# TARGET T0091 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0091.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.3505 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.064 0.264 0.671 2 F 0.035 0.158 0.807 3 G 0.038 0.175 0.786 4 K 0.064 0.201 0.735 5 G 0.078 0.144 0.778 6 G 0.045 0.124 0.831 7 L 0.001 0.958 0.041 8 G 0.001 0.977 0.023 9 G 0.001 0.984 0.016 10 L 0.001 0.975 0.025 11 M 0.001 0.982 0.018 12 K 0.001 0.980 0.019 13 Q 0.001 0.985 0.015 14 A 0.001 0.983 0.017 15 Q 0.001 0.986 0.014 16 Q 0.001 0.991 0.009 17 M 0.001 0.987 0.012 18 Q 0.001 0.989 0.010 19 E 0.001 0.993 0.007 20 K 0.001 0.992 0.008 21 M 0.001 0.994 0.006 22 Q 0.001 0.994 0.006 23 K 0.001 0.993 0.006 24 M 0.001 0.992 0.007 25 Q 0.001 0.988 0.011 26 E 0.001 0.987 0.013 27 E 0.002 0.970 0.028 28 I 0.007 0.910 0.083 29 A 0.014 0.846 0.140 30 Q 0.058 0.594 0.348 31 L 0.255 0.305 0.440 32 E 0.532 0.110 0.358 33 V 0.702 0.045 0.253 34 T 0.734 0.023 0.243 35 G 0.749 0.011 0.239 36 E 0.640 0.009 0.351 37 S 0.303 0.022 0.674 38 G 0.101 0.013 0.886 39 A 0.140 0.008 0.852 40 G 0.492 0.003 0.505 41 L 0.874 0.001 0.125 42 V 0.968 0.001 0.032 43 K 0.994 0.001 0.006 44 I 0.997 0.001 0.002 45 T 0.995 0.001 0.005 46 I 0.969 0.001 0.031 47 N 0.662 0.001 0.337 48 G 0.219 0.007 0.774 49 A 0.210 0.016 0.774 50 H 0.512 0.017 0.471 51 N 0.660 0.012 0.328 52 C 0.793 0.008 0.199 53 R 0.781 0.010 0.209 54 R 0.752 0.021 0.227 55 I 0.696 0.031 0.273 56 D 0.730 0.017 0.253 57 I 0.497 0.019 0.484 58 D 0.090 0.003 0.907 59 P 0.031 0.753 0.217 60 S 0.019 0.873 0.108 61 L 0.019 0.896 0.085 62 M 0.062 0.756 0.182 63 E 0.073 0.645 0.282 64 D 0.025 0.504 0.471 65 D 0.004 0.351 0.644 66 K 0.001 0.973 0.027 67 E 0.001 0.983 0.017 68 M 0.001 0.982 0.017 69 L 0.001 0.991 0.009 70 E 0.001 0.994 0.006 71 D 0.001 0.994 0.006 72 L 0.001 0.993 0.007 73 I 0.001 0.989 0.011 74 A 0.001 0.987 0.013 75 A 0.001 0.983 0.017 76 A 0.001 0.971 0.029 77 F 0.001 0.965 0.035 78 N 0.001 0.967 0.033 79 D 0.001 0.972 0.028 80 A 0.001 0.978 0.022 81 V 0.001 0.981 0.019 82 R 0.001 0.984 0.016 83 R 0.001 0.988 0.012 84 A 0.001 0.989 0.010 85 E 0.001 0.991 0.009 86 E 0.001 0.993 0.007 87 L 0.001 0.990 0.009 88 Q 0.001 0.986 0.014 89 K 0.001 0.983 0.017 90 E 0.001 0.977 0.023 91 K 0.001 0.965 0.034 92 M 0.001 0.953 0.046 93 A 0.001 0.950 0.050 94 S 0.001 0.941 0.058 95 V 0.003 0.923 0.074 96 T 0.004 0.903 0.093 97 A 0.005 0.886 0.109 98 G 0.007 0.784 0.210 99 M 0.008 0.326 0.666 100 P 0.014 0.078 0.908 101 L 0.028 0.066 0.906 102 P 0.017 0.033 0.950 103 P 0.029 0.049 0.921 104 G 0.052 0.068 0.880 105 M 0.077 0.090 0.833 106 K 0.060 0.094 0.846 107 F 0.091 0.104 0.805 108 P 0.060 0.075 0.865 109 F 0.015 0.013 0.972