PFRMAT SS
TARGET T0088
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0088.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.00263
METHOD
MODEL 1
A C 0.506
V E 0.732
S E 0.831
F E 0.886
I E 0.784
G C 0.529
S C 0.742
T C 0.826
E C 0.741
N C 0.759
D C 0.687
V C 0.738
G C 0.793
P C 0.821
S C 0.855
Q C 0.801
G C 0.836
S C 0.746
Y C 0.541
S C 0.517
S C 0.459
T C 0.453
H C 0.392
A C 0.407
M C 0.538
D C 0.710
N C 0.858
L C 0.814
P C 0.691
F E 0.832
V E 0.904
Y E 0.830
N E 0.519
T C 0.909
G C 0.904
Y C 0.657
N C 0.587
I C 0.496
G C 0.548
Y C 0.556
Q C 0.518
N E 0.482
A E 0.497
N E 0.583
V E 0.900
W E 0.930
R E 0.902
I E 0.755
S C 0.574
G C 0.774
G C 0.633
F E 0.751
C E 0.803
V E 0.783
G E 0.642
L C 0.560
D C 0.674
G C 0.706
K E 0.494
V E 0.522
D C 0.609
L C 0.591
P C 0.559
V E 0.671
V E 0.781
G E 0.730
S E 0.512
L C 0.808
D C 0.929
G C 0.869
Q C 0.581
S E 0.493
I E 0.559
Y E 0.446
G C 0.521
L C 0.490
T H 0.478
E H 0.768
E H 0.834
V H 0.844
G H 0.667
L H 0.610
L H 0.649
I H 0.612
W E 0.469
M E 0.343
G C 0.641
D C 0.722
T C 0.771
N C 0.775
Y C 0.691
S C 0.624
R C 0.565
G C 0.597
T C 0.398
A C 0.435
M C 0.449
S C 0.590
G C 0.818
N C 0.688
S C 0.547
W H 0.389
E H 0.392
N H 0.373
V C 0.406
F C 0.468
S C 0.667
G C 0.644
W E 0.549
C E 0.548
V C 0.569
G C 0.649
N C 0.553
Y E 0.529
V E 0.655
S E 0.584
T C 0.524
Q C 0.559
G C 0.521
L E 0.678
S E 0.780
V E 0.864
H E 0.874
V E 0.881
R E 0.857
P E 0.900
V E 0.961
I E 0.976
L E 0.952
K E 0.822
R C 0.539
N C 0.823
S C 0.832
S C 0.744
A C 0.550
Q E 0.564
Y E 0.769
S E 0.796
V E 0.808
Q E 0.715
K E 0.563
T C 0.526
S C 0.626
I C 0.655
G C 0.604
S C 0.424
I E 0.442
R E 0.470
M C 0.516
R C 0.666
P C 0.698
Y C 0.807
N C 0.842
G C 0.888
S C 0.907
S C 0.977
END