PFRMAT SS
TARGET T0096
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0096.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 71.553
METHOD
MODEL 1
M C 0.892
V C 0.847
I C 0.848
K C 0.858
A C 0.828
Q C 0.766
S C 0.536
P H 0.945
A H 0.982
G H 0.993
F H 0.996
A H 0.998
E H 0.998
E H 0.998
Y H 0.998
I H 0.997
I H 0.996
E H 0.994
S H 0.986
I H 0.965
W H 0.934
N H 0.755
N C 0.955
R C 0.715
F C 0.681
P C 0.911
P C 0.956
G C 0.957
T C 0.776
I C 0.740
L C 0.772
P C 0.734
A H 0.674
E H 0.976
R H 0.987
E H 0.991
L H 0.987
S H 0.989
E H 0.990
L H 0.979
I H 0.952
G C 0.913
V C 0.955
T C 0.923
R H 0.955
T H 0.980
T H 0.979
L H 0.987
R H 0.991
E H 0.994
V H 0.994
L H 0.994
Q H 0.996
R H 0.993
L H 0.991
A H 0.984
R H 0.970
D H 0.906
G C 0.962
W C 0.636
L E 0.780
T E 0.896
I E 0.847
Q E 0.666
H C 0.793
G C 0.932
K C 0.571
P E 0.616
T E 0.777
K E 0.863
V E 0.711
N E 0.522
N C 0.666
F C 0.778
W C 0.707
E C 0.681
T C 0.629
S C 0.635
G C 0.672
L C 0.666
N C 0.566
I H 0.524
L H 0.612
E H 0.658
T H 0.721
L H 0.749
A H 0.754
R H 0.723
L H 0.686
D H 0.571
H C 0.565
E C 0.712
S C 0.850
V C 0.936
P H 0.610
Q H 0.669
L H 0.688
I H 0.940
D H 0.950
N H 0.966
L H 0.977
L H 0.982
S H 0.983
V H 0.987
R H 0.987
T H 0.987
N H 0.986
I H 0.973
S H 0.963
T H 0.979
I H 0.971
F H 0.974
I H 0.974
R H 0.974
T H 0.958
A H 0.920
F H 0.844
R H 0.500
Q C 0.829
H C 0.949
P H 0.919
D H 0.960
K H 0.973
A H 0.987
Q H 0.991
E H 0.993
V H 0.992
L H 0.990
A H 0.990
T H 0.983
A H 0.967
N H 0.962
E H 0.942
V H 0.902
A H 0.847
D H 0.560
H C 0.606
A H 0.856
D H 0.924
A H 0.955
F H 0.933
A H 0.920
E H 0.901
L H 0.775
D H 0.796
Y H 0.988
N H 0.993
I H 0.996
F H 0.996
R H 0.998
G H 0.998
L H 0.997
A H 0.994
F H 0.983
A H 0.963
S H 0.809
G C 0.498
N H 0.702
P H 0.831
I H 0.913
Y H 0.959
G H 0.980
L H 0.985
I H 0.983
L H 0.979
N H 0.967
G H 0.946
M H 0.929
K H 0.869
G H 0.829
L H 0.841
Y H 0.860
T H 0.877
R H 0.851
I H 0.814
G H 0.773
R H 0.795
H H 0.722
Y H 0.614
F H 0.477
A C 0.536
N H 0.513
P H 0.619
E H 0.625
A H 0.589
R H 0.608
S H 0.744
L H 0.776
A H 0.738
L H 0.733
G H 0.662
F H 0.620
Y H 0.545
H C 0.554
K C 0.549
L C 0.526
S H 0.530
A H 0.850
L H 0.920
C H 0.955
S H 0.963
E H 0.983
G H 0.989
A H 0.992
H H 0.994
D H 0.997
Q H 0.998
V H 0.999
Y H 0.999
E H 0.998
T H 0.997
V H 0.990
R H 0.975
R H 0.919
Y H 0.583
G C 0.935
H H 0.951
E H 0.988
S H 0.995
G H 0.995
E H 0.997
I H 0.997
W H 0.997
H H 0.993
R H 0.993
M H 0.988
Q H 0.973
K H 0.976
N H 0.973
L H 0.980
P H 0.979
G H 0.984
D H 0.983
L H 0.964
A H 0.937
I H 0.881
Q H 0.691
G C 0.662
R C 0.943
END