PFRMAT SS
TARGET T0093
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0093.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 48.1181
METHOD
MODEL 1
M C 0.95
L E 0.61
D E 0.93
I E 0.99
V E 0.99
L E 0.96
Y E 0.74
E C 0.69
P C 0.76
E C 0.79
I C 0.93
P C 0.89
Q C 0.82
N C 0.55
T H 0.96
G H 0.99
N H 1.00
I H 1.00
I H 1.00
R H 1.00
L H 1.00
C H 1.00
A H 0.99
N H 0.97
T H 0.68
G C 0.98
F C 0.95
R E 0.53
L E 0.90
H E 0.97
L E 0.97
I E 0.87
E C 0.52
P C 0.86
L C 0.81
G C 0.69
F C 0.72
T C 0.70
W C 0.73
D C 0.73
D C 0.70
K H 0.73
R H 0.75
L H 0.76
R H 0.77
R H 0.79
S H 0.76
G H 0.62
L C 0.60
D C 0.65
Y C 0.52
H C 0.48
E C 0.45
F C 0.47
A C 0.51
E C 0.55
I E 0.59
K E 0.70
R E 0.68
H C 0.50
K C 0.75
T C 0.87
F H 0.97
E H 0.97
A H 0.97
F H 0.94
L H 0.93
E H 0.89
S H 0.83
E H 0.57
K C 0.59
P C 0.72
K C 0.81
R C 0.75
L E 0.76
F E 0.92
A E 0.95
L E 0.92
T E 0.79
T C 0.51
K C 0.87
G C 0.91
C C 0.81
P C 0.73
A C 0.70
H C 0.48
S C 0.48
Q C 0.50
V C 0.71
K C 0.75
F C 0.85
K C 0.91
L C 0.93
G C 0.78
D E 0.71
Y E 0.94
L E 0.99
M E 0.98
F E 0.91
G C 0.53
P C 0.77
E C 0.62
T H 0.53
R C 0.55
G C 0.98
I C 0.93
P C 0.94
M H 0.95
S H 0.96
I H 0.95
L H 0.91
N H 0.91
E H 0.88
M C 0.87
P C 0.95
M C 0.94
E C 0.97
Q C 0.59
K E 0.92
I E 0.97
R E 0.96
I E 0.76
P C 0.59
M C 0.84
T C 0.94
A C 0.83
N C 0.73
S C 0.65
R H 0.48
S H 0.67
M H 0.87
N H 0.93
L H 0.98
S H 0.99
N H 1.00
S H 1.00
V H 1.00
A H 1.00
V H 1.00
T H 1.00
V H 1.00
Y H 1.00
E H 1.00
A H 0.99
W H 0.97
R H 0.94
Q H 0.87
L H 0.73
G H 0.54
Y C 0.65
K C 0.58
G C 0.65
A C 0.57
V C 0.58
N C 0.62
L C 0.81
P C 0.81
E C 0.84
V C 0.88
K C 0.96
END