subtilis]gi|2633818|emb|CAB13320.1| (Z99111) cell-shape determining protein [Bacillus subtilis]gi|3282132|gb|AAC24922.1| (AF012285) unknown [Bacillus subtilis] mfqste----------IGIDLGTANILVYSKNKgiILNEPSVVAVdtttk avlaigadaknmigktpgKIVAVRPMKDGVIADYDMTTDLLKHIMKKAAK SIGMSFRkPNVVVCTPSGSTAVE--------------------------- -------------------------------------------------- -RRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTT EVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNlligerTAEQVKME IGHALIEHIpEAMEIRGRDLVTGLPKTimLQSNEIQDAMRESLLHILEAI RATLEDC---PPELSGDIVDRGVILTGGGALLNGIKEWLTEEIVVPVHVA -----------------QNPLESVAIGTGR-------------------- ----------slevidklqkaik >gi|1684654|emb|CAB05381.1|_1:300 (Z82987) MreB like protein [Bacillus subtilis] M-----FARDIGIDLGTANVLIHVKGKgiVLNEPSVVALdknsgkvlavg eearrmvgrtpgNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVK-GLFS KPRMLICCPTNITSVE---------------------------------- --------------------------------------------QKAIKE AAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISM GDIVTSSSIKMAGDKFDMEILNYIKREYKlligerTAEDIKIKVATVFPD ARhEEISIRGRDMVSGLPRTitVNSKEVEEALRESVAVIVQAAKQVLERT ---PPELSADIIDRGVIITGGGALLNGLDQLLAEELK------------- -------------------------------------------------- ---v >gi|2253079|emb|CAA74597.1|_5:326 (Y14206) merB [Streptomyces coelicolor A3(2)] mgnsM---SFIGRDMAVDLGTANTLVYVRGRgiVLNEPSVVAIntntggi lavgaeakkmigarrNIVAVRPLKDGVIADFEITERMLRYFILKIHKR-R YLARPRVVVCVPSGITGVE------------------------------- -----------------------------------------------RRA VIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVAV ISLGGIVTASP-SVAGDELDNAIIQHVKKEYSlllgerTAEQIKITIGSA YDLDSdEHTEIRGRDLVSGLPKTvvISAAEVRKAIEEPVNAIVDAgSRTT LDKC---PPELSGDIMDRGIVLTGGGALLPGLDERLRRETGMPIHIA--- --------------EDPLDSVALGSGKCV--------------------- -------eefealqqvldasprr >gi|6967753|emb|CAB72744.1|_13:339 (AL139074) homolog of E. coli rod shape-determining protein [Campylobacter jejuni] mildqligffss---------DMGIDLGTANTLVLVKDKgiVINEPSVVA VererydskakilavgkeakdmvgktpgNIEAIRPMKDGVIADFDMTEKM IRYFIEKTHRR-KSFLRPRIIISVPYGLTQVE------------------ -------------------------------------------------- --------------RKAVREsalsAGAREVFLIEEPMAAAIGASLPIQEP KGNLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNl iigerTGEEIKITIGSAIQLPKeLSMVVKGRDQVSGLLSRieLTSEDVRE AMREYLKEIADALKMVLEMM---PPDLASDIVENGVVLTGGGALIRGLDK YLSEIVRLPVYIA-----------------DEPLLAVAKGTGKA------ ----------LEEISLL------qqltnee >gi|7444225|pir||B70189_16:347 rod shape-determining protein (mreB-1) homolog - Lyme disease spirochetegi|2688645|gb|AAC67059.1| (AE001171) rod shape-determining protein (mreB-1) [Borrelia burgdorferi] mellwktfrevvlnl---FKSFLIDIGIDLGTCNTLVYIKDYgvVMSEPS VVAIditkgnkvvavgrnakkmlwktpeNIKAVRPLRDGVIADIENTEKM IKYFINQIFSRKKLFFKPRMVIGVPTCITEVE------------------ -------------------------------------------------- --------------RRAVKEsamnAGAREVKVIEESLAAAIGSDIPIFEP TGHMVCDIGGGTTEISVISLGGMVVSRAIRTGGDEFDESIIKYMRNSHNi iigqqTAEKLKIKIGNVYPDIQnlrvEKIDIKGTDAVTGLPRKqlVDSME VRESLQEPINVVVDEVKRTLGAT---PPELATDIVERGIILTGGGALLKG LNRLLSKETGVPVYVA-----------------DNPLLSVAVGAGLFYDY AN------------------------ridiskniysfine >gi|300265|gb|AAB26551.1|_43:346 HSP68=68 kda heat-stress DnaK homolog [Lycopersicon peruvianum=tomatoes, Peptide Mitochondrial Partial, 580 aa] ellvgtpakrqavtnptntlsgtkrligrrfddpqtqkemkm-------- -------------------------------------------------- ------------------------VPYKIVKGSNGDAWVEANGQ--QYSP SQIGAFILTKMKETAEAYL---------------------------GKSI NKAVITVPAYFNDAQRQATKDagriAGLDVQRIINEPTAAALSYGMNS-K EGLVAVFDLGGGTFDVSIleISNGVFEvkaTNGDTFLGGEDFDNALLEFL VSEFKrtegidlskdklalqrlreAAEKAKIELSSTS-----QTDINLPF ITADasgakhLNITLTRSKFETLVNNLIERTRNPCKNCLKDAGVSLKDVD E------VLLVGGMTRVPKVQEIVSEIF-----------GKSPSKG---- --VNPDEAVAMGAALQGGILRGD---------VKELLLLDVTPLSlgiet lggiftrlinrnttiptkksqvfstaadnqtqvgikvlqgerema >gi|7579069|gb|AAF64243.1|AF252299_1_1:252 (AF252299) hsp70 BiP [Entamoeba invadens] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------TVPAYFNDAQRQATKDagkiAGLNVLRILNEPTAAAM AYGLNKvTGEKNILVFDLGGGTFDVSLlnIEENVFDvvsTSGDTHLGGSD FDQKVTEYLLDVFKrkygkdvskdkravtrlrrEAERAKRTLSVQQQD-- -RIEIENLADGVDFSFTLTRAKFEELNMDLFKSTIAPVKKVLEDSKMSKG AIHE------VVLVGGSTRIPKVQQLLKEFF----------NGKEPSRG- -----INPDEAVAYGAAVQGGVLSNIKG-------TEDIVLLDTTPL-tl gietvggvmtsliprnthipisksqifstyqdnqqsvtiqvfegeram >gi|1346046|sp|P47203|FTSA_PSEAE_7:230 CELL DIVISION PROTEIN FTSA tssssr-------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------------------------------LAS AYSVLTEDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTND IAMALRTPTQYAEEIKIRYACALAKLAgAGETIKVPTVGDRPPGELSRQA LAEVVEPRYDELFTLVQAELRRSGYE------DLIPAGIVLTGGTSKMEG AVELAEEIFHMPVRLGVPY-----SVKGLTDVVRNPIYSTGVGLLMYGLQ KQSDGMsmsvsgsSYSSDEPKAPVLERLKRWV-qgnf >gi|7462820|pir||A72273_1:382 hypothetical protein TM1277 - Thermotoga maritima (strain MSB8)gi|4981835|gb|AAD36352.1|AE001783_3 (AE001783) cell division protein FtsA, putative [Thermotoga maritima] --------MIFALDVGTRKIAGLIAVEEKGTIRIVdsELIEHKTRTMFDG QVHDVLGVAETVKEVKERLESRNEIELK-EVAVALAGRFLKTQVGEAELD FSKVG-HITREDVMKLEIEAVtkaQESVEEDFFCVGYSVVEYRLDGMW-M KKLEGHRGGKAYVKVVSAFLPVHVVDSLMRVLETVGLTPVHVTLEPIAAM DLTVPEDLRYLNISLVDVGAGTSDIAISKEGTVVAYGMIPMAGDEITEAI GKKFLLDFQTAEHVKRTVFS-------EERVKVKNI-LDREIELNVREVS EAIKPVVDQITTEISTVVTELN--------GGAPSVVMVVGGGAKVPGFV ESLARKLDLPlDRV----SLKSVESTGLVEdltgKVKGSEYITPVGIAYS AMRNRGSV--------FSQVF--------vngvpvklmggvgrysvmqvl iqagyrfsslvggemisfelngktllrpk >gi|2829291|gb|AAC00520.1|_1:280 (AF044413) HSP70 [Schistosoma japonicum] -------------------------------------------------- -------------------------------------------------- ---------QIGAFVLIKMKETAESYL----------------------- ----GSKVKNVVITVPAYFNDSQRQATKDagkiAGMEVLRVINEPTAAAL AYGLDRTDDKTIAVYDLGGGTFDISVleIQKGVFEvksTNGDTFLGGEDF DNELLRFLVKEFQreqgidvtkdpmalqrvkeAAEKAKIELSSSL----- QTDINLPYLTMDkaGPKHmhlkLTRAKLEHLVEPLIKRTIDPCNKALKDA EVKASDIGE------IILVGGMTRMPKVQETVEKIF-----------GKT PSKS------VNPDEAVAMGAAIQGGVLAGD---------VTVVLLLDVT PLSlgietlggvmtklinrnttiptkksqvfstaadgqtqveikvyqger ema >gi|2253225|gb|AAB62884.1|_3:225 (AF004553) 70 kDa heat shock protein [Paracoccidioides brasiliensis] ar------------------------------------------------ -------------------------------------------------- -------------------------------------------------- ---------------------------------------------AAIAY GLDKkaEGERNVLIFDLGGGTFDVSLltIEEAIFEvksTAGDTHLGGEDF DNRLVNHFVNEFKrtdkkdlffnaralrrlrtACERAKRTLSSAAQT--- SIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVVRDAKIDKSS VHE------IVLVGGSTRIPRIQKLVSDFF----------NGKEPNKS-- ----INPDEAVAYGAAVQAAILSGDT----TSKSTNEILLLDVAPLSvgi etaggvmtplikrnttiptkksetfstfadnqpgvliqvfegerart >gi|2706556|emb|CAA78755.1|_1:221 (Z15037) heat shock protein 70 [Aplysia californica] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------YFNDAQRQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------INPDEA------------------------------------- >gi|345402|pir||A44261_1:209 dnaK-type molecular chaperone HSP70a - California sea hare (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------RQATKDagaiAGLNVLRIINEPTAAAL AYGLDKgqKGEKHVLIFDLGGGTFDVSVlaIDEGSIFevkaTAGDTHLGG EDFDNRLVAHFIQEFKrkhnkdisknarairrlrtACERAKRTLSSSSEA ---SIEIDSLFEGIDYYTKVSRARFEELCGDLFRNTLEPVETALRDAKLD KGKIDE------VVLVGGSTRIPKIQKLLTDFF----------NGKELNK S------------------------------------------------- >gi|2661598|emb|CAA15711.1|_14:456 (AL009196) /prediction=(method:""genefinder"", version:""084"", score:""150.41""); /prediction=(method:""genscan"", version:""1.0""); /match=(desc:""HEAT-SHOCK PROTEIN 110 KD (KIAA0201)"", species:""HOMO SAPIENS (HUMAN)"", ranges:(query:12688..12861, t>gi|7290308|gb|AAF45769.1| (AE003423) EG:25E8.1 gene product [Drosophila melanogaster] mklvlllsallag-IALSQGAAVMSVDLGSEWMKVGVvspgvpmeialnR ESKRKTPAILAFrdgtrtigEDAQTIGIKdpnSAYGYLLDLLGKTIDNPI VDLYRK-----------RFPYYNIVGDPERNTVVFrKSDTDEFSVEElVA QLLVKAKQFAQESVQQP----------------------------ITECV LTVPGYFGQAEREALLSaaqlANLKVLQLINDYAAVALNYGVFHRGEINe taqyFLFYDMGAYKTSAAVVSYQLVKdkqtreINPVVQVlgvgydrtlGG LEIQLRLRDYLAQEFNalkktktdvttspralaklfkEAGRLKNVLSANT EF---FAQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSH