;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
; Sequence numbers correspond to the following labels:
; 1 T0090
; 2 1tum
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPF
   2 MKKL------------------------------------------------------QIAVGII


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 DPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF
   2 RNENNEIFITRRAADAH-----MANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKL


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 LASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQ
   2 EYEFPDRHITLWFWLVERWEGEPWGKEG--QPGEWMSLVGLNADDFPPA-------N-EPVIAKL


        200         
         |         
   1 WLQLHHQALKNEWA
   2 KRL-----------