PFRMAT SS
TARGET T0087-1-180
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0087-1-180.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28.9018
METHOD
MODEL 1
M C 0.901
S C 0.784
K C 0.555
I E 0.904
L E 0.982
V E 0.987
F E 0.971
G E 0.832
H C 0.522
Q C 0.769
N C 0.885
P C 0.918
D C 0.967
S H 0.727
D H 0.835
A H 0.920
I H 0.964
G H 0.978
S H 0.989
S H 0.991
M H 0.995
A H 0.997
Y H 0.994
A H 0.996
Y H 0.989
L H 0.978
K H 0.962
R H 0.906
Q H 0.840
L C 0.513
G C 0.953
V C 0.910
D C 0.739
A E 0.509
Q E 0.827
A E 0.940
V E 0.903
A E 0.778
L C 0.573
G C 0.770
N C 0.864
P C 0.818
N C 0.767
E H 0.576
E H 0.637
T H 0.748
A H 0.815
F H 0.826
V H 0.842
L H 0.845
D H 0.811
Y H 0.786
F H 0.659
G C 0.670
I C 0.721
Q C 0.725
A C 0.796
P C 0.748
P C 0.649
V C 0.569
V C 0.566
K C 0.549
S C 0.559
A C 0.569
Q C 0.617
A C 0.576
E C 0.702
G C 0.805
A C 0.815
K C 0.567
Q E 0.902
V E 0.972
I E 0.994
L E 0.992
T E 0.897
D C 0.548
H C 0.930
N C 0.914
E C 0.815
F C 0.683
Q C 0.607
Q C 0.526
S C 0.478
I H 0.503
A H 0.509
D C 0.487
I H 0.509
R C 0.528
E C 0.604
V C 0.776
E C 0.587
V E 0.696
V E 0.886
E E 0.969
V E 0.969
V E 0.870
D C 0.587
H C 0.919
H C 0.933
R C 0.842
V C 0.871
A C 0.879
N C 0.841
F C 0.725
E C 0.632
T C 0.642
A C 0.713
N C 0.780
P C 0.747
L C 0.533
Y E 0.419
M E 0.595
R E 0.502
L C 0.532
E C 0.714
P C 0.720
V C 0.656
G C 0.792
S H 0.456
A H 0.895
S H 0.978
S H 0.991
I H 0.994
V H 0.996
Y H 0.998
R H 0.997
L H 0.994
Y H 0.994
K H 0.987
E H 0.967
N H 0.887
G C 0.939
V C 0.951
A C 0.927
I C 0.869
P C 0.867
K H 0.971
E H 0.985
I H 0.995
A H 0.993
G H 0.994
V H 0.993
M H 0.989
L H 0.985
S H 0.974
G H 0.924
L H 0.849
I H 0.789
S H 0.632
D H 0.445
T C 0.471
L C 0.480
L C 0.502
L C 0.589
K C 0.754
S C 0.871
P C 0.877
T C 0.914
T C 0.902
H C 0.963
A H 0.790
S H 0.827
D H 0.884
P H 0.985
A H 0.989
V H 0.993
A H 0.988
E H 0.990
D H 0.984
L H 0.960
A H 0.947
K H 0.900
I H 0.881
A H 0.617
G C 0.863
V C 0.637
D C 0.710
L C 0.700
Q C 0.838
E C 0.966
END