LS------LDVINQVILFGGGTRVPRVQETIKAVI--KQELGKNLNADES ATMGAVYKAADLSagfkvkKFVVKDATLFPLQVSFERDPGDGAA-VKQVK RALFALMNpypqkkvitfnkhtddfefyvnyadldryskeeiaalgslnv tkvqlkqv >gi|1854603|gb|AAB48222.1|_1:215 (U49134) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGLDKKKDETIAVFDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDDI DEALVGWIIDEFKkdqgidlaqdkmalqrlkEPSRAKVELSSAM-----E TEIQLPFITADasGPKHlvmkLTRAKFEALVEPLLKRLMPPVEQAIKDAG LEPKDIEE------IVLVGGSTRIPKVQEMVKGFF-----------GKEP NKS------VNPDEAVA--------------------------------- -- >gi|295365|gb|AAA30206.1|_1:208 (L14478) heat shock protein 70 [Trypanosoma brucei] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagsiAGLEVLRIVNEPTAAAI AYGRDRsseGAMKTVLIFDLGGGTFDVTLlnIDGGLFEvraTAGDTHLGG EDFDSRLVDYFATEFRtrtgkdlrgnaramrrlrtACERVKRTLSSSAST ---NIAIDALYEGFDFFSKITRARFEEMCRDQFERCLEPVRKVLKDAEVD ASAVDD------VVLVGGSTRIPRVQQLVQNFF----------NGKELNR S------------------------------------------------- >gi|1854597|gb|AAB48219.1|_1:216 (U49131) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagqiAGLEVERIINEPTAAAL AYGLEKKKNEKIVVFDLGGGTFDVSVleVTEELVEvlsTNGDTHLGGDDF DEELINFIAGKFKaehgidlrkdpmalqrlreAAEKGKKELSSSQ----- QTDINPPFITADasgakhLQMSITRAEFERLCDPLFERCREPVTKALKDA KLDPKEIDE------VVLVGGSTRIPKVQELVREMF-----------GKE PHKG------VNPDEAVA-------------------------------- --- >gi|1854613|gb|AAB48227.1|_1:216 (U49139) 70-kDa heat shock protein [unidentified soil organism] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------QATKDagkiAGLEVLRIVNEPTAAAL AYGSDKKKDETIAVYDFGGGTFDISIleVGEGVVEvksTNGDTHLGGDNI DQKVMDWIVDEFIkdqgidlskdkmalqrlkeAAEKAKMELSSVM----- ETEINLPFIIADasGPKHltmkLTRARFEQLVEDLLQKSVGPCKQALSDA GVKPEQIDE------VVLVGGSTRIPRVQQIVRDLF-----------KKE PHKG------VNPDEAVA-------------------------------- --- >gi|1084481|pir||S48023_1:172 dnaK-type molecular chaperone hsp70.1 - maize (fragment) -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------GGEDFDNRMVNHFV QEFKrknkkditgnpralrrlrtACERAKRTLSSTAQT---TIEIDSLYE GIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHD------ VVLVGGSTRIPRVQQLLQDFF----------NGKELCKN------INPDE AVAYGAAVQAAILSGE-----GNEKVQDLLLLDVTPLSlgletaggvmtv liprnttiptkkeqvfstysdnqpgv >gi|1808585|emb|CAA67132.1|_5:160 (X98508) heat shock protein 70 [Agaricus bisporus] slln---------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------INGGVFAvkaTAGDTHLGGEDFDN ALLEHFKNEFKkktkfdisddaralrrlrsACERAKRTLSSVTQT---MV EVDSLYQGEDFSASITRARFEEINAVLFKSTLEPVEKVLKDAKMAHEKVD D------IVLVGGSTRIPKVQALVSEYF----------GGRQLNKS---- --INPDE-------------------------------------- >gi|1196309|gb|AAB51401.1|_1:96 (L76303) putative [Borrelia burgdorferi] -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------RPPQEKSRKELSVIINS RLREIFEMMKAEILKRGLY------NKINGGIVLTGGGALFPGISNLIEE VFNYPARIGLPM-----SINGIGEEHIDPKFSSALGLVLY---------- -------------------kheqqkfnklkkvsskvkrknkissklkgwf lkewf >gi|6715488|gb|AAF26433.1|AF218835_4_1:109 (AF218835) putative FtsA ortholog [Clostridium perfringens] M-----SKNIVGLDIGNRNICASISGEnENGEFEVLDFIVKDLQGVSKGK IIDEESVVKTIKECLKELEEKSGHNIR-GVYLSLKNNDCRMVENKGYSYT DNDDSLVFKENVEEA----------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------- >gi|1518098|gb|AAC24602.1|_3:83 (U65939) ATP binding protein [Azotobacter vinelandii] sy------------------------------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------PPACLLTGGSAKMEGAVELA EEIFHMPVRLGVPH-----SVRGMDDVIGNPIYSTGVGLLLYGLQKQTEA RRIR----HQQLWRRNQDTC-pgttqrwfqgnf >gi|420209|pir||S12830_2:53 heat shock protein 70 - mouse (fragments) d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDVL --------------------iqvyegeramtkdwldknqta >gi|55072|emb|CAA38267.1|_2:51 (X54401) heat shock protein 70 cognate [Mus musculus] d------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------IVLVGGSTRIPKIQKLLQ DFF----------NGKELNKS------INPDEAVAYGAAVQAAILSGD-- -------------------- --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:19:05 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07622 for Message-Id: <200005200022.RAA03151@alpha.cse.ucsc.edu> Subject: T0089(database hits) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following are search results using the SAM-T99 method for a sequence query against a database. If there are no hits associated with this output, then your score cutoff was too conservative. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii Content-Disposition: attachment; filename="t99-results.t99dbhits.txt" The E-value is an estimate of approximately how many sequences would score this well by chance in the database searched. For SAM-T99, E-values less than about 0.01 are roughly equivalent, as sequences that score that well have most likely already been included in the SAM-T99 multiple alignment. Database: PDB Score method: average Summary of Database Hits: Average Target Template SeqID Reverse EValue Reverse EValue Reverse EValue SeqLabel 1hpm -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He 1ngi -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngj -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 3hsc -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase 1hjoA -225.6 2.247e-94 -225.6 2.2e-94 --------- --------- : mol:protein length:380 Heat-Shock 70Kd Protein 1nga -225.1 3.704e-94 -225.1 3.7e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngd -225 4.218e-94 -225 4.2e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngb -224.9 4.616e-94 -224.9 4.6e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngc -224.8 4.95e-94 -224.8 5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1atr -224.6 6.293e-94 -224.6 6.3e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngf -224.4 7.534e-94 -224.4 7.5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ba0 -224.2 9.02e-94 -224.2 9e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein 1kaz -224 1.205e-93 -224 1.2e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1ats -223.6 1.745e-93 -223.6 1.8e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngh -223.3 2.356e-93 -223.3 2.4e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1nge -222.7 4.166e-93 -222.7 4.2e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngg -222.6 4.558e-93 -222.6 4.6e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1qqoA -222.3 6.34e-93 -222.3 6.4e-93 --------- --------- : mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) 1kax -222.2 7.148e-93 -222.2 7.1e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1qqnA -221.1 2.063e-92 -221.1 2.1e-92 --------- --------- : mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.a2m' Content-Disposition: attachment; filename="t99-results.t99pairwise.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hpm mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngi mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngj mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >3hsc mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hjoA mol:protein length:380 Heat-Shock 70Kd Protein kaaa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVALNpqNTVFDAKRLIGRKFGdPVVQSDMKHW PFQVINdgdkPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYL----- ----------------------GYPVTNAVITVPAYFNDSQRQATKDagv iAGLNVLRIINEPTAAAIAYGLDRtgKGERNVLIFDLGGGTFDVSIltID DGIFEvkaTAGDTHLGGEDFDNRLVNHFVEEFKrkhkkdisqnkravrrl rtACERAKRTLSSSTQA---SLEIDSLFEGIDFYTSITRARFEELCSDLF RSTLEPVEKALRDAKLDKAQIHD------LVLVGGSTRIPKVQKLLQDFF ----------NGRDLNKS------INPDEAVAYGAAVQAAILMG------ ----------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nga mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINSPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngd mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFNVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngb mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINQPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngc mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFSVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1atr mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGVFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngf mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFNLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ba0 