hmmscore T0094.t2k-2track \
	-trackmod T0094.t2k-w0.5.mod,T0094.t2k-2d.mod \
	-db /projects/compbio/experiments/test-set/fold-recognition-test/fssp-test-00/fssp-in-scop.seqs,/projects/compbio/experiments/test-set/fold-recognition-test/fssp-test-00/fssp-in-scop.2ds \
	-alphabet protein,EHL2 \
	-trackcoeff 0.5,0.5 \
	-sw 2 -dpstyle 0 \
	-select_score 4 -Emax 40.
SAM: hmmscore v3.2 (July 31, 2000) compiled 07/31/00_14:08:17
T0094.t2k-w0.5.mod(23):  Reading track 0 model from MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-188/tmp.a2m
T0094.t2k-2d.mod(1109):  Reading track 1 model from MODEL -- Model from 2nd structure file T0094.t2k.2d.rdb
Calculating Distances (. = 1000 sequences)
..
Average NLL-Simple NULL score:        -11.213199
Database has 1997 sequences with 465801 residues.