# TARGET T0087-1-180 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0087-1-180.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 28.9018 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.077 0.021 0.901 2 S 0.207 0.009 0.784 3 K 0.443 0.003 0.555 4 I 0.904 0.001 0.095 5 L 0.982 0.001 0.017 6 V 0.987 0.001 0.012 7 F 0.971 0.001 0.028 8 G 0.832 0.003 0.166 9 H 0.470 0.008 0.522 10 Q 0.211 0.020 0.769 11 N 0.099 0.016 0.885 12 P 0.069 0.014 0.918 13 D 0.022 0.011 0.967 14 S 0.003 0.727 0.270 15 D 0.002 0.835 0.164 16 A 0.002 0.920 0.077 17 I 0.003 0.964 0.033 18 G 0.002 0.978 0.020 19 S 0.001 0.989 0.010 20 S 0.001 0.991 0.008 21 M 0.001 0.995 0.005 22 A 0.001 0.997 0.003 23 Y 0.001 0.994 0.005 24 A 0.001 0.996 0.004 25 Y 0.001 0.989 0.010 26 L 0.001 0.978 0.021 27 K 0.001 0.962 0.037 28 R 0.002 0.906 0.092 29 Q 0.003 0.840 0.158 30 L 0.008 0.479 0.513 31 G 0.010 0.037 0.953 32 V 0.051 0.039 0.910 33 D 0.244 0.017 0.739 34 A 0.509 0.009 0.482 35 Q 0.827 0.006 0.167 36 A 0.940 0.006 0.054 37 V 0.903 0.007 0.089 38 A 0.778 0.008 0.214 39 L 0.411 0.015 0.573 40 G 0.208 0.022 0.770 41 N 0.093 0.043 0.864 42 P 0.041 0.142 0.818 43 N 0.022 0.210 0.767 44 E 0.015 0.576 0.409 45 E 0.018 0.637 0.345 46 T 0.018 0.748 0.234 47 A 0.017 0.815 0.168 48 F 0.018 0.826 0.156 49 V 0.019 0.842 0.139 50 L 0.020 0.845 0.135 51 D 0.023 0.811 0.166 52 Y 0.023 0.786 0.191 53 F 0.032 0.659 0.309 54 G 0.035 0.296 0.670 55 I 0.060 0.219 0.721 56 Q 0.100 0.175 0.725 57 A 0.063 0.142 0.796 58 P 0.074 0.178 0.748 59 P 0.121 0.230 0.649 60 V 0.174 0.256 0.569 61 V 0.176 0.259 0.566 62 K 0.153 0.298 0.549 63 S 0.100 0.341 0.559 64 A 0.095 0.335 0.569 65 Q 0.094 0.289 0.617 66 A 0.068 0.356 0.576 67 E 0.044 0.253 0.702 68 G 0.071 0.124 0.805 69 A 0.141 0.044 0.815 70 K 0.420 0.012 0.567 71 Q 0.902 0.003 0.095 72 V 0.972 0.002 0.026 73 I 0.994 0.001 0.005 74 L 0.992 0.001 0.007 75 T 0.897 0.002 0.100 76 D 0.448 0.003 0.548 77 H 0.039 0.031 0.930 78 N 0.011 0.076 0.914 79 E 0.020 0.165 0.815 80 F 0.020 0.297 0.683 81 Q 0.034 0.358 0.607 82 Q 0.048 0.427 0.526 83 S 0.045 0.477 0.478 84 I 0.042 0.503 0.455 85 A 0.034 0.509 0.457 86 D 0.034 0.479 0.487 87 I 0.030 0.509 0.461 88 R 0.044 0.427 0.528 89 E 0.046 0.350 0.604 90 V 0.107 0.117 0.776 91 E 0.362 0.051 0.587 92 V 0.696 0.021 0.283 93 V 0.886 0.016 0.098 94 E 0.969 0.006 0.026 95 V 0.969 0.005 0.026 96 V 0.870 0.005 0.125 97 D 0.405 0.008 0.587 98 H 0.056 0.025 0.919 99 H 0.027 0.041 0.933 100 R 0.059 0.099 0.842 101 V 0.036 0.093 0.871 102 A 0.039 0.081 0.879 103 N 0.052 0.107 0.841 104 F 0.054 0.221 0.725 105 E 0.104 0.264 0.632 106 T 0.174 0.184 0.642 107 A 0.154 0.134 0.713 108 N 0.101 0.119 0.780 109 P 0.122 0.132 0.747 110 L 0.248 0.219 0.533 111 Y 0.419 0.191 0.390 112 M 0.595 0.159 0.247 113 R 0.502 0.157 0.341 114 L 0.335 0.133 0.532 115 E 0.118 0.168 0.714 116 P 0.064 0.216 0.720 117 V 0.097 0.247 0.656 118 G 0.059 0.149 0.792 119 S 0.126 0.456 0.418 120 A 0.037 0.895 0.068 121 S 0.009 0.978 0.012 122 S 0.006 0.991 0.003 123 I 0.004 0.994 0.002 124 V 0.002 0.996 0.002 125 Y 0.001 0.998 0.001 126 R 0.001 0.997 0.002 127 L 0.001 0.994 0.005 128 Y 0.001 0.994 0.005 129 K 0.001 0.987 0.012 130 E 0.001 0.967 0.032 131 N 0.001 0.887 0.112 132 G 0.003 0.058 0.939 133 V 0.021 0.028 0.951 134 A 0.057 0.016 0.927 135 I 0.042 0.089 0.869 136 P 0.020 0.113 0.867 137 K 0.001 0.971 0.028 138 E 0.001 0.985 0.015 139 I 0.001 0.995 0.005 140 A 0.001 0.993 0.006 141 G 0.001 0.994 0.004 142 V 0.002 0.993 0.005 143 M 0.003 0.989 0.008 144 L 0.004 0.985 0.011 145 S 0.007 0.974 0.019 146 G 0.022 0.924 0.054 147 L 0.050 0.849 0.101 148 I 0.073 0.789 0.138 149 S 0.112 0.632 0.256 150 D 0.155 0.445 0.399 151 T 0.077 0.452 0.471 152 L 0.139 0.381 0.480 153 L 0.182 0.316 0.502 154 L 0.189 0.222 0.589 155 K 0.153 0.093 0.754 156 S 0.073 0.056 0.871 157 P 0.047 0.075 0.877 158 T 0.059 0.027 0.914 159 T 0.084 0.014 0.902 160 H 0.030 0.007 0.963 161 A 0.003 0.790 0.208 162 S 0.001 0.827 0.172 163 D 0.001 0.884 0.115 164 P 0.001 0.985 0.014 165 A 0.001 0.989 0.010 166 V 0.001 0.993 0.006 167 A 0.001 0.988 0.011 168 E 0.001 0.990 0.009 169 D 0.001 0.984 0.015 170 L 0.002 0.960 0.038 171 A 0.002 0.947 0.051 172 K 0.003 0.900 0.097 173 I 0.003 0.881 0.116 174 A 0.012 0.617 0.371 175 G 0.010 0.127 0.863 176 V 0.011 0.352 0.637 177 D 0.026 0.264 0.710 178 L 0.047 0.253 0.700 179 Q 0.040 0.122 0.838 180 E 0.014 0.020 0.966