PFRMAT SS TARGET T0092 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0092.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 80.4533 METHOD MODEL 1 M C 0.63 V C 0.66 K C 0.68 D C 0.56 T H 0.53 L H 0.59 F H 0.61 S H 0.68 T H 0.72 P H 0.75 I H 0.83 A H 0.86 K H 0.86 L H 0.84 G H 0.80 D H 0.77 F H 0.70 I H 0.58 F C 0.50 D C 0.71 E C 0.69 N C 0.73 V H 0.76 A H 0.81 E H 0.86 V H 0.80 F H 0.75 P H 0.76 D H 0.77 M H 0.72 I H 0.66 Q H 0.61 R H 0.55 S C 0.56 V C 0.56 P C 0.51 G C 0.53 Y H 0.53 S H 0.61 N H 0.68 I H 0.79 I H 0.86 T H 0.89 A H 0.93 I H 0.95 G H 0.94 M H 0.94 L H 0.91 A H 0.87 E H 0.81 R H 0.53 F C 0.69 V C 0.72 T C 0.88 A C 0.90 D C 0.93 S C 0.59 N E 0.84 V E 0.93 Y E 0.91 D E 0.72 L C 0.56 G C 0.73 C C 0.81 S C 0.85 R C 0.56 G H 0.73 A H 0.91 A H 0.95 T H 0.97 L H 0.98 S H 0.98 A H 0.98 R H 0.97 R H 0.96 N H 0.92 I H 0.79 N C 0.92 Q C 0.92 P C 0.92 N C 0.90 V C 0.59 K E 0.81 I E 0.93 I E 0.98 G E 0.98 I E 0.89 D E 0.58 N C 0.88 S C 0.95 Q H 0.94 P H 0.98 M H 0.99 V H 0.99 E H 1.00 R H 1.00 C H 0.99 R H 0.99 Q H 0.98 H H 0.95 I H 0.91 A H 0.86 A H 0.78 Y C 0.51 H C 0.91 S C 0.85 E C 0.82 I C 0.81 P C 0.75 V E 0.70 E E 0.92 I E 0.97 L E 0.95 C E 0.87 N E 0.57 D C 0.75 I C 0.68 R C 0.65 H C 0.61 V C 0.79 E C 0.87 I C 0.86 K C 0.93 N C 0.87 A C 0.77 S C 0.54 M E 0.93 V E 0.95 I E 0.94 L E 0.88 N H 0.40 F H 0.50 T H 0.70 L H 0.68 Q H 0.53 F C 0.57 L C 0.85 P C 0.96 P H 0.80 E H 0.80 D H 0.83 R H 0.98 I H 0.99 A H 0.99 L H 0.99 L H 0.99 T H 0.99 K H 0.99 I H 0.99 Y H 0.98 E H 0.95 G H 0.89 L H 0.62 N C 0.95 P C 0.97 N C 0.99 G C 0.66 V E 0.85 L E 0.98 V E 0.99 L E 0.97 S E 0.83 E E 0.50 K C 0.70 F C 0.69 R C 0.77 F C 0.83 E C 0.78 D C 0.65 T C 0.60 K C 0.54 I H 0.65 N H 0.82 H H 0.90 L H 0.90 L H 0.91 I H 0.91 D H 0.93 L H 0.91 H H 0.88 H H 0.85 Q H 0.80 F H 0.76 K H 0.63 R H 0.48 A C 0.60 N C 0.75 G C 0.80 Y C 0.64 S C 0.53 E C 0.46 L C 0.45 E C 0.49 V H 0.58 S H 0.61 Q H 0.57 K H 0.47 R H 0.37 T C 0.48 A C 0.73 L C 0.84 E C 0.86 N C 0.76 V C 0.63 M C 0.62 R C 0.67 T C 0.81 D C 0.87 S C 0.93 I H 0.94 E H 0.96 T H 0.97 H H 0.99 K H 0.99 V H 0.99 R H 0.99 L H 0.99 K H 0.98 N H 0.96 V H 0.89 G C 0.97 F C 0.96 S E 0.52 Q E 0.84 V E 0.87 E E 0.86 L E 0.77 W E 0.61 F C 0.39 Q C 0.48 C C 0.55 F C 0.67 N C 0.74 F C 0.62 G C 0.44 S E 0.64 M E 0.79 I E 0.75 A E 0.70 V C 0.45 K C 0.92 END