# TARGET T0095 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0095.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13.5837 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 D 0.060 0.165 0.775 2 H 0.180 0.154 0.666 3 V 0.292 0.211 0.496 4 S 0.256 0.205 0.539 5 D 0.046 0.820 0.134 6 S 0.032 0.814 0.153 7 F 0.034 0.848 0.118 8 L 0.033 0.796 0.171 9 E 0.019 0.834 0.146 10 T 0.013 0.831 0.156 11 N 0.018 0.680 0.302 12 V 0.025 0.859 0.115 13 P 0.005 0.976 0.019 14 L 0.001 0.993 0.005 15 L 0.001 0.998 0.002 16 V 0.001 0.998 0.002 17 L 0.001 0.997 0.002 18 I 0.001 0.996 0.003 19 E 0.001 0.994 0.006 20 A 0.001 0.982 0.017 21 A 0.002 0.935 0.063 22 K 0.003 0.797 0.199 23 N 0.003 0.367 0.630 24 G 0.004 0.050 0.946 25 N 0.010 0.082 0.908 26 E 0.001 0.909 0.090 27 K 0.001 0.943 0.057 28 E 0.001 0.971 0.028 29 V 0.002 0.972 0.026 30 K 0.003 0.972 0.025 31 E 0.002 0.981 0.017 32 Y 0.001 0.978 0.021 33 A 0.001 0.978 0.021 34 Q 0.001 0.973 0.026 35 V 0.001 0.969 0.029 36 F 0.001 0.973 0.025 37 R 0.001 0.981 0.018 38 E 0.001 0.986 0.014 39 H 0.001 0.986 0.014 40 A 0.001 0.983 0.016 41 N 0.001 0.987 0.013 42 K 0.001 0.992 0.008 43 L 0.001 0.994 0.006 44 I 0.001 0.996 0.004 45 E 0.001 0.998 0.002 46 V 0.001 0.996 0.004 47 A 0.001 0.995 0.004 48 N 0.001 0.992 0.007 49 L 0.002 0.980 0.018 50 A 0.005 0.949 0.046 51 C 0.009 0.783 0.207 52 S 0.020 0.522 0.458 53 I 0.051 0.288 0.662 54 S 0.046 0.066 0.887 55 N 0.034 0.067 0.899 56 N 0.024 0.056 0.920 57 E 0.023 0.577 0.399 58 E 0.015 0.813 0.172 59 G 0.016 0.926 0.057 60 V 0.013 0.966 0.020 61 K 0.007 0.987 0.006 62 L 0.005 0.993 0.003 63 V 0.003 0.995 0.002 64 R 0.002 0.996 0.003 65 M 0.001 0.996 0.003 66 S 0.001 0.992 0.008 67 A 0.001 0.992 0.007 68 S 0.001 0.991 0.008 69 Q 0.001 0.983 0.017 70 L 0.001 0.984 0.016 71 E 0.001 0.986 0.013 72 A 0.001 0.991 0.009 73 L 0.001 0.991 0.008 74 C 0.001 0.992 0.008 75 P 0.001 0.994 0.006 76 Q 0.001 0.996 0.003 77 V 0.001 0.997 0.002 78 I 0.001 0.999 0.001 79 N 0.001 0.999 0.001 80 A 0.001 0.997 0.002 81 A 0.002 0.993 0.004 82 L 0.005 0.987 0.008 83 A 0.010 0.966 0.023 84 L 0.026 0.915 0.059 85 A 0.036 0.804 0.160 86 A 0.033 0.497 0.471 87 K 0.008 0.035 0.957 88 P 0.008 0.178 0.813 89 Q 0.013 0.242 0.744 90 S 0.010 0.452 0.539 91 K 0.005 0.813 0.182 92 L 0.004 0.902 0.094 93 A 0.005 0.911 0.084 94 Q 0.003 0.953 0.044 95 E 0.002 0.944 0.054 96 N 0.002 0.893 0.105 97 M 0.002 0.952 0.046 98 D 0.002 0.970 0.028 99 L 0.002 0.980 0.018 100 F 0.001 0.993 0.007 101 K 0.001 0.993 0.006 102 E 0.001 0.995 0.005 103 Q 0.001 0.994 0.006 104 W 0.001 0.991 0.009 105 E 0.001 0.995 0.005 106 K 0.001 0.996 0.004 107 Q 0.001 0.994 0.006 108 V 0.001 0.994 0.006 109 R 0.001 0.992 0.008 110 V 0.001 0.992 0.008 111 L 0.001 0.987 0.013 112 T 0.001 0.982 0.018 113 D 0.001 0.984 0.015 114 A 0.001 0.961 0.038 115 V 0.004 0.933 0.063 116 D 0.008 0.887 0.105 117 D 0.013 0.836 0.152 118 I 0.026 0.709 0.265 119 T 0.088 0.237 0.675 120 S 0.028 0.068 0.905 121 I 