mol:protein length:386 Heat-Shock Cognate 70Kd Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFKVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kaz mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAERLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ats mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGEFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngh mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGINLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nge mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFSLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngg mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGISLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqoA mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMKHWP FMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINSPTAAAIAYGLDKavGAERNVLIFDLGGGTFDVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravrrlr tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kax mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAMRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqnA mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRAFDdAVVQSDMKHWP FMVVNdagaPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINEPTAAAIAYGLDKavGAERNVLIFDLGGGTFSVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrahakdisenkravrrla tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.casp.al' Content-Disposition: attachment; filename="t99-results.t99pairwise.casp.al" PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hpm T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngi T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngj T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 3hsc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hjo_A T 11 I 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 L 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 K 77 L 75 F 78 R 76 G 79 S 77 P 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 Q 93 R 90 V 94 E 91 I 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 S 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 A 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 I 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 Y 137 A 157 P 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 I 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 R 187 E 203 K 190 K 204 G 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 D 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 L 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 V 242 T 251 E 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 L 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 F 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 C 306 H 299 S 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 S 312 I 305 T 313 M 306 L 314 S 307 E 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 A 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 L 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 V 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 R 357 R 366 D 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 M 381 Y 396 G 382 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nga T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngd T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 N 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngb T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 Q 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1atr T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 V 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngf T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 N 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ba0 T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 K 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kaz T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 E 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ats T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 E 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngh T 11 V 7 S 12 G 8 I 13 I 9 D 14 N 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nge T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 S 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngg T 11 V 7 S 12 G 8 I 13 I 9 D 14 S 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqo_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kax T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 M 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqn_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 A 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:35:11 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07699 for Message-Id: <200005200038.RAA03628@alpha.cse.ucsc.edu> Subject: T0089(database hits) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following are search results using the SAM-T99 method for a sequence query against a database. If there are no hits associated with this output, then your score cutoff was too conservative. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii Content-Disposition: attachment; filename="t99-results.t99dbhits.txt" The E-value is an estimate of approximately how many sequences would score this well by chance in the database searched. For SAM-T99, E-values less than about 0.01 are roughly equivalent, as sequences that score that well have most likely already been included in the SAM-T99 multiple alignment. Database: PDB Score method: average Summary of Database Hits: Average Target Template SeqID Reverse EValue Reverse EValue Reverse EValue SeqLabel 1hpm -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He 1ngi -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngj -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 3hsc -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase 1hjoA -225.6 2.247e-94 -225.6 2.2e-94 --------- --------- : mol:protein length:380 Heat-Shock 70Kd Protein 1nga -225.1 3.704e-94 -225.1 3.7e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngd -225 4.218e-94 -225 4.2e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngb -224.9 4.616e-94 -224.9 4.6e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngc -224.8 4.95e-94 -224.8 5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1atr -224.6 6.293e-94 -224.6 6.3e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngf -224.4 7.534e-94 -224.4 7.5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ba0 -224.2 9.02e-94 -224.2 9e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein 1kaz -224 1.205e-93 -224 1.2e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1ats -223.6 1.745e-93 -223.6 1.8e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngh -223.3 2.356e-93 -223.3 2.4e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1nge -222.7 4.166e-93 -222.7 4.2e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngg -222.6 4.558e-93 -222.6 4.6e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1qqoA -222.3 6.34e-93 -222.3 6.4e-93 --------- --------- : mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) 1kax -222.2 7.148e-93 -222.2 7.1e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1qqnA -221.1 2.063e-92 -221.1 2.1e-92 --------- --------- : mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.a2m' Content-Disposition: attachment; filename="t99-results.t99pairwise.