make: Nothing to be done for `joints'. make -k PRED=1yghA PRED2=1y joint make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t94' /projects/compbio/bin/scripts/w0.5 /projects/compbio/experiments/models.97/pdb/1y/1yghA/struct-align/1yghA.fssp.a2m.gz /projects/compbio/experiments/models.97/pdb/1y/1yghA/struct-align/1yghA.fssp-w0.5.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1y/1yghA/struct-align/1yghA.fssp.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50 Reading alignment file /projects/compbio/experiments/models.97/pdb/1y/1yghA/struct-align/1yghA.fssp.a2m.gz (13 sequences, 164 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp.a2m. Dropping 2 (of 13) duplicate sequences with differing IDs Dropping 3 (of 13) sequences with > 80.0% id 8 sequences left after dropping 5 of 13 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp.a2m (8 sequences, 164 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290/tmp.mod /projects/compbio/experiments/models.97/pdb/1y/1yghA/struct-align/1yghA.fssp-w0.5.mod @@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10290