# TARGET T0097 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0097.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9.69344 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 G 0.014 0.033 0.953 2 C 0.100 0.152 0.747 3 L 0.051 0.568 0.381 4 P 0.017 0.769 0.214 5 A 0.009 0.862 0.129 6 Y 0.002 0.952 0.045 7 D 0.003 0.949 0.048 8 A 0.002 0.967 0.031 9 L 0.002 0.977 0.022 10 A 0.003 0.969 0.028 11 G 0.004 0.964 0.032 12 Q 0.005 0.942 0.053 13 F 0.010 0.906 0.084 14 I 0.016 0.785 0.198 15 E 0.018 0.508 0.474 16 A 0.015 0.259 0.726 17 S 0.007 0.089 0.904 18 S 0.003 0.405 0.592 19 R 0.001 0.983 0.017 20 E 0.001 0.990 0.009 21 A 0.001 0.996 0.004 22 R 0.001 0.997 0.003 23 Q 0.001 0.998 0.001 24 A 0.001 0.999 0.001 25 I 0.001 0.999 0.001 26 L 0.001 0.999 0.001 27 K 0.001 0.998 0.002 28 Q 0.001 0.996 0.004 29 G 0.001 0.987 0.012 30 Q 0.001 0.981 0.019 31 D 0.001 0.963 0.036 32 G 0.003 0.898 0.099 33 L 0.005 0.806 0.189 34 S 0.007 0.676 0.317 35 G 0.010 0.551 0.439 36 V 0.020 0.246 0.734 37 K 0.015 0.108 0.877 38 E 0.007 0.688 0.305 39 T 0.007 0.761 0.232 40 D 0.010 0.836 0.153 41 K 0.018 0.851 0.131 42 K 0.019 0.922 0.059 43 W 0.014 0.945 0.041 44 A 0.010 0.967 0.024 45 S 0.004 0.990 0.007 46 Q 0.002 0.995 0.003 47 Y 0.004 0.994 0.002 48 L 0.003 0.996 0.001 49 K 0.002 0.997 0.002 50 I 0.002 0.996 0.003 51 M 0.001 0.994 0.005 52 G 0.001 0.990 0.009 53 K 0.001 0.979 0.020 54 I 0.005 0.932 0.063 55 L 0.007 0.908 0.086 56 D 0.012 0.826 0.162 57 Q 0.008 0.771 0.221 58 G 0.005 0.414 0.582 59 E 0.002 0.677 0.320 60 D 0.002 0.792 0.206 61 F 0.007 0.882 0.111 62 P 0.006 0.930 0.064 63 A 0.003 0.966 0.031 64 S 0.001 0.979 0.020 65 E 0.001 0.983 0.016 66 L 0.001 0.984 0.015 67 A 0.001 0.987 0.012 68 R 0.001 0.986 0.013 69 I 0.001 0.984 0.016 70 S 0.001 0.982 0.017 71 K 0.001 0.975 0.025 72 L 0.001 0.952 0.047 73 I 0.002 0.900 0.099 74 E 0.002 0.785 0.213 75 N 0.002 0.296 0.702 76 K 0.007 0.124 0.869 77 M 0.013 0.117 0.870 78 S 0.014 0.082 0.904 79 E 0.010 0.558 0.431 80 G 0.012 0.545 0.443 81 K 0.009 0.594 0.397 82 K 0.001 0.928 0.071 83 E 0.001 0.948 0.050 84 E 0.002 0.947 0.051 85 L 0.003 0.925 0.072 86 Q 0.006 0.922 0.072 87 R 0.002 0.939 0.058 88 S 0.003 0.916 0.082 89 L 0.002 0.818 0.180 90 N 0.007 0.249 0.744 91 I 0.029 0.663 0.307 92 L 0.037 0.782 0.181 93 T 0.022 0.908 0.070 94 A 0.021 0.927 0.051 95 F 0.021 0.930 0.050 96 R 0.010 0.947 0.044 97 K 0.006 0.922 0.071 98 K 0.003 0.893 0.104 99 G 0.004 0.284 0.712 100 A 0.007 0.626 0.367 101 E 0.013 0.651 0.336 102 K 0.023 0.522 0.455 103 E 0.060 0.365 0.574 104 E 0.041 0.182 0.777 105 L 0.005 0.008 0.987