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hpm mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngi mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngj mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >3hsc mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hjoA mol:protein length:380 Heat-Shock 70Kd Protein kaaa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVALNpqNTVFDAKRLIGRKFGdPVVQSDMKHW PFQVINdgdkPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYL----- ----------------------GYPVTNAVITVPAYFNDSQRQATKDagv iAGLNVLRIINEPTAAAIAYGLDRtgKGERNVLIFDLGGGTFDVSIltID DGIFEvkaTAGDTHLGGEDFDNRLVNHFVEEFKrkhkkdisqnkravrrl rtACERAKRTLSSSTQA---SLEIDSLFEGIDFYTSITRARFEELCSDLF RSTLEPVEKALRDAKLDKAQIHD------LVLVGGSTRIPKVQKLLQDFF ----------NGRDLNKS------INPDEAVAYGAAVQAAILMG------ ----------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nga mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINSPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngd mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFNVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngb mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINQPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngc mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFSVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1atr mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGVFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngf mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFNLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ba0 mol:protein length:386 Heat-Shock Cognate 70Kd Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFKVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kaz mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAERLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ats mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGEFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngh mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGINLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nge mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFSLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngg mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGISLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqoA mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMKHWP FMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINSPTAAAIAYGLDKavGAERNVLIFDLGGGTFDVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravrrlr tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kax mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAMRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqnA mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRAFDdAVVQSDMKHWP FMVVNdagaPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINEPTAAAIAYGLDKavGAERNVLIFDLGGGTFSVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrahakdisenkravrrla tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.casp.al' Content-Disposition: attachment; filename="t99-results.t99pairwise.casp.al" PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hpm T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngi T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngj T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 3hsc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hjo_A T 11 I 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 L 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 K 77 L 75 F 78 R 76 G 79 S 77 P 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 Q 93 R 90 V 94 E 91 I 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 S 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 A 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 I 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 Y 137 A 157 P 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 I 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 R 187 E 203 K 190 K 204 G 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 D 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 L 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 V 242 T 251 E 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 L 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 F 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 C 306 H 299 S 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 S 312 I 305 T 313 M 306 L 314 S 307 E 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 A 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 L 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 V 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 R 357 R 366 D 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 M 381 Y 396 G 382 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nga T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngd T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 N 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngb T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 Q 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1atr T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 V 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngf T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 N 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ba0 T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 K 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kaz T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 E 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ats T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 E 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngh T 11 V 7 S 12 G 8 I 13 I 9 D 14 N 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nge T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 S 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngg T 11 V 7 S 12 G 8 I 13 I 9 D 14 S 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqo_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kax T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 M 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqn_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 A 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:39:18 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07725 for Message-Id: <200005200043.RAA10871@alpha.cse.ucsc.edu> Subject: T0089(target 99 secondary structure prediction) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 secondary structure prediction in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.fasta' Content-Disposition: attachment; filename="t99-results.t99secstr.fasta" >T0089 LLLLLLLLEEEEEELLLLEEEEEEEEELLLEEEEEEELLLLLLLLLLLLELLHHHHHHHHHHHHHHHHHHHLLLLLLLEEEEELLLEEEEELLEEEEEELLLLLLLLHHHHHHHHHHHHHHHLLLLLEEEEELLLEEEELLLLLLLLLLLLLLLLEEEEEEEEELLHHHHHHHHHHHHHHLLLEEEEEELHHHHHHHHLLLLLLLLLEEEEELLLLLEEEEEEELLEEEELLLELLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHLHLLLLLEEEEELLLLLLHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLLL --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.casp.ss' Content-Disposition: attachment; filename="t99-results.t99secstr.casp.ss" PFRMAT SS TARGET T0089 AUTHOR UCSC Target99 server METHOD This prediction was derived from the following methods METHOD by averaging the corresponding probabilities: METHOD Method 0: METHOD TARGET T0089 METHOD Using neural net overrep-2500-IDaa13-5-9-7-10-5-9-11-ehl2-seeded2-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 9 METHOD 7 10 METHOD 5 9 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment /projects/compbio/tmp/hmm-target99-alpha-18073/target-align-18073.a2m METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 61.9588 METHOD METHOD CHAIN 1 METHOD Method 1: METHOD Prediction using SAM HMM nearest-neighbor METHOD sequence: T0089 METHOD model_file: ./tmp.alpha.11463/model.mod METHOD database_files: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.seq /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.2d METHOD scoring_mode: local METHOD null_model: reverse METHOD scoring_algorithm: EM METHOD adjust_score: 2 METHOD date: Fri May 19 17:34:52 2000 METHOD Method 2: METHOD ###begin 0 METHOD METHOD Protein secondary structure prediction by universal HMM METHOD HMM file: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/scripts/gdac.test.initreest.38state.abb.isites.gd.updated.ghmm-128reest-1-128-105-0.07gd METHOD Alignment file: /projects/compbio/tmp/hmm-target99-alpha-18073/target-align-18073.a2m METHOD METHOD guide seq name: T0089 METHOD ###end 0 MODEL 1 M C 0.67 I C 0.549 D C 0.512 L C 0.454 S C 0.494 K C 0.511 T C 0.529 V C 0.423 F E 0.572 Y E 0.655 T E 0.674 S E 0.658 I E 0.605 D E 0.474 I C 0.568 G C 0.696 S C 0.591 R C 0.501 Y E 0.461 I E 0.613 K E 0.676 G E 0.716 L E 0.702 V E 0.673 L E 0.591 G E 0.504 K E 0.44 R C 0.442 D C 0.614 Q C 0.665 E E 0.457 W E 0.599 E E 0.653 A E 0.69 L E 0.658 A E 0.558 F E 0.434 S C 0.5 S C 0.448 V C 0.42 K C 0.411 S C 0.426 R C 