; SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15 ; (c) 1992-1999 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ------ Citations (HMMs, SAM) ------ ; A. Krogh et al., Hidden Markov models in computational biology: ; ------------- Citations (SAM, SAM-T99, HMMs) ----------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1999. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; -------------------------------------------------------------- ; Sequence numbers correspond to the following labels: ; 1 gi|95825|pir||A42359_23:179 ; 2 gi|4335918|gb|AAD17516.1|_23:179 ; 3 gi|1232061|gb|AAA92621.1|_23:179 ; 4 gi|4335912|gb|AAD17513.1|_23:178 ; 5 gi|4335916|gb|AAD17515.1|_23:178 ; 6 T0088 ; 7 gi|1146336|gb|AAA85086.1|_23:178 ; 8 gi|2121123|pir||I55123_23:178 ; 9 gi|4335914|gb|AAD17514.1|_23:178 ; 10 gi|2121054|pir||I41205_23:178 10 20 30 40 50 60 | | | | | | 1 AVSFIGSTENDVGPSLGSYSRTHAMDNLPFVYDTRNKIGYQNANVWHISKGFCVGLDGKVDLPVV 2 AVSFIGSTENDVGPSPGSYSRTHAMDNLPFVYNTGNNIGYQNANVWRISKGFCVGLDGKVDLPVV 3 AVSFIGSTENDVGPSPGSYSRTHAMDNLPFVYNTGNNIGYQNANVWRISKGFCVGLDGKVDLPVV 4 AVSFIGSTENDVGPSQGSYSRTHAMDNLPFVYNTGYNIGYQNANVWRISNGFCVGLDGKVDLPVV 5 AVSFIGSTENDVGPSQGSYSSTHAMDNLPFVYNTGHNIGYQNANVWRISGGFCVGLDGKVDLPVV 6 AVSFIGSTENDVGPSQGSYSSTHAMDNLPFVYNTGYNIGYQNANVWRISGGFCVGLDGKVDLPVV 7 AVSFIGSTENDVGPSQGSYSSTHAMDNLPFVYNTGYNIGYQNANVWRISGGFCVGLDGKVDLPVV 8 AVSFIGSTENDVGPSQGSYSSTHAMDNLPFVYNTGYNIGYQNANVWRISGGFCVGLDGKVDLPVV 9 AVSFIGSTENDVGPSQSSYSRTHAMDNLPFVYNTGYNIGYQNANVWRISGGFCVGLDGKVDLPVV 10 VVSFIGSTENDVGPSQGSYSSTHAMDNLPFVYNTGYNIGYQNANVWRIGGGFCVGLDGKVDLPVV 70 80 90 100 110 120 13 | | | | | | 1 GSLDGQSIYGLTEEVGLLIWMGDTKYSRGTAMSGNSWENVFSGWCVGaNTASTQGLSVRVTPVIL 2 GSLDGQSIYGLTEEVGLLIWMGDTKYSRGTAMSGNSWENVFSGWCVGaNTASTQGLSVRVTPVIL 3 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVGaNTASTQGLSVRVTPVIL 4 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYASTQGLSVHVRPVIL 5 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYVSTQGLSVHVRPVIL 6 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYVSTQGLSVHVRPVIL 7 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYVSTQGLSVHVRPVIL 8 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYVSTQGLSVHVRPVIL 9 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG.NYVSTQGLSVHVRPVIL 10 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWSVG.NYLSTQGLSVHVRPVIL 0 140 150 | | | 1 KRNSSARYSVQKTSIGSIRMRPYNGSS 2 KRNSSARYSVQKTSIGSIRMRPYNGSS 3 KRNSSARYSVQKTSIGSIRMRPYNGSS 4 KRNSSAQYSVQKTSIGSIRMRPYNGSS 5 KRNSSAQYSVQKTSIGSIRMRPYNGSS 6 KRNSSAQYSVQKTSIGSIRMRPYNGSS 7 KRNSSAQYSVQKTSIGSIRMRPYNGSS 8 KRNSSAQYSVQKTSIGSIRMRPYNGSS 9 KRNSSAQYSVQKTSIGSIRMRPYNGSS 10 KRNSSAQYSVQKTSIGSIRMRPYNGSS