PFRMAT SS
TARGET T0093
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0093-family.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 9.47182
METHOD
MODEL 1
M C 0.68
L E 0.64
D E 0.87
I E 0.98
V E 1.00
L E 0.99
Y E 0.96
E E 0.61
P C 0.82
E C 0.89
I C 0.89
P C 0.91
Q C 0.91
N C 0.85
T H 0.53
G H 0.77
N H 0.91
I H 0.95
I H 0.97
R H 0.96
L H 0.96
C H 0.96
A H 0.92
N H 0.87
T H 0.50
G C 0.93
F C 0.86
R E 0.73
L E 0.93
H E 0.94
L E 0.92
I E 0.77
E E 0.54
P C 0.60
L C 0.63
G C 0.63
F C 0.56
T C 0.64
W C 0.77
D C 0.83
D H 0.87
K H 0.91
R H 0.92
L H 0.89
R H 0.89
R H 0.89
S H 0.84
G C 0.59
L C 0.80
D C 0.82
Y H 0.52
H H 0.48
E H 0.47
F C 0.44
A E 0.55
E E 0.71
I E 0.88
K E 0.92
R E 0.88
H E 0.66
K C 0.68
T C 0.91
F H 0.94
E H 0.97
A H 0.97
F H 0.92
L H 0.90
E H 0.84
S H 0.74
E C 0.53
K C 0.73
P C 0.81
K C 0.84
R C 0.73
L E 0.69
F E 0.90
A E 0.95
L E 0.95
T E 0.90
T E 0.74
K C 0.62
G C 0.81
C C 0.74
P C 0.62
A C 0.53
H C 0.49
S C 0.51
Q C 0.53
V C 0.51
K C 0.52
F C 0.58
K C 0.71
L C 0.80
G C 0.82
D C 0.67
Y E 0.79
L E 0.94
M E 0.90
F E 0.77
G C 0.68
P C 0.73
E C 0.59
T C 0.56
R C 0.70
G C 0.88
I C 0.86
P C 0.81
M H 0.96
S H 0.95
I H 0.94
L H 0.88
N H 0.85
E H 0.76
M C 0.79
P C 0.88
M C 0.84
E C 0.83
Q C 0.72
K E 0.61
I E 0.76
R E 0.76
I E 0.54
P C 0.62
M C 0.77
T C 0.89
A C 0.85
N C 0.82
S C 0.67
R C 0.53
S H 0.45
M H 0.64
N H 0.77
L H 0.91
S H 0.96
N H 0.98
S H 0.99
V H 0.99
A H 0.98
V H 0.99
T H 0.99
V H 0.99
Y H 0.98
E H 0.95
A H 0.87
W H 0.76
R H 0.76
Q H 0.71
L C 0.50
G C 0.64
Y C 0.75
K C 0.63
G C 0.60
A H 0.48
V C 0.48
N C 0.53
L C 0.69
P C 0.76
E C 0.81
V C 0.89
K C 0.96
END