# TARGET T0099 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0099.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 76.5082 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 E 0.75 0.01 0.24 2 F 0.92 0.00 0.07 3 I 0.97 0.00 0.03 4 A 0.98 0.00 0.01 5 I 0.96 0.00 0.03 6 Y 0.85 0.01 0.14 7 D 0.53 0.01 0.45 8 Y 0.39 0.01 0.59 9 K 0.32 0.02 0.67 10 A 0.18 0.03 0.79 11 E 0.13 0.02 0.86 12 T 0.09 0.02 0.89 13 E 0.05 0.16 0.80 14 E 0.08 0.19 0.74 15 D 0.22 0.19 0.59 16 L 0.41 0.07 0.52 17 T 0.55 0.04 0.41 18 I 0.47 0.02 0.50 19 K 0.18 0.02 0.80 20 K 0.04 0.04 0.92 21 G 0.02 0.00 0.97 22 E 0.38 0.00 0.61 23 K 0.84 0.00 0.16 24 L 0.97 0.00 0.03 25 E 0.99 0.00 0.01 26 I 0.99 0.00 0.01 27 I 0.96 0.00 0.04 28 E 0.83 0.00 0.17 29 K 0.19 0.01 0.80 30 E 0.03 0.01 0.96 31 G 0.02 0.01 0.97 32 D 0.03 0.00 0.97 33 W 0.61 0.01 0.38 34 W 0.91 0.00 0.09 35 K 0.94 0.00 0.05 36 A 0.95 0.00 0.04 37 K 0.93 0.00 0.07 38 A 0.86 0.00 0.13 39 I 0.41 0.02 0.58 40 G 0.05 0.02 0.93 41 S 0.01 0.01 0.98 42 G 0.01 0.00 0.98 43 E 0.38 0.00 0.62 44 I 0.66 0.00 0.33 45 G 0.58 0.01 0.41 46 Y 0.67 0.01 0.32 47 I 0.53 0.03 0.45 48 P 0.31 0.06 0.63 49 A 0.15 0.45 0.40 50 N 0.19 0.48 0.33 51 Y 0.33 0.45 0.22 52 I 0.43 0.44 0.12 53 A 0.53 0.32 0.16 54 A 0.52 0.24 0.23 55 A 0.26 0.10 0.65 56 E 0.06 0.03 0.92