0.435 G C 0.432 L C 0.438 D C 0.504 E C 0.525 G C 0.541 E C 0.419 I E 0.456 K C 0.399 D C 0.555 A H 0.713 I H 0.735 A H 0.739 F H 0.724 K H 0.765 E H 0.764 S H 0.76 V H 0.777 N H 0.772 T H 0.784 L H 0.77 L H 0.786 K H 0.79 E H 0.792 L H 0.789 E H 0.76 E H 0.745 Q H 0.7 L H 0.621 Q C 0.599 K C 0.617 S C 0.493 L C 0.472 R C 0.567 S C 0.572 D C 0.392 F E 0.556 V E 0.596 I E 0.597 S E 0.512 F E 0.403 S C 0.507 S C 0.488 V C 0.472 S E 0.429 F E 0.488 E E 0.515 R E 0.492 E E 0.399 D C 0.493 T C 0.452 V E 0.486 I E 0.547 E E 0.588 R E 0.613 D E 0.572 F E 0.477 G C 0.546 E C 0.655 E C 0.637 K C 0.595 R C 0.522 S C 0.411 I C 0.424 T C 0.654 L H 0.725 D H 0.787 I H 0.786 L H 0.803 S H 0.81 E H 0.82 M H 0.812 Q H 0.81 S H 0.814 E H 0.811 A H 0.782 L H 0.754 E H 0.697 K H 0.639 L H 0.516 K C 0.471 E C 0.484 N C 0.512 G C 0.538 K C 0.47 T E 0.437 P E 0.546 L E 0.547 H E 0.481 I E 0.426 F C 0.486 S C 0.527 K C 0.424 R E 0.416 Y E 0.515 L E 0.515 L E 0.394 D C 0.584 D C 0.609 E C 0.556 R C 0.501 I C 0.534 V C 0.537 F C 0.552 N C 0.706 P C 0.552 L C 0.481 D C 0.501 M C 0.491 K C 0.45 A C 0.462 S C 0.448 K C 0.38 I E 0.408 A E 0.481 I E 0.515 E E 0.531 Y E 0.605 T E 0.641 S E 0.669 I E 0.655 V E 0.559 V C 0.439 P C 0.544 L H 0.456 K H 0.537 V H 0.619 Y H 0.675 E H 0.735 M H 0.742 F H 0.771 Y H 0.773 N H 0.767 F H 0.766 L H 0.757 Q H 0.762 D H 0.752 T H 0.631 V C 0.607 K C 0.656 S C 0.479 P E 0.456 F E 0.494 Q E 0.557 L E 0.597 K E 0.572 S E 0.427 S C 0.45 L H 0.479 V H 0.614 S H 0.666 T H 0.669 A H 0.664 E H 0.652 G H 0.617 V H 0.511 L C 0.498 T C 0.588 T C 0.592 P C 0.506 E C 0.482 K C 0.504 D C 0.57 R C 0.558 G C 0.573 V E 0.581 V E 0.706 V E 0.732 V E 0.695 N E 0.556 L C 0.543 G C 0.754 Y C 0.774 N C 0.739 F C 0.544 T E 0.466 G E 0.585 L E 0.685 I E 0.693 A E 0.692 Y E 0.632 K E 0.457 N C 0.58 G C 0.609 V E 0.489 P E 0.61 I E 0.628 K E 0.55 I C 0.452 S C 0.532 Y C 0.427 V E 0.414 P C 0.457 V C 0.5 G C 0.639 M H 0.48 K H 0.52 H H 0.553 V H 0.574 I H 0.611 K H 0.725 D H 0.726 V H 0.751 S H 0.76 A H 0.755 V H 0.738 L H 0.701 D H 0.602 T H 0.472 S C 0.46 F H 0.638 E H 0.626 E H 0.682 S H 0.761 E H 0.762 R H 0.75 L H 0.711 I H 0.696 I H 0.656 T H 0.628 H H 0.572 G H 0.481 N H 0.445 A C 0.432 V C 0.452 Y C 0.503 N C 0.538 D C 0.54 L C 0.558 K C 0.567 E C 0.535 E C 0.386 E E 0.47 I E 0.498 Q E 0.453 Y E 0.388 R C 0.408 G C 0.402 L C 0.441 D C 0.536 G C 0.586 N C 0.608 T C 0.589 I C 0.562 K C 0.453 T C 0.392 T C 0.442 T C 0.61 A H 0.809 K H 0.856 K H 0.859 L H 0.861 S H 0.872 V H 0.883 I H 0.868 I H 0.854 H H 0.867 A H 0.861 R H 0.855 L H 0.857 R H 0.88 E H 0.864 I H 0.853 M H 0.851 S H 0.854 K H 0.86 S H 0.869 K H 0.881 K H 0.875 F H 0.863 F H 0.856 R H 0.821 E H 0.807 V H 0.671 E C 0.586 A C 0.634 K C 0.628 I C 0.511 V C 0.457 E H 0.439 E H 0.439 G C 0.429 E H 0.45 I C 0.42 G C 0.426 I C 0.538 P C 0.579 G C 0.567 G E 0.48 V E 0.725 V E 0.789 L E 0.761 T E 0.572 G C 0.636 G C 0.652 G C 0.512 A C 0.442 K C 0.441 I C 0.441 P H 0.546 R H 0.618 I H 0.744 N H 0.778 E H 0.794 L H 0.784 A H 0.783 T H 0.774 E H 0.752 V H 0.719 F H 0.59 K C 0.569 S C 0.611 P C 0.514 V E 0.447 R E 0.526 T E 0.513 G C 0.431 C C 0.531 Y C 0.594 A C 0.585 N C 0.622 S C 0.691 D C 0.646 R C 0.627 P C 0.579 S C 0.524 I C 0.457 I C 0.472 N C 0.605 A C 0.57 D C 0.435 E H 0.43 V H 0.423 A C 0.393 N C 0.58 D C 0.773 P H 0.474 S H 0.575 F H 0.597 A H 0.588 A H 0.583 A H 0.599 F H 0.595 G H 0.57 N H 0.552 V H 0.566 F H 0.559 A H 0.542 V H 0.474 S H 0.402 E C 0.379 N C 0.468 P C 0.559 Y C 0.559 E C 0.545 E C 0.496 T C 0.503 P C 0.529 V C 0.566 K C 0.61 S C 0.615 E C 0.548 N C 0.496 P H 0.492 L H 0.598 K H 0.62 K H 0.629 I H 0.647 F H 0.629 R H 0.648 L H 0.594 F H 0.533 K H 0.549 E H 0.482 L C 0.453 M C 0.526 E C 0.603 END --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:43:33 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07755 for Message-Id: <200005200047.RAA18697@alpha.cse.ucsc.edu> Subject: T0089(database hits) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following are search results using the SAM-T99 method for a sequence query against a database. If there are no hits associated with this output, then your score cutoff was too conservative. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii Content-Disposition: attachment; filename="t99-results.t99dbhits.txt" The E-value is an estimate of approximately how many sequences would score this well by chance in the database searched. For SAM-T99, E-values less than about 0.01 are roughly equivalent, as sequences that score that well have most likely already been included in the SAM-T99 multiple alignment. Database: PDB Score method: average Summary of Database Hits: Average Target Template SeqID Reverse EValue Reverse EValue Reverse EValue SeqLabel 1hpm -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He 1ngi -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngj -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 3hsc -225.9 1.75e-94 -225.9 1.8e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase 1hjoA -225.6 2.247e-94 -225.6 2.2e-94 --------- --------- : mol:protein length:380 Heat-Shock 70Kd Protein 1nga -225.1 3.704e-94 -225.1 3.7e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngd -225 4.218e-94 -225 4.2e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngb -224.9 4.616e-94 -224.9 4.6e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngc -224.8 4.95e-94 -224.8 5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1atr -224.6 6.293e-94 -224.6 6.3e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngf -224.4 7.534e-94 -224.4 7.5e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ba0 -224.2 9.02e-94 -224.2 9e-94 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein 1kaz -224 1.205e-93 -224 1.2e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1ats -223.6 1.745e-93 -223.6 1.8e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa 1ngh -223.3 2.356e-93 -223.3 2.4e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1nge -222.7 4.166e-93 -222.7 4.2e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1ngg -222.6 4.558e-93 -222.6 4.6e-93 --------- --------- : mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase 1qqoA -222.3 6.34e-93 -222.3 6.4e-93 --------- --------- : mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) 1kax -222.2 7.148e-93 -222.2 7.1e-93 --------- --------- : mol:protein length:381 70Kd Heat Shock Cognate Protein 1qqnA -221.1 2.063e-92 -221.1 2.1e-92 --------- --------- : mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.a2m' Content-Disposition: attachment; filename="t99-results.t99pairwise.a2m" >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hpm mol:protein length:386 44K Atpase Fragment (N-Terminal) Of 7Okda He mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngi mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngj mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >3hsc mol:protein length:386 Heat-Shock Cognate 7Okd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1hjoA mol:protein length:380 Heat-Shock 70Kd Protein kaaa----------IGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPS YVAFtdtERLIGDAAKNQVALNpqNTVFDAKRLIGRKFGdPVVQSDMKHW PFQVINdgdkPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYL----- ----------------------GYPVTNAVITVPAYFNDSQRQATKDagv iAGLNVLRIINEPTAAAIAYGLDRtgKGERNVLIFDLGGGTFDVSIltID DGIFEvkaTAGDTHLGGEDFDNRLVNHFVEEFKrkhkkdisqnkravrrl rtACERAKRTLSSSTQA---SLEIDSLFEGIDFYTSITRARFEELCSDLF RSTLEPVEKALRDAKLDKAQIHD------LVLVGGSTRIPKVQKLLQDFF ----------NGRDLNKS------INPDEAVAYGAAVQAAILMG------ ----------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nga mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINSPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngd mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFNVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngb mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINQPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngc mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFSVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1atr mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGVFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngf mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFNLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ba0 mol:protein length:386 Heat-Shock Cognate 70Kd Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFKVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kaz mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAERLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ats mol:protein length:386 Heat-Shock Cognate 70 Kd Protein (44 Kd Atpa mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGEFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngh mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGINLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1nge mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFSLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1ngg mol:protein length:386 Heat-Shock Cognate 70Kd Protein (44Kd Atpase mskgpa----------VGISLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILSGDK-- -------------------se >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqoA mol:protein length:378 Hydrolase (Acting On Acid Anhydrides) gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRRFDdAVVQSDMKHWP FMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINSPTAAAIAYGLDKavGAERNVLIFDLGGGTFDVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravrrlr tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1kax mol:protein length:381 70Kd Heat Shock Cognate Protein mskgpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTT PSYVAFtdtERLIGDAAKNQVAMNptNTVFDAMRLIGRRFDdAVVQSDMK HWPFMVVNdagrPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL--- ------------------------GKTVTNAVVTVPAYFNDSQRQATKDa gtiAGLNVLRIINEPTAAAIAYGLDKkvGAERNVLIFDLGGGTFDVSIlt IEDGIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrkhkkdisenkravr rlrtACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNAD LFRGTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQD FF----------NGKELNKS------INPDEAVAYGAAVQAAILS----- ------------------- >T0089 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEI KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFG EEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLD MKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT TPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATE VFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSENPYEETP VKSENPLKKIFRLFKELME >1qqnA mol:protein length:378 D206S Mutant Of Bovine 70 Kilodalton Heat Sh gpa----------VGIDLGTTYSCVGVF--QHGKVEIIandqGNRTTPSY VAFtdtERLIGDAAKNQVAMNptNTVFDAKRLIGRAFDdAVVQSDMKHWP FMVVNdagaPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL------ ---------------------GATVTNAVVTVPAYFNDSQRQATKDagti AGLNVLRIINEPTAAAIAYGLDKavGAERNVLIFDLGGGTFSVSIltIED GIFEvksTAGDTHLGGEDFDNRMVNHFIAEFKrahakdisenkravrrla tACERAKRTLSSSTQA---SIEIDSLYEGIDFYTSITRARFEELNADLFR GTLDPVEKALRDAKLDKSQIHD------IVLVGGSTRIPKIQKLLQDFF- ---------NGKELNKS------INPDEAVAYGAAVQAAILS-------- ---------------- --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99pairwise.casp.al' Content-Disposition: attachment; filename="t99-results.t99pairwise.casp.al" PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hpm T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngi T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngj T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 3hsc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1hjo_A T 11 I 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 L 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 K 77 L 75 F 78 R 76 G 79 S 77 P 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 Q 93 R 90 V 94 E 91 I 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 S 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 A 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 I 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 Y 137 A 157 P 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 I 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 R 187 E 203 K 190 K 204 G 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 D 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 L 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 V 242 T 251 E 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 L 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 F 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 C 306 H 299 S 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 S 312 I 305 T 313 M 306 L 314 S 307 E 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 A 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 L 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 V 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 R 357 R 366 D 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 M 381 Y 396 G 382 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nga T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngd T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 N 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngb T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 Q 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngc T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1atr T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 V 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngf T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 N 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K 384 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ba0 T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 K 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kaz T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 E 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ats T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 E 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G 382 E 397 D 383 E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngh T 11 V 7 S 12 G 8 I 13 I 9 D 14 N 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1nge T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 S 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1ngg T 11 V 7 S 12 G 8 I 13 I 9 D 14 S 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 Y 396 G _ E 397 D _ E 398 K _ TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqo_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 S 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1kax T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 M 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 R 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 K 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 D 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END PFRMAT AL TARGET T0089 AUTHOR UCSC SAM-T99 Web Server METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. MODEL 1 PARENT 1qqn_A T 11 V 7 S 12 G 8 I 13 I 9 D 14 D 10 I 15 L 11 G 16 G 12 S 17 T 13 R 18 T 14 Y 19 Y 15 I 20 S 16 K 21 C 17 G 22 V 18 L 23 G 19 V 24 V 20 L 25 F 21 R 28 Q 22 D 29 H 23 Q 30 G 24 E 31 K 25 W 32 V 26 E 33 E 27 A 34 I 28 L 35 I 29 A 36 G 34 F 37 N 35 S 38 R 36 S 39 T 37 V 40 T 38 K 41 P 39 S 42 S 40 R 43 Y 41 G 44 V 42 L 45 A 43 D 46 F 44 E 47 E 48 G 48 R 49 E 49 L 50 I 50 I 51 K 51 G 52 D 52 D 53 A 53 A 54 I 54 A 55 A 55 K 56 F 56 N 57 K 57 Q 58 E 58 V 59 S 59 A 60 V 60 M 61 N 61 N 62 T 62 N 65 L 63 T 66 L 64 V 67 K 65 F 68 E 66 D 69 L 67 A 70 E 68 K 71 E 69 R 72 Q 70 L 73 L 71 I 74 Q 72 G 75 K 73 R 76 S 74 A 77 L 75 F 78 R 76 D 79 S 77 A 81 D 78 V 82 F 79 V 83 V 80 Q 84 I 81 S 85 S 82 D 86 F 83 M 87 S 84 K 88 S 85 H 89 V 86 W 90 S 87 P 91 F 88 F 92 E 89 M 93 R 90 V 94 E 91 V 95 D 92 N 96 T 93 P 101 V 94 K 102 I 95 V 103 E 96 Q 104 R 97 V 105 D 98 E 106 F 99 Y 107 G 100 K 108 E 101 G 109 E 102 E 110 K 103 T 111 R 104 K 112 S 105 S 113 I 106 F 114 T 107 Y 115 L 108 P 116 D 109 E 117 I 110 E 118 L 111 V 119 S 112 S 120 E 113 S 121 M 114 M 122 Q 115 V 123 S 116 L 124 E 117 T 125 A 118 K 126 L 119 M 127 E 120 K 128 K 121 E 129 L 122 I 130 K 123 A 131 E 124 E 132 N 125 A 133 G 126 Y 134 K 127 L 135 K 155 G 136 I 156 A 137 A 157 T 138 I 158 V 139 E 159 T 140 Y 160 N 141 T 161 A 142 S 162 V 143 I 163 V 144 V 164 T 145 V 165 V 146 P 166 P 