;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
; Sequence numbers correspond to the following labels:
; 1 T0097
; 2 gi|2507015|sp|P52555|ER29_RAT_156:260
; 3 gi|5803013|ref|NP_006808.1|_156:261
; 4 gi|7488158|pir||T00437_264:357
; 5 gi|7489183|pir||T03644_265:358
; 6 gi|2895202|gb|AAC02944.1|_148:257
; 7 gi|729442|sp|P38661|ERP5_MEDSA_270:362
; 8 gi|3928886|gb|AAC79709.1|_119:213
; 9 gi|2627440|gb|AAB86685.1|_267:361
; 10 gi|3287888|sp|O13811|PDI2_SCHPO_264:354
; 11 gi|2501209|sp|Q92249|ER38_NEUCR_265:364
; 12 gi|2501210|sp|Q00216|TIGA_ASPNG_264:354
; 13 gi|4650854|dbj|BAA77026.1|_6:46
              10        20        30        40         50        60    
              |         |         |         |          |         |    
   1 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDK.KWASQYLKIMGKILDQGEDFPAS
   2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDK.KWASQYLKIMGKILDQGEDFPAS
   3 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQK.KWAEQYLKIMGKILDQGEDFPAS
   4 GIVESLDALVKELVAASE-DEKKAVLSRIEEEASTLKGSTT.RYGKLYLKLAKSYIEKGSDYASK
   5 GIVESLDTLVNEFVSATN-EEKKAVFSKMEDEAGKLNGFAA.RYGKIYLKAAKSSMEKGADYAKN
   6 GCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQ.QNARAYLIYMRKIHEVGYDFLEE
   7 GIVEDLDELVKEFVAAND-EEKKAVFARIEEEVKKLEGSAS.RYGKIYLKVSKKYLEKGSDYAKN
   8 -TVKALMPIVEQFVKSS--EGREALVVEAEAIVPTLKPSEA.RVAKWYVKTMSSMQKKGENYLEK
   9 GRVEQLDTIATEFIAAAA-EVRKELVKKAQTVVDSLPEELR.IEGSYYVKVMKTIAEKSIDFVTT
  10 GRIPTFDEFAAEFLDMSN-AAKEVVLEKVKQLA---LEDSS.RWTKYYKKVFEKILN-DENWVHK
  11 GTIAALDEIVAKYTGGAS---LAEVAEEAKEAVKSLKNSAElKYADYYLRVLDK-LSKSEGYATK
  12 GTIASLDEL----IASTSAADLAAAVKKAATEL------KD.KYAQYYVKVADK-LSQNAEYAAK
  13 -----------------------------------------.-------------MEKGADYAKN


          70         80           90            100     
          |          |            |              |     
   1 ELARISKLI.ENKMSEGKKE...ELQRSLNILTAFR.....KKGAEKEEL
   2 ELARISKLI.ENKMSEGKKE...ELQRSLNILTAFR.....KKGAEKEEL
   3 EMTRIARLIeKNKMSDGKKE...ELQKSLNILTAFQ.....KKGAEKEEL
   4 ETERLGRVL.GKSISPVKAD...ELTLKRNILTTF-.....---------
   5 EIQRLERML.AKSISPAKSD...EFTLKKNILATF-.....---------
   6 ETKRLLRLK.AGKVTEAKKE...ELLRKLNILEVFRvhkvtKTAPEKEEL
   7 EIQRLERLL.EKSISPAKAD...ELTLKKNILST--.....---------
   8 EYERLNRML.QNQADSLKAEkltEFHDRLGVLQVF-.....---------
   9 EIARITKLV.SGSMSGKKAD...EFAKKLNILESFK.....---------
  10 EAKRLSKLLrQKSIALASAD...DFKTRLNILNSF-.....---------
  11 EFARLEGILkKGGLAPAKVD...ELTVKVNVLRKFV.....EKAAEE---
  12 ELARLEKILaKGGSAPEKVD...DLISRSNILRKF-.....-VGEEKE--
  13 EIQRLDRIL.SKAVSPAKAD...EFTLKKNILSTF-.....---------