# TARGET T0096 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0096.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 71.553 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.051 0.056 0.892 2 V 0.094 0.059 0.847 3 I 0.078 0.074 0.848 4 K 0.033 0.110 0.858 5 A 0.023 0.150 0.828 6 Q 0.024 0.210 0.766 7 S 0.015 0.449 0.536 8 P 0.002 0.945 0.053 9 A 0.001 0.982 0.017 10 G 0.001 0.993 0.006 11 F 0.001 0.996 0.004 12 A 0.001 0.998 0.002 13 E 0.001 0.998 0.002 14 E 0.001 0.998 0.002 15 Y 0.001 0.998 0.002 16 I 0.001 0.997 0.003 17 I 0.001 0.996 0.004 18 E 0.001 0.994 0.005 19 S 0.001 0.986 0.013 20 I 0.002 0.965 0.033 21 W 0.002 0.934 0.064 22 N 0.003 0.755 0.242 23 N 0.010 0.035 0.955 24 R 0.242 0.043 0.715 25 F 0.290 0.030 0.681 26 P 0.072 0.017 0.911 27 P 0.017 0.027 0.956 28 G 0.015 0.028 0.957 29 T 0.148 0.077 0.776 30 I 0.148 0.113 0.740 31 L 0.065 0.164 0.772 32 P 0.040 0.226 0.734 33 A 0.011 0.674 0.314 34 E 0.001 0.976 0.023 35 R 0.001 0.987 0.013 36 E 0.001 0.991 0.008 37 L 0.001 0.987 0.012 38 S 0.001 0.989 0.011 39 E 0.001 0.990 0.010 40 L 0.001 0.979 0.021 41 I 0.001 0.952 0.048 42 G 0.001 0.085 0.913 43 V 0.008 0.037 0.955 44 T 0.026 0.052 0.923 45 R 0.001 0.955 0.044 46 T 0.001 0.980 0.019 47 T 0.001 0.979 0.020 48 L 0.001 0.987 0.012 49 R 0.001 0.991 0.008 50 E 0.001 0.994 0.006 51 V 0.001 0.994 0.006 52 L 0.001 0.994 0.006 53 Q 0.001 0.996 0.004 54 R 0.001 0.993 0.007 55 L 0.001 0.991 0.008 56 A 0.001 0.984 0.016 57 R 0.001 0.970 0.029 58 D 0.002 0.906 0.092 59 G 0.012 0.026 0.962 60 W 0.333 0.032 0.636 61 L 0.780 0.028 0.192 62 T 0.896 0.015 0.088 63 I 0.847 0.014 0.140 64 Q 0.666 0.011 0.323 65 H 0.187 0.020 0.793 66 G 0.065 0.003 0.932 67 K 0.424 0.004 0.571 68 P 0.616 0.004 0.380 69 T 0.777 0.007 0.216 70 K 0.863 0.008 0.129 71 V 0.711 0.016 0.273 72 N 0.522 0.018 0.460 73 N 0.297 0.038 0.666 74 F 0.134 0.088 0.778 75 W 0.111 0.182 0.707 76 E 0.082 0.237 0.681 77 T 0.082 0.289 0.629 78 S 0.091 0.275 0.635 79 G 0.069 0.259 0.672 80 L 0.049 0.285 0.666 81 N 0.043 0.391 0.566 82 I 0.044 0.524 0.432 83 L 0.049 0.612 0.339 84 E 0.055 0.658 0.287 85 T 0.052 0.721 0.227 86 L 0.056 0.749 0.195 87 A 0.061 0.754 0.185 88 R 0.065 0.723 0.212 89 L 0.061 0.686 0.253 90 D 0.056 0.571 0.373 91 H 0.052 0.383 0.565 92 E 0.055 0.234 0.712 93 S 0.050 0.100 0.850 94 V 0.022 0.042 0.936 95 P 0.007 0.610 0.382 96 Q 0.007 0.669 0.324 97 L 0.008 0.688 0.304 98 I 0.002 0.940 0.058 99 D 0.002 0.950 0.048 100 N 0.001 0.966 0.033 101 L 0.001 0.977 0.022 102 L 0.002 0.982 0.016 103 S 0.002 0.983 0.016 104 V 0.001 0.987 0.012 105 R 0.001 0.987 0.012 106 T 0.001 0.987 0.012 107 N 0.001 0.986 0.013 108 I 0.002 0.973 0.025 109 S 0.002 0.963 0.035 110 T 0.001 0.979 0.020 111 I 0.001 0.971 0.027 112 F 0.002 0.974 0.024 113 I 0.001 0.974 0.025 114 R 0.002 0.974 0.024 115 T 0.002 0.958 0.039 116 A 0.004 0.920 0.077 117 F 0.004 0.844 0.151 118 R 0.010 0.500 0.490 