; SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15 ; (c) 1992-1999 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ------ Citations (HMMs, SAM) ------ ; A. Krogh et al., Hidden Markov models in computational biology: ; ------------- Citations (SAM, SAM-T99, HMMs) ----------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1999. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; -------------------------------------------------------------- ; Sequence numbers correspond to the following labels: ; 1 T0094 ; 2 gi|7484882|pir||T05030_1:181 ; 3 gi|7484883|pir||T05031_17:189 10 20 30 40 50 60 | | | | | | 1 MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVT.VAVSAY.LTADEAKKMFESA 2 MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVT.VAVSAY.LTADEAKKMFESA 3 DDEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLTlVGPFPYkLTASEAKRMFKSA 70 80 90 100 110 120 1 | | | | | | 1 CDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELT 2 CDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELT 3 CEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAGHFMAHFKPFTGKFYVPHMSILYGDLT 30 140 150 160 170 180 | | | | | | 1 EEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNP 2 EEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNP 3 EREKKKALEKAYTLDSSLDGLNFKINRVALWITDAD---VGSWVKV-------