make -k PRED=1rkd PRED2=1r joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1r/1rkd/struct-align/1rkd.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1d8cA PRED2=1d joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1d/1d8cA/struct-align/1d8cA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1bhgA PRED2=1b joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1bhgA/struct-align/1bhgA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1c8sA PRED2=1c joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1c/1c8sA/struct-align/1c8sA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1c/1c8sA/info/1c8sA.stride-mixed.seq Don't know how to make /projects/compbio/experiments/models.97/pdb/1c/1c8sA/nostruct-align/1c8sA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1c3wA PRED2=1c joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1c/1c3wA/struct-align/1c3wA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1ede PRED2=1e joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1e/1ede/struct-align/1ede.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=2ercA PRED2=2e joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/2e/2ercA/struct-align/2ercA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1qorA PRED2=1q joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1q/1qorA/struct-align/1qorA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1pedA PRED2=1p joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1p/1pedA/struct-align/1pedA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=2ohxA PRED2=2o joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/2o/2ohxA/struct-align/2ohxA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1fmtA PRED2=1f joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1f/1fmtA/struct-align/1fmtA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1qr6A PRED2=1q joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1q/1qr6A/struct-align/1qr6A.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1a4iA PRED2=1a joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1a/1a4iA/struct-align/1a4iA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1af7 PRED2=1a joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1a/1af7/struct-align/1af7.fssp.a2m make 1af7 Multiple rules lines for `%.seq.gz' Don't know how to make 1af7 hmmscore 1af7/T0093-1af7-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99.a2m make 1af7 Multiple rules lines for `%.seq.gz' Don't know how to make 1af7 hmmscore 1af7/T0093-1af7-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1af7 Multiple rules lines for `%.seq.gz' Don't know how to make 1af7 hmmscore 1af7/T0093-1af7-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1a/1af7/info/1af7.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1bj4A PRED2=1b joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1bj4A/struct-align/1bj4A.fssp.a2m make 1bj4A Multiple rules lines for `%.seq.gz' Don't know how to make 1bj4A hmmscore 1bj4A/T0093-1bj4A-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99.a2m make 1bj4A Multiple rules lines for `%.seq.gz' Don't know how to make 1bj4A hmmscore 1bj4A/T0093-1bj4A-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1bj4A Multiple rules lines for `%.seq.gz' Don't know how to make 1bj4A hmmscore 1bj4A/T0093-1bj4A-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bj4A/info/1bj4A.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1booA PRED2=1b joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1booA/struct-align/1booA.fssp.a2m make 1booA Multiple rules lines for `%.seq.gz' Don't know how to make 1booA hmmscore 1booA/T0093-1booA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99.a2m make 1booA Multiple rules lines for `%.seq.gz' Don't know how to make 1booA hmmscore 1booA/T0093-1booA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1booA Multiple rules lines for `%.seq.gz' Don't know how to make 1booA hmmscore 1booA/T0093-1booA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1b/1booA/info/1booA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1mgtA PRED2=1m joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1m/1mgtA/struct-align/1mgtA.fssp.a2m make 1mgtA Multiple rules lines for `%.seq.gz' Don't know how to make 1mgtA hmmscore 1mgtA/T0093-1mgtA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99.a2m make 1mgtA Multiple rules lines for `%.seq.gz' Don't know how to make 1mgtA hmmscore 1mgtA/T0093-1mgtA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1mgtA Multiple rules lines for `%.seq.gz' Don't know how to make 1mgtA hmmscore 1mgtA/T0093-1mgtA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1sfe PRED2=1s joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1s/1sfe/struct-align/1sfe.fssp.a2m make 1sfe Multiple rules lines for `%.seq.gz' Don't know how to make 1sfe hmmscore 1sfe/T0093-1sfe-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99.a2m make 1sfe Multiple rules lines for `%.seq.gz' Don't know how to make 1sfe hmmscore 1sfe/T0093-1sfe-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1sfe Multiple rules lines for `%.seq.gz' Don't know how to make 1sfe hmmscore 1sfe/T0093-1sfe-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1s/1sfe/info/1sfe.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1vid PRED2=1v joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1v/1vid/struct-align/1vid.fssp.a2m make 1vid Multiple rules lines for `%.seq.gz' Don't know how to make 1vid hmmscore 1vid/T0093-1vid-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99.a2m make 1vid Multiple rules lines for `%.seq.gz' Don't know how to make 1vid hmmscore 1vid/T0093-1vid-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1vid Multiple rules lines for `%.seq.gz' Don't know how to make 1vid hmmscore 1vid/T0093-1vid-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1v/1vid/info/1vid.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=1xvaA PRED2=1x joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/1x/1xvaA/struct-align/1xvaA.fssp.a2m make 1xvaA Multiple rules lines for `%.seq.gz' Don't know how to make 1xvaA hmmscore 1xvaA/T0093-1xvaA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99.a2m make 1xvaA Multiple rules lines for `%.seq.gz' Don't know how to make 1xvaA hmmscore 1xvaA/T0093-1xvaA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 1xvaA Multiple rules lines for `%.seq.gz' Don't know how to make 1xvaA hmmscore 1xvaA/T0093-1xvaA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/1x/1xvaA/info/1xvaA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=2admA PRED2=2a joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/2a/2admA/struct-align/2admA.fssp.a2m make 2admA Multiple rules lines for `%.seq.gz' Don't know how to make 2admA hmmscore 2admA/T0093-2admA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m make 2admA Multiple rules lines for `%.seq.gz' Don't know how to make 2admA hmmscore 2admA/T0093-2admA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 2admA Multiple rules lines for `%.seq.gz' Don't know how to make 2admA hmmscore 2admA/T0093-2admA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2a/2admA/info/2admA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=2dpmA PRED2=2d joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/2d/2dpmA/struct-align/2dpmA.fssp.a2m make 2dpmA Multiple rules lines for `%.seq.gz' Don't know how to make 2dpmA hmmscore 2dpmA/T0093-2dpmA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99.a2m make 2dpmA Multiple rules lines for `%.seq.gz' Don't know how to make 2dpmA hmmscore 2dpmA/T0093-2dpmA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 2dpmA Multiple rules lines for `%.seq.gz' Don't know how to make 2dpmA hmmscore 2dpmA/T0093-2dpmA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=2ercA PRED2=2e joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/2e/2ercA/struct-align/2ercA.fssp.a2m Don't know how to make /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99.a2m Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors make -k PRED=6mhtA PRED2=6m joint Multiple rules lines for `%.seq.gz' Don't know how to make /projects/compbio/experiments/models.97/pdb/6m/6mhtA/struct-align/6mhtA.fssp.a2m make 6mhtA Multiple rules lines for `%.seq.gz' Don't know how to make 6mhtA hmmscore 6mhtA/T0093-6mhtA-local.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride.seq -adpstyle 5 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99.a2m make 6mhtA Multiple rules lines for `%.seq.gz' Don't know how to make 6mhtA hmmscore 6mhtA/T0093-6mhtA-vit.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride.seq -viterbi 1 -sw 2 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 make 6mhtA Multiple rules lines for `%.seq.gz' Don't know how to make 6mhtA hmmscore 6mhtA/T0093-6mhtA-global.pw -i -db T0093.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride-mixed.seq -db /projects/compbio/experiments/models.97/pdb/6m/6mhtA/info/6mhtA.stride.seq -adpstyle 5 -sw 0 -subtract_null 4 -simplethreshold 1 -select_align 8 Error: Couldn't open file -db: No such file or directory *** Exit 1 Don't know how to make yyy/xxxx.a2m `joint' not remade because of errors