# TARGET T0098 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0098.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.50994 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 D 0.073 0.108 0.819 2 N 0.064 0.126 0.810 3 K 0.080 0.144 0.776 4 P 0.140 0.172 0.689 5 K 0.225 0.201 0.574 6 N 0.232 0.238 0.530 7 L 0.161 0.386 0.453 8 D 0.124 0.469 0.407 9 A 0.104 0.634 0.262 10 S 0.079 0.729 0.192 11 I 0.032 0.910 0.058 12 T 0.016 0.951 0.033 13 S 0.014 0.965 0.021 14 I 0.012 0.966 0.022 15 I 0.007 0.977 0.016 16 H 0.003 0.975 0.022 17 E 0.006 0.949 0.045 18 I 0.007 0.873 0.120 19 G 0.019 0.075 0.906 20 V 0.148 0.082 0.770 21 P 0.261 0.112 0.627 22 A 0.189 0.456 0.354 23 H 0.162 0.612 0.227 24 I 0.044 0.870 0.086 25 K 0.010 0.956 0.035 26 G 0.004 0.980 0.016 27 Y 0.003 0.991 0.006 28 L 0.001 0.996 0.003 29 Y 0.001 0.997 0.002 30 L 0.001 0.999 0.001 31 R 0.001 0.999 0.001 32 E 0.001 0.999 0.001 33 A 0.001 0.998 0.002 34 I 0.001 0.996 0.004 35 A 0.001 0.992 0.007 36 M 0.002 0.985 0.014 37 V 0.011 0.949 0.040 38 Y 0.010 0.933 0.057 39 H 0.005 0.923 0.072 40 D 0.007 0.879 0.113 41 I 0.026 0.879 0.095 42 E 0.055 0.860 0.084 43 L 0.088 0.836 0.077 44 L 0.054 0.854 0.091 45 G 0.015 0.911 0.074 46 S 0.009 0.915 0.076 47 I 0.010 0.928 0.063 48 T 0.008 0.919 0.073 49 K 0.005 0.935 0.060 50 V 0.007 0.913 0.080 51 L 0.007 0.903 0.090 52 Y 0.009 0.834 0.157 53 P 0.002 0.952 0.046 54 D 0.003 0.955 0.042 55 I 0.006 0.955 0.039 56 A 0.007 0.957 0.036 57 K 0.008 0.954 0.039 58 K 0.012 0.921 0.067 59 Y 0.013 0.825 0.162 60 N 0.011 0.072 0.918 61 T 0.024 0.063 0.913 62 T 0.016 0.087 0.897 63 A 0.001 0.797 0.202 64 S 0.001 0.948 0.051 65 R 0.001 0.983 0.017 66 V 0.001 0.990 0.009 67 E 0.001 0.995 0.004 68 R 0.001 0.994 0.005 69 A 0.001 0.993 0.006 70 I 0.002 0.985 0.013 71 R 0.003 0.973 0.024 72 H 0.005 0.955 0.040 73 A 0.020 0.947 0.034 74 I 0.051 0.900 0.048 75 E 0.103 0.848 0.049 76 V 0.199 0.733 0.068 77 A 0.236 0.646 0.118 78 W 0.141 0.687 0.172 79 S 0.096 0.615 0.289 80 R 0.056 0.381 0.563 81 G 0.018 0.055 0.927 82 N 0.055 0.112 0.833 83 L 0.032 0.686 0.281 84 E 0.036 0.756 0.208 85 S 0.036 0.821 0.143 86 I 0.020 0.879 0.101 87 S 0.019 0.901 0.080 88 S 0.018 0.895 0.088 89 L 0.024 0.833 0.143 90 F 0.023 0.796 0.181 91 G 0.043 0.215 0.742 92 Y 0.214 0.155 0.632 93 T 0.373 0.155 0.471 94 V 0.258 0.224 0.518 95 S 0.217 0.224 0.559 96 V 0.234 0.251 0.515 97 S 0.214 0.242 0.543 98 K 0.219 0.221 0.560 99 A 0.141 0.110 0.750 100 K 0.090 0.029 0.880 101 P 0.094 0.029 0.877 102 T 0.067 0.104 0.829 103 N 0.057 0.322 0.621 104 S 0.052 0.592 0.356 105 E 0.078 0.784 0.138 106 F 0.133 0.804 0.064 107 I 0.153 0.814 0.032 108 A 0.181 0.785 0.034 109 M 0.117 0.849 0.034 110 V 0.109 0.832 0.059 111 A 0.073 0.835 0.092 112 D 0.050 0.774 0.175 113 K 0.088 0.633 0.280 114 L 0.079 0.682 0.239 115 R 0.190 0.517 0.293 116 L 0.253 0.494 0.253 117 E 0.272 0.383 0.345 118 H 0.189 0.351 0.460 119 K 0.188 0.231 0.581 120 A 0.135 0.103 0.763 121 S 0.020 0.015 0.965