147 L 167 A 148 K 168 Y 149 V 169 F 150 Y 170 N 151 E 171 D 152 M 172 S 153 F 173 Q 154 Y 174 R 155 N 175 Q 156 F 176 A 157 L 177 T 158 Q 178 K 159 D 179 D 160 T 180 A 165 V 181 G 166 K 182 L 167 S 183 N 168 P 184 V 169 F 185 L 170 Q 186 R 171 L 187 I 172 K 188 I 173 S 189 N 174 S 190 E 175 L 191 P 176 V 192 T 177 S 193 A 178 T 194 A 179 A 195 A 180 E 196 I 181 G 197 A 182 V 198 Y 183 L 199 G 184 T 200 L 185 T 201 D 186 P 202 K 187 E 203 G 190 K 204 A 191 D 205 E 192 R 206 R 193 G 207 N 194 V 208 V 195 V 209 L 196 V 210 I 197 V 211 F 198 N 212 D 199 L 213 L 200 G 214 G 201 Y 215 G 202 N 216 G 203 F 217 T 204 T 218 F 205 G 219 S 206 L 220 V 207 I 221 S 208 A 222 I 209 Y 223 I 212 K 224 E 213 N 225 D 214 G 226 G 215 V 227 I 216 P 228 F 217 I 229 E 218 K 230 T 222 I 231 A 223 S 232 G 224 Y 233 D 225 V 234 T 226 P 235 H 227 V 236 L 228 G 237 G 229 M 238 G 230 K 239 E 231 H 240 D 232 V 241 F 233 I 242 D 234 K 243 N 235 D 244 R 236 V 245 M 237 S 246 V 238 A 247 N 239 V 248 H 240 L 249 F 241 D 250 I 242 T 251 A 243 S 252 E 244 F 253 F 245 E 254 K 246 E 255 A 266 S 256 C 267 E 257 E 268 R 258 R 269 L 259 A 270 I 260 K 271 I 261 R 272 T 262 T 273 H 263 L 274 G 264 S 275 N 265 S 276 A 266 S 277 V 267 T 278 Y 268 Q 279 N 269 A 280 E 273 S 281 E 274 I 282 E 275 E 283 I 276 I 284 Q 277 D 285 Y 278 S 286 R 279 L 287 G 280 Y 288 L 281 E 289 D 282 G 290 G 283 I 291 N 284 D 292 T 285 F 293 I 286 Y 294 K 287 T 295 T 288 S 296 T 289 I 297 T 290 T 298 A 291 R 299 K 292 A 300 K 293 R 301 L 294 F 302 S 295 E 303 V 296 E 304 I 297 L 305 I 298 N 306 H 299 A 307 A 300 D 308 R 301 L 309 L 302 F 310 R 303 R 311 E 304 G 312 I 305 T 313 M 306 L 314 S 307 D 315 K 308 P 316 S 309 V 317 K 310 E 318 K 311 K 319 F 312 A 320 F 313 L 321 R 314 R 322 E 315 D 323 V 316 A 324 E 317 K 325 A 318 L 326 K 319 D 327 I 320 K 328 V 321 S 329 E 322 Q 330 E 323 I 331 G 324 H 332 E 325 D 333 V 332 I 334 V 333 V 335 L 334 L 336 T 335 V 337 G 336 G 338 G 337 G 339 G 338 S 340 A 339 T 341 K 340 R 342 I 341 I 343 P 342 P 344 R 343 K 345 I 344 I 346 N 345 Q 347 E 346 K 348 L 347 L 349 A 348 L 350 T 349 Q 351 E 350 D 352 V 351 F 353 F 352 F 354 N 363 N 355 S 364 G 356 D 365 K 357 R 366 E 358 P 367 L 359 S 368 N 360 I 369 K 361 I 370 S 362 N 377 I 363 D 378 N 364 P 379 P 365 S 380 D 366 F 381 E 367 A 382 A 368 A 383 V 369 A 384 A 370 F 385 Y 371 G 386 G 372 N 387 A 373 V 388 A 374 F 389 V 375 A 390 Q 376 V 391 A 377 S 392 A 378 E 393 I 379 N 394 L 380 P 395 S 381 TER END --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:51:33 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07798 for Message-Id: <200005200055.RAA04529@alpha.cse.ucsc.edu> Subject: T0089(target 99 secondary structure prediction) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 secondary structure prediction in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.fasta' Content-Disposition: attachment; filename="t99-results.t99secstr.fasta" >T0089 LLLLLLLLEEEEEELLLLEEEEEEEEELLLEEEEEEELLLLLLLLLLLLELLHHHHHHHHHHHHHHHHHHHLLLLLLLEEEEELLLEEEEELLEEEEEELLLLLLLLHHHHHHHHHHHHHHHLLLLLEEEEELLLEEEELLLLLLLLLLLLLLLLEEEEEEEEELLHHHHHHHHHHHHHHLLLEEEEEELHHHHHHHHLLLLLLLLLEEEEELLLLLEEEEEEELLEEEELLLELLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHLHLLLLLEEEEELLLLLLHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLLL --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.casp.ss' Content-Disposition: attachment; filename="t99-results.t99secstr.casp.ss" PFRMAT SS TARGET T0089 AUTHOR UCSC Target99 server METHOD This prediction was derived from the following methods METHOD by averaging the corresponding probabilities: METHOD Method 0: METHOD TARGET T0089 METHOD Using neural net overrep-2500-IDaa13-5-9-7-10-5-9-11-ehl2-seeded2-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 9 METHOD 7 10 METHOD 5 9 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment /projects/compbio/tmp/hmm-target99-alpha-14224/target-align-14224.a2m METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 61.9588 METHOD METHOD CHAIN 1 METHOD Method 1: METHOD Prediction using SAM HMM nearest-neighbor METHOD sequence: T0089 METHOD model_file: ./tmp.alpha.8205/model.mod METHOD database_files: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.seq /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.2d METHOD scoring_mode: local METHOD null_model: reverse METHOD scoring_algorithm: EM METHOD adjust_score: 2 METHOD date: Fri May 19 17:48:22 2000 METHOD Method 2: METHOD ###begin 0 METHOD METHOD Protein secondary structure prediction by universal HMM METHOD HMM file: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/scripts/gdac.test.initreest.38state.abb.isites.gd.updated.ghmm-128reest-1-128-105-0.07gd METHOD Alignment file: /projects/compbio/tmp/hmm-target99-alpha-14224/target-align-14224.a2m METHOD METHOD guide seq name: T0089 METHOD ###end 0 MODEL 1 M C 0.67 I C 0.549 D C 0.512 L C 0.454 S C 0.494 K C 0.511 T C 0.529 V C 0.423 F E 0.572 Y E 0.655 T E 0.674 S E 0.658 I E 0.605 D E 0.474 I C 0.568 G C 0.696 S C 0.591 R C 0.501 Y E 0.461 I E 0.613 K E 0.676 G E 0.716 L E 0.702 V E 0.673 L E 0.591 G E 0.504 K E 0.44 R C 0.442 D C 0.614 Q C 0.665 E E 0.457 W E 0.599 E E 0.653 A E 0.69 L E 0.658 A E 0.558 F E 0.434 S C 0.5 S C 0.448 V C 0.42 K C 0.411 S C 0.426 R C 0.435 G C 0.432 L C 0.438 D C 0.504 E C 0.525 G C 0.541 E C 0.419 I E 0.456 K C 0.399 D C 0.555 A H 0.713 I H 0.735 A H 0.739 F H 0.724 K H 0.765 E H 0.764 S H 0.76 V H 0.777 N H 0.772 T H 0.784 L H 0.77 L H 0.786 K H 0.79 E H 0.792 L H 0.789 E H 0.76 E H 0.745 Q H 0.7 L H 0.621 Q C 0.599 K C 0.617 S C 0.493 L C 0.472 R C 0.567 S C 0.572 D C 0.392 F E 0.556 V E 0.596 I E 0.597 S E 0.512 F E 0.403 S C 0.507 S C 0.488 V C 0.472 S E 0.429 F E 0.488 E E 0.515 R E 0.492 E E 0.399 D C 0.493 T C 0.452 V E 0.486 I E 0.547 E E 0.588 R E 0.613 D E 0.572 F E 0.477 G C 0.546 E C 0.655 E C 0.637 K C 0.595 R C 0.522 S C 0.411 I C 0.424 T C 0.654 L H 0.725 D H 0.787 I H 0.786 L H 0.803 S H 0.81 E H 0.82 M H 0.812 Q H 0.81 S H 0.814 E H 0.811 A H 0.782 L H 0.754 E H 0.697 K H 0.639 L H 0.516 K C 0.471 E C 0.484 N C 0.512 G C 0.538 K C 0.47 T E 0.437 P E 0.546 L E 0.547 H E 0.481 I E 0.426 F C 0.486 S C 0.527 K C 0.424 R E 0.416 Y E 0.515 L E 0.515 L E 0.394 D C 0.584 D C 0.609 E C 0.556 R C 0.501 I C 0.534 V C 0.537 F C 0.552 N C 0.706 P C 0.552 L C 0.481 D C 0.501 M C 0.491 K C 0.45 A C 0.462 S C 0.448 K C 0.38 I E 0.408 A E 0.481 I E 0.515 E E 0.531 Y E 0.605 T E 0.641 S E 0.669 I E 0.655 V E 0.559 V C 0.439 P C 0.544 L H 0.456 K H 0.537 V H 0.619 Y H 0.675 E H 0.735 M H 0.742 F H 0.771 Y H 0.773 N H 0.767 F H 0.766 L H 0.757 Q H 0.762 D H 0.752 T H 0.631 V C 0.607 K C 0.656 S C 0.479 P E 0.456 F E 0.494 Q E 0.557 L E 0.597 K E 0.572 S E 0.427 S C 0.45 L H 0.479 V H 0.614 S H 0.666 T H 0.669 A H 0.664 E H 0.652 G H 0.617 V H 0.511 L C 0.498 T C 0.588 T C 0.592 P C 0.506 E C 0.482 K C 0.504 D C 0.57 R C 0.558 G C 0.573 V E 0.581 V E 0.706 V E 0.732 V E 0.695 N E 0.556 L C 0.543 G C 0.754 Y C 0.774 N C 0.739 F C 0.544 T E 0.466 G E 0.585 L E 0.685 I E 0.693 A E 0.692 Y E 0.632 K E 0.457 N C 0.58 G C 0.609 V E 0.489 P E 0.61 I E 0.628 K E 0.55 I C 0.452 S C 0.532 Y C 0.427 V E 0.414 P C 0.457 V C 0.5 G C 0.639 M H 0.48 K H 0.52 H H 0.553 V H 0.574 I H 0.611 K H 0.725 D H 0.726 V H 0.751 S H 0.76 A H 0.755 V H 0.738 L H 0.701 D H 0.602 T H 0.472 S C 0.46 F H 0.638 E H 0.626 E H 0.682 S H 0.761 E H 0.762 R H 0.75 L H 0.711 I H 0.696 I H 0.656 T H 0.628 H H 0.572 G H 0.481 N H 0.445 A C 0.432 V C 0.452 Y C 0.503 N C 0.538 D C 0.54 L C 0.558 K C 0.567 E C 0.535 E C 0.386 E E 0.47 I E 0.498 Q E 0.453 Y E 0.388 R C 0.408 G C 0.402 L C 0.441 D C 0.536 G C 0.586 N C 0.608 T C 0.589 I C 0.562 K C 0.453 T C 0.392 T C 0.442 T C 0.61 A H 0.809 K H 0.856 K H 0.859 L H 0.861 S H 0.872 V H 0.883 I H 0.868 I H 0.854 H H 0.867 A H 0.861 R H 0.855 L H 0.857 R H 0.88 E H 0.864 I H 0.853 M H 0.851 S H 0.854 K H 0.86 S H 0.869 K H 0.881 K H 0.875 F H 0.863 F H 0.856 R H 0.821 E H 0.807 V H 0.671 E C 0.586 A C 0.634 K C 0.628 I C 0.511 V C 0.457 E H 0.439 E H 0.439 G C 0.429 E H 0.45 I C 0.42 G C 0.426 I C 0.538 P C 0.579 G C 0.567 G E 0.48 V E 0.725 V E 0.789 L E 0.761 T E 0.572 G C 