;  SAM: prettyalign v2.2.1 (October 5, 1998) compiled 10/06/98_16:11:20.
;  SAM:  Sequence Alignment and Modeling Software System
;  (c) 1992-1998 Regents of the University of California, Santa Cruz
;  http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
;   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; -----------------------
                       10        20        30        40        50        60        70        80        90     
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t91        ....MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI--DIDPSLME-DDKEMLEDLIAAA---FNDAVRRAEELQK
Y134_MYCGE ....---MSFKKIAEMMRQAERETKKKTLAF-EQQAFEYNYKNGAIKITILGDLTLKSI--NIDPVLIDASDKVILEEMIIEA---TNEAVSDVKTKYD
AE002108_6 ....----MDFQKLAQELKKMQNTLSKKQKEFEE-KVFDFDYKGYVLVKIKGDLNIEAI--EIKTEIVDPEDKETLQDILRAA---INEAISITCKERD
SR5C_ARATH 323tKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQ-EDAEDLQKKIMSAKFDFNDFLKQTRAVAK
2FFHA      245tKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLE-AEAPKSAKELSLE-----DFLKQMQNLKR


             100       110           
               |         |           
t91        EKMASVTAGMPLPPGMKFPF-.....
Y134_MYCGE NLVE---KTMPKVPGLF----.....
AE002108_6 AIMN---ATIPKGTGLF----.....
SR5C_ARATH MGSM--TRVLGMIPGMGKVS-129n.
2FFHA      LGPF--SEILGLLPGVPQGL-k73m.