0.003 0.917 0.080 122 D 0.001 0.948 0.050 123 D 0.001 0.962 0.037 124 F 0.010 0.916 0.074 125 L 0.020 0.904 0.076 126 A 0.011 0.922 0.067 127 V 0.005 0.929 0.066 128 S 0.003 0.915 0.082 129 E 0.001 0.995 0.005 130 N 0.001 0.997 0.003 131 H 0.001 0.997 0.003 132 I 0.001 0.997 0.003 133 L 0.001 0.997 0.003 134 E 0.001 0.996 0.004 135 D 0.001 0.993 0.007 136 V 0.001 0.990 0.010 137 N 0.001 0.991 0.009 138 K 0.001 0.988 0.012 139 C 0.001 0.986 0.013 140 V 0.001 0.991 0.008 141 I 0.001 0.989 0.010 142 A 0.003 0.978 0.020 143 L 0.005 0.944 0.051 144 Q 0.008 0.842 0.150 145 E 0.005 0.776 0.219 146 K 0.018 0.278 0.704 147 D 0.016 0.108 0.877 148 V 0.008 0.707 0.285 149 D 0.015 0.782 0.204 150 G 0.018 0.833 0.148 151 L 0.041 0.766 0.193 152 D 0.048 0.738 0.214 153 R 0.020 0.779 0.201 154 T 0.008 0.795 0.198 155 A 0.006 0.905 0.088 156 G 0.005 0.943 0.052 157 A 0.007 0.944 0.050 158 I 0.011 0.932 0.056 159 R 0.006 0.948 0.046 160 G 0.004 0.961 0.036 161 R 0.001 0.976 0.022 162 A 0.002 0.958 0.040 163 A 0.002 0.982 0.016 164 R 0.002 0.991 0.007 165 V 0.005 0.993 0.002 166 I 0.005 0.994 0.001 167 H 0.005 0.994 0.001 168 V 0.003 0.996 0.001 169 V 0.004 0.992 0.004 170 T 0.002 0.990 0.008 171 S 0.001 0.986 0.013 172 E 0.002 0.933 0.064 173 M 0.004 0.815 0.180 174 D 0.013 0.674 0.313 175 N 0.022 0.433 0.545 176 Y 0.019 0.220 0.761 177 E 0.013 0.214 0.773 178 P 0.013 0.173 0.814 179 G 0.026 0.270 0.704 180 V 0.081 0.503 0.416 181 Y 0.101 0.719 0.180 182 T 0.044 0.877 0.079 183 E 0.010 0.963 0.027 184 K 0.004 0.977 0.019 185 V 0.002 0.990 0.009 186 L 0.001 0.994 0.006 187 E 0.001 0.993 0.006 188 A 0.001 0.988 0.011 189 T 0.001 0.986 0.014 190 K 0.001 0.979 0.020 191 L 0.001 0.971 0.028 192 L 0.003 0.938 0.060 193 S 0.003 0.905 0.093 194 N 0.004 0.826 0.170 195 T 0.011 0.731 0.259 196 V 0.020 0.503 0.478 197 M 0.018 0.423 0.559 198 P 0.009 0.275 0.717 199 R 0.004 0.797 0.200 200 F 0.003 0.908 0.089 201 T 0.001 0.973 0.026 202 E 0.001 0.992 0.007 203 Q 0.001 0.995 0.004 204 V 0.001 0.997 0.003 205 E 0.001 0.997 0.002 206 A 0.001 0.996 0.003 207 A 0.002 0.993 0.005 208 V 0.003 0.981 0.016 209 E 0.004 0.953 0.043 210 A 0.006 0.815 0.180 211 L 0.014 0.519 0.467 212 S 0.011 0.354 0.635 213 S 0.012 0.138 0.850 214 D 0.010 0.153 0.837 215 P 0.011 0.172 0.817 216 A 0.011 0.190 0.799 217 Q 0.010 0.168 0.823 218 P 0.006 0.655 0.338 219 M 0.009 0.717 0.274 220 D 0.010 0.755 0.235 221 E 0.013 0.770 0.217 222 N 0.024 0.721 0.255 223 E 0.037 0.699 0.265 224 F 0.075 0.513 0.413 225 I 0.120 0.462 0.418 226 D 0.071 0.460 0.468 227 A 0.010 0.741 0.249 228 S 0.012 0.712 0.276 229 R 0.017 0.838 0.145 230 L 0.023 0.876 0.101 231 V 0.034 0.885 0.081 232 Y 0.012 0.927 0.061 233 D 0.003 0.954 0.043 234 G 0.003 0.960 0.037 235 I 0.006 0.968 0.026 236 R 0.012 0.959 0.029 237 D 0.015 0.945 0.040 238 I 0.037 0.865 0.097 239 R 0.030 0.840 0.131 240 K 0.071 0.727 0.201 241 A 0.215 0.686 0.099 242 V 0.607 0.250 0.143 243 L 0.635 0.108 0.257 244 M 0.156 0.022 0.822