PFRMAT SS
TARGET T0095
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0095.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 13.5837
METHOD
MODEL 1
D C 0.775
H C 0.666
V C 0.496
S C 0.539
D H 0.820
S H 0.814
F H 0.848
L H 0.796
E H 0.834
T H 0.831
N H 0.680
V H 0.859
P H 0.976
L H 0.993
L H 0.998
V H 0.998
L H 0.997
I H 0.996
E H 0.994
A H 0.982
A H 0.935
K H 0.797
N C 0.630
G C 0.946
N C 0.908
E H 0.909
K H 0.943
E H 0.971
V H 0.972
K H 0.972
E H 0.981
Y H 0.978
A H 0.978
Q H 0.973
V H 0.969
F H 0.973
R H 0.981
E H 0.986
H H 0.986
A H 0.983
N H 0.987
K H 0.992
L H 0.994
I H 0.996
E H 0.998
V H 0.996
A H 0.995
N H 0.992
L H 0.980
A H 0.949
C H 0.783
S H 0.522
I C 0.662
S C 0.887
N C 0.899
N C 0.920
E H 0.577
E H 0.813
G H 0.926
V H 0.966
K H 0.987
L H 0.993
V H 0.995
R H 0.996
M H 0.996
S H 0.992
A H 0.992
S H 0.991
Q H 0.983
L H 0.984
E H 0.986
A H 0.991
L H 0.991
C H 0.992
P H 0.994
Q H 0.996
V H 0.997
I H 0.999
N H 0.999
A H 0.997
A H 0.993
L H 0.987
A H 0.966
L H 0.915
A H 0.804
A H 0.497
K C 0.957
P C 0.813
Q C 0.744
S C 0.539
K H 0.813
L H 0.902
A H 0.911
Q H 0.953
E H 0.944
N H 0.893
M H 0.952
D H 0.970
L H 0.980
F H 0.993
K H 0.993
E H 0.995
Q H 0.994
W H 0.991
E H 0.995
K H 0.996
Q H 0.994
V H 0.994
R H 0.992
V H 0.992
L H 0.987
T H 0.982
D H 0.984
A H 0.961
V H 0.933
D H 0.887
D H 0.836
I H 0.709
T C 0.675
S C 0.905
I H 0.917
D H 0.948
D H 0.962
F H 0.916
L H 0.904
A H 0.922
V H 0.929
S H 0.915
E H 0.995
N H 0.997
H H 0.997
I H 0.997
L H 0.997
E H 0.996
D H 0.993
V H 0.990
N H 0.991
K H 0.988
C H 0.986
V H 0.991
I H 0.989
A H 0.978
L H 0.944
Q H 0.842
E H 0.776
K C 0.704
D C 0.877
V H 0.707
D H 0.782
G H 0.833
L H 0.766
D H 0.738
R H 0.779
T H 0.795
A H 0.905
G H 0.943
A H 0.944
I H 0.932
R H 0.948
G H 0.961
R H 0.976
A H 0.958
A H 0.982
R H 0.991
V H 0.993
I H 0.994
H H 0.994
V H 0.996
V H 0.992
T H 0.990
S H 0.986
E H 0.933
M H 0.815
D H 0.674
N C 0.545
Y C 0.761
E C 0.773
P C 0.814
G C 0.704
V H 0.503
Y H 0.719
T H 0.877
E H 0.963
K H 0.977
V H 0.990
L H 0.994
E H 0.993
A H 0.988
T H 0.986
K H 0.979
L H 0.971
L H 0.938
S H 0.905
N H 0.826
T H 0.731
V H 0.503
M C 0.559
P C 0.717
R H 0.797
F H 0.908
T H 0.973
E H 0.992
Q H 0.995
V H 0.997
E H 0.997
A H 0.996
A H 0.993
V H 0.981
E H 0.953
A H 0.815
L H 0.519
S C 0.635
S C 0.850
D C 0.837
P C 0.817
A C 0.799
Q C 0.823
P H 0.655
M H 0.717
D H 0.755
E H 0.770
N H 0.721
E H 0.699
F H 0.513
I H 0.462
D C 0.468
A H 0.741
S H 0.712
R H 0.838
L H 0.876
V H 0.885
Y H 0.927
D H 0.954
G H 0.960
I H 0.968
R H 0.959
D H 0.945
I H 0.865
R H 0.840
K H 0.727
A H 0.686
V E 0.607
L E 0.635
M C 0.822
END