0.636 G C 0.652 G C 0.512 A C 0.442 K C 0.441 I C 0.441 P H 0.546 R H 0.618 I H 0.744 N H 0.778 E H 0.794 L H 0.784 A H 0.783 T H 0.774 E H 0.752 V H 0.719 F H 0.59 K C 0.569 S C 0.611 P C 0.514 V E 0.447 R E 0.526 T E 0.513 G C 0.431 C C 0.531 Y C 0.594 A C 0.585 N C 0.622 S C 0.691 D C 0.646 R C 0.627 P C 0.579 S C 0.524 I C 0.457 I C 0.472 N C 0.605 A C 0.57 D C 0.435 E H 0.43 V H 0.423 A C 0.393 N C 0.58 D C 0.773 P H 0.474 S H 0.575 F H 0.597 A H 0.588 A H 0.583 A H 0.599 F H 0.595 G H 0.57 N H 0.552 V H 0.566 F H 0.559 A H 0.542 V H 0.474 S H 0.402 E C 0.379 N C 0.468 P C 0.559 Y C 0.559 E C 0.545 E C 0.496 T C 0.503 P C 0.529 V C 0.566 K C 0.61 S C 0.615 E C 0.548 N C 0.496 P H 0.492 L H 0.598 K H 0.62 K H 0.629 I H 0.647 F H 0.629 R H 0.648 L H 0.594 F H 0.533 K H 0.549 E H 0.482 L C 0.453 M C 0.526 E C 0.603 END --simple mime boundary-- From farmer@cse.ucsc.edu Sat May 20 02:58:06 2000 Return-Path: Received: from alpha.cse.ucsc.edu (alpha.cse.ucsc.edu [128.114.48.14]) by cyborg.bioinfo.pl (8.9.3/8.8.7) with SMTP id CAA07842 for Message-Id: <200005200101.SAA22927@alpha.cse.ucsc.edu> Subject: T0089(target 99 secondary structure prediction) MIME-Version: 1.0 Content-type: multipart/mixed; Boundary="simple mime boundary" Apparently-To: T0089.target99@cafasp.bioinfo.pl --simple mime boundary Content-type: text/plain; charset=us-ascii The following is the Target99 secondary structure prediction in the formats you requested. Citation: K. Karplus, C. Barrett, and R. Hughey, Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 1998, vol. 14, no. 10, pp. 846-856. http://www.cse.ucsc.edu/resesarch/compbio/HMM-apps -------------------------------------------------------- For questions or problems, please see the SAM-T99 FAQ at http://www.cse.ucsc.edu/research/compbio/HMM-apps/sam-t99-faq.html or email us at sam-info@cse.ucsc.edu --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.fasta' Content-Disposition: attachment; filename="t99-results.t99secstr.fasta" >T0089 LLLLLLLLEEEEEELLLLEEEEEEEEELLLEEEEEEELLLLLLLLLLLLELLHHHHHHHHHHHHHHHHHHHLLLLLLLEEEEELLLEEEEELLEEEEEELLLLLLLLHHHHHHHHHHHHHHHLLLLLEEEEELLLEEEELLLLLLLLLLLLLLLLEEEEEEEEELLHHHHHHHHHHHHHHLLLEEEEEELHHHHHHHHLLLLLLLLLEEEEELLLLLEEEEEEELLEEEELLLELLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHLHLLLLLEEEEELLLLLLHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLLL --simple mime boundary Content-type: text/plain; charset=us-ascii; name='t99-results.t99secstr.casp.ss' Content-Disposition: attachment; filename="t99-results.t99secstr.casp.ss" PFRMAT SS TARGET T0089 AUTHOR UCSC Target99 server METHOD This prediction was derived from the following methods METHOD by averaging the corresponding probabilities: METHOD Method 0: METHOD TARGET T0089 METHOD Using neural net overrep-2500-IDaa13-5-9-7-10-5-9-11-ehl2-seeded2-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 9 METHOD 7 10 METHOD 5 9 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment /projects/compbio/tmp/hmm-target99-alpha-30848/target-align-30848.a2m METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 61.9588 METHOD METHOD CHAIN 1 METHOD Method 1: METHOD Prediction using SAM HMM nearest-neighbor METHOD sequence: T0089 METHOD model_file: ./tmp.alpha.24960/model.mod METHOD database_files: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.seq /projects/compbio/bin/scripts/hmm-target99-dir/pcc/data/overrep-2260.verify.mixed.2d METHOD scoring_mode: local METHOD null_model: reverse METHOD scoring_algorithm: EM METHOD adjust_score: 2 METHOD date: Fri May 19 17:56:18 2000 METHOD Method 2: METHOD ###begin 0 METHOD METHOD Protein secondary structure prediction by universal HMM METHOD HMM file: /projects/compbio/bin/scripts/hmm-target99-dir/pcc/scripts/gdac.test.initreest.38state.abb.isites.gd.updated.ghmm-128reest-1-128-105-0.07gd METHOD Alignment file: /projects/compbio/tmp/hmm-target99-alpha-30848/target-align-30848.a2m METHOD METHOD guide seq name: T0089 METHOD ###end 0 MODEL 1 M C 0.67 I C 0.549 D C 0.512 L C 0.454 S C 0.494 K C 0.511 T C 0.529 V C 0.423 F E 0.572 Y E 0.655 T E 0.674 S E 0.658 I E 0.605 D E 0.474 I C 0.568 G C 0.696 S C 0.591 R C 0.501 Y E 0.461 I E 0.613 K E 0.676 G E 0.716 L E 0.702 V E 0.673 L E 0.591 G E 0.504 K E 0.44 R C 0.442 D C 0.614 Q C 0.665 E E 0.457 W E 0.599 E E 0.653 A E 0.69 L E 0.658 A E 0.558 F E 0.434 S C 0.5 S C 0.448 V C 0.42 K C 0.411 S C 0.426 R C 0.435 G C 0.432 L C 0.438 D C 0.504 E C 0.525 G C 0.541 E C 0.419 I E 0.456 K C 0.399 D C 0.555 A H 0.713 I H 0.735 A H 0.739 F H 0.724 K H 0.765 E H 0.764 S H 0.76 V H 0.777 N H 0.772 T H 0.784 L H 0.77 L H 0.786 K H 0.79 E H 0.792 L H 0.789 E H 0.76 E H 0.745 Q H 0.7 L H 0.621 Q C 0.599 K C 0.617 S C 0.493 L C 0.472 R C 0.567 S C 0.572 D C 0.392 F E 0.556 V E 0.596 I E 0.597 S E 0.512 F E 0.403 S C 0.507 S C 0.488 V C 0.472 S E 0.429 F E 0.488 E E 0.515 R E 0.492 E E 0.399 D C 0.493 T C 0.452 V E 0.486 I E 0.547 E E 0.588 R E 0.613 D E 0.572 F E 0.477 G C 0.546 E C 0.655 E C 0.637 K C 0.595 R C 0.522 S C 0.411 I C 0.424 T C 0.654 L H 0.725 D H 0.787 I H 0.786 L H 0.803 S H 0.81 E H 0.82 M H 0.812 Q H 0.81 S H 0.814 E H 0.811 A H 0.782 L H 0.754 E H 0.697 K H 0.639 L H 0.516 K C 0.471 E C 0.484 N C 0.512 G C 0.538 K C 0.47 T E 0.437 P E 0.546 L E 0.547 H E 0.481 I E 0.426 F C 0.486 S C 0.527 K C 0.424 R E 0.416 Y E 0.515 L E 0.515 L E 0.394 D C 0.584 D C 0.609 E C 0.556 R C 0.501 I C 0.534 V C 0.537 F C 0.552 N C 0.706 P C 0.552 L C 0.481 D C 0.501 M C 0.491 K C 0.45 A C 0.462 S C 0.448 K C 0.38 I E 0.408 A E 0.481 I E 0.515 E E 0.531 Y E 0.605 T E 0.641 S E 0.669 I E 0.655 V E 0.559 V C 0.439 P C 0.544 L H 0.456 K H 0.537 V H 0.619 Y H 0.675 E H 0.735 M H 0.742 F H 0.771 Y H 0.773 N H 0.767 F H 0.766 L H 0.757 Q H 0.762 D H 0.752 T H 0.631 V C 0.607 K C 0.656 S C 0.479 P E 0.456 F E 0.494 Q E 0.557 L E 0.597 K E 0.572 S E 0.427 S C 0.45 L H 0.479 V H 0.614 S H 0.666 T H 0.669 A H 0.664 E H 0.652 G H 0.617 V H 0.511 L C 0.498 T C 0.588 T C 0.592 P C 0.506 E C 0.482 K C 0.504 D C 0.57 R C 0.558 G C 0.573 V E 0.581 V E 0.706 V E 0.732 V E 0.695 N E 0.556 L C 0.543 G C 0.754 Y C 0.774 N C 0.739 F C 0.544 T E 0.466 G E 0.585 L E 0.685 I E 0.693 A E 0.692 Y E 0.632 K E 0.457 N C 0.58 G C 0.609 V E 0.489 P E 0.61 I E 0.628 K E 0.55 I C 0.452 S C 0.532 Y C 0.427 V E 0.414 P C 0.457 V C 0.5 G C 0.639 M H 0.48 K H 0.52 H H 0.553 V H 0.574 I H 0.611 K H 0.725 D H 0.726 V H 0.751 S H 0.76 A H 0.755 V H 0.738 L H 0.701 D H 0.602 T H 0.472 S C 0.46 F H 0.638 E H 0.626 E H 0.682 S H 0.761 E H 0.762 R H 0.75 L H 0.711 I H 0.696 I H 0.656 T H 0.628 H H 0.572 G H 0.481 N H 0.445 A C 0.432 V C 0.452 Y C 0.503 N C 0.538 D C 0.54 L C 0.558 K C 0.567 E C 0.535 E C 0.386 E E 0.47 I E 0.498 Q E 0.453 Y E 0.388 R C 0.408 G C 0.402 L C 0.441 D C 0.536 G C 0.586 N C 0.608 T C 0.589 I C 0.562 K C 0.453 T C 0.392 T C 0.442 T C 0.61 A H 0.809 K H 0.856 K H 0.859 L H 0.861 S H 0.872 V H 0.883 I H 0.868 I H 0.854 H H 0.867 A H 0.861 R H 0.855 L H 0.857 R H 0.88 E H 0.864 I H 0.853 M H 0.851 S H 0.854 K H 0.86 S H 0.869 K H 0.881 K H 0.875 F H 0.863 F H 0.856 R H 0.821 E H 0.807 V H 0.671 E C 0.586 A C 0.634 K C 0.628 I C 0.511 V C 0.457 E H 0.439 E H 0.439 G C 0.429 E H 0.45 I C 0.42 G C 0.426 I C 0.538 P C 0.579 G C 0.567 G E 0.48 V E 0.725 V E 0.789 L E 0.761 T E 0.572 G C 0.636 G C 0.652 G C 0.512 A C 0.442 K C 0.441 I C 0.441 P H 0.546 R H 0.618 I H 0.744 N H 0.778 E H 0.794 L H 0.784 A H 0.783 T H 0.774 E H 0.752 V H 0.719 F H 0.59 K C 0.569 S C 0.611 P C 0.514 V E 0.447 R E 0.526 T E 0.513 G C 0.431 C C 0.531 Y C 0.594 A C 0.585 N C 0.622 S C 0.691 D C 0.646 R C 0.627 P C 0.579 S C 0.524 I C 0.457 I C 0.472 N C 0.605 A C 0.57 D C 0.435 E H 0.43 V H 0.423 A C 0.393 N C 0.58 D C 0.773 P H 0.474 S H 0.575 F H 0.597 A H 0.588 A H 0.583 A H 0.599 F H 0.595 G H 0.57 N H 0.552 V H 0.566 F H 0.559 A H 0.542 V H 0.474 S H 0.402 E C 0.379 N C 0.468 P C 0.559 Y C 0.559 E C 0.545 E C 0.496 T C 0.503 P C 0.529 V C 0.566 K C 0.61 S C 0.615 E C 0.548 N C 0.496 P H 0.492 L H 0.598 K H 0.62 K H 0.629 I H 0.647 F H 0.629 R H 0.648 L H 0.594 F H 0.533 K H 0.549 E H 0.482 L C 0.453 M C 0.526 E C 0.603 END --simple mime boundary--