PFRMAT SS
TARGET T0090
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0090.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 77.6843
METHOD
MODEL 1
M C 0.68
L C 0.72
K C 0.72
P C 0.62
D H 0.55
N H 0.56
L H 0.57
P H 0.55
V H 0.48
T C 0.50
F C 0.61
G C 0.76
K C 0.72
N C 0.68
D C 0.58
V C 0.39
E E 0.46
I E 0.48
I E 0.40
A C 0.60
R C 0.59
E C 0.47
T E 0.50
L E 0.54
Y E 0.44
R C 0.69
G C 0.78
F C 0.55
F E 0.55
S E 0.58
L E 0.51
D C 0.41
L C 0.43
Y C 0.42
R C 0.49
F C 0.64
R C 0.68
H C 0.60
R C 0.54
L C 0.59
F C 0.70
N C 0.71
G C 0.67
Q C 0.58
M C 0.51
S C 0.51
H C 0.42
E E 0.42
V E 0.44
R E 0.46
R E 0.44
E E 0.46
I E 0.46
F C 0.58
E C 0.74
R C 0.80
G C 0.82
H C 0.72
A E 0.79
A E 0.95
V E 0.99
L E 0.99
L E 0.98
P E 0.96
F E 0.90
D E 0.79
P C 0.63
V C 0.95
R C 0.98
D C 0.92
E E 0.63
V E 0.97
V E 0.99
L E 1.00
I E 0.99
E E 0.94
Q E 0.79
I C 0.55
R C 0.78
I C 0.88
A C 0.87
A C 0.83
Y C 0.79
D C 0.82
T C 0.82
S C 0.87
E C 0.88
T C 0.90
P C 0.84
W C 0.54
L E 0.75
L E 0.82
E E 0.75
M E 0.57
V C 0.63
A C 0.66
G E 0.47
M E 0.65
I E 0.50
E C 0.87
E C 0.95
G C 0.95
E C 0.86
S C 0.82
V H 0.98
E H 0.99
D H 1.00
V H 1.00
A H 1.00
R H 1.00
R H 1.00
E H 1.00
A H 1.00
I H 1.00
E H 0.99
E H 0.98
A H 0.94
G C 0.95
L C 0.95
I C 0.66
V C 0.58
K C 0.48
R E 0.46
T E 0.62
K E 0.75
P E 0.73
V E 0.66
L E 0.62
S E 0.58
F E 0.62
L E 0.53
A C 0.60
S C 0.81
P C 0.85
G C 0.86
G C 0.81
T C 0.80
S C 0.75
E C 0.60
R E 0.67
S E 0.84
S E 0.95
I E 0.99
M E 0.99
V E 1.00
G E 0.99
E E 0.96
V E 0.82
D C 0.60
A C 0.88
T C 0.88
T C 0.70
A C 0.67
S C 0.67
G C 0.81
I C 0.77
H C 0.68
G C 0.68
L C 0.72
A C 0.79
D C 0.88
E C 0.60
N C 0.51
E C 0.50
D C 0.48
I E 0.50
R E 0.61
V E 0.68
H E 0.79
V E 0.73
V C 0.50
S C 0.83
R H 0.81
E H 0.86
Q H 0.89
A H 0.78
Y H 0.83
Q H 0.84
W H 0.83
V H 0.81
E H 0.75
E H 0.71
G H 0.52
K H 0.49
I C 0.48
D C 0.52
N C 0.59
A H 0.55
A H 0.74
S H 0.86
V H 0.92
I H 0.96
A H 0.97
L H 0.98
Q H 0.98
W H 0.98
L H 0.95
Q H 0.89
L H 0.82
H H 0.64
H H 0.75
Q H 0.85
A H 0.82
L H 0.79
K H 0.71
N H 0.64
E H 0.51
W C 0.71
A C 0.97
END