PFRMAT SS
TARGET T0094
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0094.remote-t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6.38294
METHOD
MODEL 1
M C 0.74
E H 0.69
E H 0.77
V H 0.77
K H 0.77
K H 0.71
D H 0.56
V H 0.44
Y E 0.49
S E 0.63
V E 0.71
W E 0.66
A C 0.47
L C 0.77
P C 0.92
D C 0.57
E H 0.55
E H 0.61
S H 0.63
E H 0.82
P H 0.90
R H 0.94
F H 0.98
K H 0.99
K H 0.99
L H 0.99
M H 0.98
E H 0.98
A H 0.97
L H 0.94
R H 0.93
S H 0.88
E H 0.78
F C 0.55
T C 0.74
G C 0.90
P C 0.86
R C 0.70
F C 0.54
V C 0.62
P C 0.71
H C 0.64
V E 0.64
T E 0.77
V E 0.82
A E 0.69
V E 0.57
S C 0.56
A C 0.56
Y C 0.48
L C 0.61
T C 0.80
A H 0.68
D H 0.79
E H 0.92
A H 0.95
K H 0.98
K H 0.99
M H 0.99
F H 0.99
E H 0.99
S H 0.98
A H 0.94
C H 0.86
D H 0.68
G C 0.49
L C 0.49
K E 0.56
A E 0.58
Y C 0.60
T C 0.63
A E 0.51
T E 0.66
V E 0.52
D C 0.49
R C 0.46
V E 0.50
S C 0.46
T C 0.67
G C 0.69
T C 0.50
F E 0.40
F E 0.56
F E 0.67
Q E 0.72
C E 0.81
V E 0.89
F E 0.89
L E 0.85
L E 0.82
L E 0.53
Q C 0.65
T C 0.63
T C 0.52
P H 0.64
E H 0.74
V H 0.78
M H 0.84
E H 0.84
A H 0.84
G H 0.66
E H 0.66
H H 0.69
C H 0.59
K H 0.69
N H 0.73
H H 0.66
F C 0.37
N E 0.45
C C 0.40
S C 0.62
T C 0.81
T C 0.82
T C 0.53
P E 0.57
Y E 0.61
M C 0.68
P C 0.86
H C 0.92
L H 0.88
S H 0.92
L H 0.91
L H 0.83
Y H 0.78
A H 0.56
E C 0.59
L C 0.79
T C 0.87
E H 0.97
E H 0.96
E H 0.97
K H 0.94
K H 0.95
N H 0.93
A H 0.91
Q H 0.88
E H 0.88
K H 0.84
A H 0.76
Y H 0.52
T C 0.41
L C 0.47
D C 0.68
S C 0.78
S C 0.84
L C 0.93
D C 0.90
G C 0.80
L C 0.68
S C 0.52
F E 0.51
R E 0.61
L E 0.64
N E 0.63
R E 0.65
L E 0.64
A E 0.72
L E 0.78
C E 0.66
K E 0.48
T C 0.74
D C 0.86
T C 0.87
E C 0.83
D C 0.72
K C 0.75
T C 0.69
L C 0.64
E C 0.68
T C 0.62
W C 0.40
E E 0.53
T E 0.61
V E 0.71
A E 0.80
V E 0.77
C E 0.69
N C 0.56
L C 0.76
N C 0.92
P C 0.98
END