# TARGET T0087-181-end # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0087-181-end.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.50887 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 Y 0.007 0.953 0.040 2 G 0.002 0.985 0.013 3 L 0.001 0.993 0.006 4 A 0.001 0.992 0.007 5 M 0.002 0.988 0.010 6 L 0.003 0.975 0.022 7 K 0.002 0.952 0.046 8 A 0.002 0.900 0.098 9 G 0.007 0.414 0.579 10 T 0.015 0.096 0.889 11 N 0.027 0.085 0.888 12 L 0.027 0.123 0.850 13 A 0.028 0.152 0.820 14 S 0.037 0.134 0.830 15 K 0.061 0.066 0.873 16 T 0.043 0.071 0.886 17 A 0.001 0.969 0.030 18 A 0.001 0.983 0.017 19 Q 0.001 0.986 0.014 20 L 0.003 0.971 0.026 21 V 0.005 0.953 0.042 22 D 0.004 0.945 0.050 23 I 0.004 0.915 0.081 24 D 0.011 0.805 0.185 25 A 0.015 0.676 0.309 26 K 0.028 0.636 0.337 27 T 0.075 0.552 0.373 28 F 0.164 0.278 0.559 29 E 0.231 0.136 0.632 30 L 0.104 0.130 0.765 31 N 0.034 0.046 0.920 32 G 0.067 0.053 0.880 33 S 0.280 0.036 0.684 34 Q 0.670 0.007 0.323 35 V 0.830 0.002 0.168 36 R 0.931 0.001 0.069 37 V 0.989 0.001 0.010 38 A 0.994 0.001 0.006 39 Q 0.995 0.001 0.005 40 V 0.979 0.001 0.021 41 N 0.883 0.001 0.117 42 T 0.743 0.003 0.254 43 V 0.496 0.005 0.498 44 D 0.189 0.009 0.802 45 I 0.006 0.888 0.106 46 N 0.002 0.930 0.069 47 E 0.001 0.959 0.040 48 V 0.002 0.947 0.051 49 L 0.002 0.960 0.039 50 E 0.001 0.963 0.036 51 R 0.001 0.976 0.024 52 Q 0.001 0.982 0.018 53 N 0.001 0.991 0.009 54 E 0.001 0.993 0.007 55 I 0.001 0.995 0.005 56 E 0.001 0.996 0.004 57 E 0.001 0.996 0.004 58 A 0.001 0.995 0.005 59 I 0.001 0.989 0.011 60 K 0.001 0.983 0.016 61 A 0.001 0.976 0.024 62 S 0.002 0.924 0.073 63 Q 0.003 0.877 0.120 64 A 0.004 0.783 0.212 65 A 0.006 0.711 0.283 66 N 0.015 0.406 0.579 67 G 0.023 0.156 0.821 68 Y 0.054 0.129 0.817 69 S 0.170 0.178 0.651 70 D 0.437 0.192 0.371 71 F 0.737 0.117 0.146 72 V 0.885 0.060 0.055 73 L 0.917 0.055 0.028 74 M 0.879 0.074 0.047 75 I 0.844 0.075 0.081 76 T 0.594 0.115 0.291 77 D 0.163 0.235 0.602 78 I 0.087 0.236 0.677 79 L 0.049 0.264 0.688 80 N 0.043 0.143 0.814 81 S 0.015 0.608 0.376 82 N 0.017 0.595 0.388 83 S 0.052 0.539 0.409 84 E 0.183 0.490 0.327 85 I 0.415 0.403 0.182 86 L 0.459 0.385 0.155 87 A 0.374 0.407 0.220 88 L 0.243 0.261 0.496 89 G 0.049 0.042 0.909 90 N 0.032 0.249 0.719 91 N 0.018 0.579 0.404 92 T 0.003 0.920 0.076 93 D 0.002 0.965 0.033 94 K 0.004 0.978 0.019 95 V 0.007 0.971 0.023 96 E 0.006 0.972 0.022 97 A 0.002 0.974 0.023 98 A 0.002 0.968 0.030 99 F 0.002 0.936 0.062 100 N 0.005 0.315 0.680 101 F 0.031 0.445 0.524 102 T 0.181 0.388 0.432 103 L 0.149 0.488 0.363 104 K 0.123 0.508 0.369 105 N 0.066 0.162 0.771 106 N 0.061 0.031 0.908 107 H 0.597 0.035 0.368 108 A 0.873 0.018 0.109 109 F 0.897 0.013 0.090 110 L 0.896 0.025 0.079 111 A 0.623 0.056 0.321 112 G 0.417 0.036 0.546 113 A 0.692 0.026 0.282 114 V 0.755 0.023 0.222 115 S 0.718 0.023 0.259 116 R 0.390 0.389 0.220 117 K 0.243 0.491 0.266 118 K 0.208 0.492 0.300 119 Q 0.190 0.378 0.431 120 V 0.141 0.319 0.540 121 V 0.111 0.386 0.503 122 P 0.062 0.531 0.407 123 Q 0.032 0.626 0.342 124 L 0.024 0.750 0.226 125 T 0.013 0.817 0.170 126 E 0.015 0.809 0.176 127 S 0.014 0.752 0.234 128 F 0.023 0.651 0.327 129 N 0.017 0.360 0.623 130 G 0.003 0.008 0.988