119 Q 0.009 0.161 0.829 120 H 0.004 0.047 0.949 121 P 0.001 0.919 0.081 122 D 0.001 0.960 0.039 123 K 0.001 0.973 0.026 124 A 0.001 0.987 0.012 125 Q 0.001 0.991 0.008 126 E 0.001 0.993 0.007 127 V 0.001 0.992 0.008 128 L 0.001 0.990 0.010 129 A 0.001 0.990 0.010 130 T 0.001 0.983 0.017 131 A 0.001 0.967 0.032 132 N 0.001 0.962 0.037 133 E 0.001 0.942 0.057 134 V 0.002 0.902 0.096 135 A 0.002 0.847 0.151 136 D 0.002 0.560 0.438 137 H 0.003 0.391 0.606 138 A 0.002 0.856 0.143 139 D 0.002 0.924 0.074 140 A 0.002 0.955 0.043 141 F 0.004 0.933 0.063 142 A 0.007 0.920 0.073 143 E 0.007 0.901 0.092 144 L 0.008 0.775 0.218 145 D 0.006 0.796 0.198 146 Y 0.001 0.988 0.012 147 N 0.001 0.993 0.007 148 I 0.001 0.996 0.004 149 F 0.001 0.996 0.004 150 R 0.001 0.998 0.001 151 G 0.001 0.998 0.002 152 L 0.001 0.997 0.002 153 A 0.001 0.994 0.005 154 F 0.001 0.983 0.015 155 A 0.002 0.963 0.035 156 S 0.003 0.809 0.187 157 G 0.004 0.497 0.498 158 N 0.003 0.702 0.295 159 P 0.008 0.831 0.161 160 I 0.009 0.913 0.078 161 Y 0.008 0.959 0.033 162 G 0.005 0.980 0.015 163 L 0.003 0.985 0.013 164 I 0.003 0.983 0.014 165 L 0.002 0.979 0.019 166 N 0.002 0.967 0.031 167 G 0.002 0.946 0.052 168 M 0.002 0.929 0.069 169 K 0.002 0.869 0.129 170 G 0.003 0.829 0.168 171 L 0.012 0.841 0.147 172 Y 0.024 0.860 0.116 173 T 0.029 0.877 0.094 174 R 0.042 0.851 0.107 175 I 0.048 0.814 0.138 176 G 0.038 0.773 0.188 177 R 0.020 0.795 0.185 178 H 0.030 0.722 0.248 179 Y 0.052 0.614 0.334 180 F 0.053 0.477 0.470 181 A 0.032 0.432 0.536 182 N 0.022 0.513 0.464 183 P 0.029 0.619 0.352 184 E 0.041 0.625 0.334 185 A 0.047 0.589 0.364 186 R 0.034 0.608 0.358 187 S 0.020 0.744 0.236 188 L 0.019 0.776 0.205 189 A 0.033 0.738 0.229 190 L 0.039 0.733 0.228 191 G 0.046 0.662 0.292 192 F 0.047 0.620 0.333 193 Y 0.031 0.545 0.424 194 H 0.027 0.419 0.554 195 K 0.020 0.431 0.549 196 L 0.037 0.437 0.526 197 S 0.042 0.530 0.429 198 A 0.018 0.850 0.132 199 L 0.012 0.920 0.068 200 C 0.007 0.955 0.038 201 S 0.006 0.963 0.031 202 E 0.002 0.983 0.015 203 G 0.001 0.989 0.010 204 A 0.001 0.992 0.008 205 H 0.001 0.994 0.006 206 D 0.001 0.997 0.003 207 Q 0.001 0.998 0.002 208 V 0.001 0.999 0.001 209 Y 0.001 0.999 0.001 210 E 0.001 0.998 0.002 211 T 0.001 0.997 0.003 212 V 0.001 0.990 0.008 213 R 0.001 0.975 0.023 214 R 0.002 0.919 0.079 215 Y 0.001 0.583 0.416 216 G 0.001 0.064 0.935 217 H 0.001 0.951 0.049 218 E 0.001 0.988 0.011 219 S 0.001 0.995 0.005 220 G 0.001 0.995 0.005 221 E 0.001 0.997 0.003 222 I 0.001 0.997 0.003 223 W 0.001 0.997 0.003 224 H 0.001 0.993 0.007 225 R 0.001 0.993 0.007 226 M 0.001 0.988 0.011 227 Q 0.001 0.973 0.027 228 K 0.001 0.976 0.023 229 N 0.001 0.973 0.027 230 L 0.001 0.980 0.020 231 P 0.001 0.979 0.020 232 G 0.001 0.984 0.016 233 D 0.001 0.983 0.016 234 L 0.004 0.964 0.032 235 A 0.010 0.937 0.053 236 I 0.013 0.881 0.106 237 Q 0.030 0.691 0.279 238 G 0.045 0.293 0.662 239 R 0.013 0.044 0.943