;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
; Sequence numbers correspond to the following labels:
; 1 T0090
; 2 1tum
                      10                20                  30        4
                      |                 |                   |         
   1 MLKPDnlpvtfgkNDVEIIAREtly27hevRREIFERGHAAvll22iaaYDtsETPWLLEMVAGM
   2 MKKLQ........IAVGIIRNE........NNEIFITRRAA........DA..HMANKLEFPGGK


      0        50        60            70                    80        
     |         |         |             |                     |        
   1 IEEGESVEDVARREAIEEAGLIVKRtkpvLSFLASPggts-ers18sgiHGLADENEDIRVHVVS
   2 IEMGETPEQAVVRELQEEVGITPQH....FSLFEKL....E........YEFPDRHITLWFWLVE


      90       100       110       120         
      |         |         |         |         
   1 REQAYQWVEEGKIDNAASVIALQWLQLHHQ----ALKNEWA
   2 RWEGEPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKLKRL