;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
             10        20          30          40        50                    60        70               80   
             |         |           |           |         |                     |         |                |   
m...SKILVFGHQNPDSDAIGSSM..AYAYLKRQLGVDAQAVAlgNPNEETAFVLDYF....G....IQAPPV....VKSAQAEGAKQVIl..TDHNEFQ....QSIAD-
337sSNVIIMGHKFPDMDSIGAAI..GILKVAQANNKDGFIVI..DPNQIGSSVQRLI....Ge11rFITPEE....AMEISNDDTLLVI...VDTHKPS....LVMEER
m38h---LVMGNESCDLDSAVSAVtlAFVYAQRHREHDYVPIL..NIPRRDYPLKTEV....Gh12vLLFRDD....IPREVVQDVNVIL...VDHHVSP....LA--PN
m37hGSFLLLGHEHPDEDCIASLV..AFALLLTRCNKRVEICCq.GPIRVQISFLIDIclynG....IAVHLD....TQTVPRMPDALVI...LDTPNPG....MIYAPP
m19nNKILIVTH--IDTDGLTSRA..ILQKLAERLNLDADFMF..-LKQITIETINDI....P....FKDYDL....IIFADLGSGQLKM...IKEKLDE....LNLSD-
m77kKRIIIYG--DYDVDGITGTA..ILYRVLKLLGAKVYPVL..PNRQTGYGLNKEL....Ms9dfLITVDNgtsaVEEIDQSSLETVV...IDHHNVPp7kaLIVNPK
y...------------YEKVVSDV..YQEYQQRLLRNHSLDFD..DLIMTTIQLFDRV....-....---PDV....LHYYQYKFQYIHIdeyQDTNRAQ....YTLVKK


          90            100                  110        120         130        140       150           160     
          |              |                    |          |           |          |         |             |     
-IREV....EVV.EVVDHHRva..NFET....A....NPL...YMRLEPV.GSASSIVYRL..YKENGVAIPKEIAGVM.LSGLISDTLLLk...SPTTHASDPAVAEDL
LVNKI....EHI.VVIDHHR....RGEE....Fir..DPL...LVYMEPYaSSTAELVTELleYQPKRLKINMIEATAL.LAGIIVDTKSF....SLRTGSRTFDAASYL
VTEIL....DHR.PLEDSSP....SFKQ....L....PTLcq.LDIDASV.GSCATLVAQR..YLAEDQPRSTSVAQLL.HATIVLDTINFa7ryGPKDEAMVQKLESEL
SCRLLlsdsTIR.KIELDHH....LFAN....AaccgDPG...YSLIARA.SSTCEIIA--..YLCYKLARNHAQRTALgIRNLYSRNVVL....SILTGMIGDAKTGAY
---KR....DKI.IILDHHQ....PEEIk8ihI....NPL...TIAKSGA.EICGAGVSYL..FAKAINNDWIDLAKYA.VLGAVGDIQNI....EGKLIGLNRKILCDA
VGAKR....EGL.KALSSSAl...SFYL....G....SALireFNLDEDP.RNFLDLVALG..LLADYMPVNPVTRTLA.VKGMYLLEKIAq7kpGVKALLEISSVNGNV
LAERF....QNIcAVGDADQs5rwRGAD....I....QNI...LSFERDY.PNAKVILLEQ..NYRSTKRILQAANEVI.EHNVNRKPKRI....WTENPEGKPILYYE-


    170          180         190           200        210           220        230       240               250 
     |            |           |             |          |             |          |         |                 | 
aKIAGVD...LQEYGLAMLKAGTN..LASKTAAQLVDIDa9gsQVRVAQVNtVDINEVLERQ....NEIEEAIKASQ.AANGYSDFVLMITD....ILNSNSEIlalgNN
.RAKGADtvlVQKFLKETVDSYIK..RAKLIQHTVLYKD....NIAIASLP.ENEEEYFDQV....LIAQAADSLLSmSEVEASFAVARRDE....QTVCISAR....SL
.NRKDAQ...RSSLFDELVAARAD..ISKLTLTEVLRKDmkvlQTDRQVVP.LAGMPILVRD....FVEKSGAEKAV.REFGVESNLLVILG....MYVSPADG....QV
.LISRKD...RALYTYFTQRLNTM..LREKTKPITGNIA....STK-QILH.TLESLSAEEH....AVYQTMVKNVQ.HRGSISLLLLNQTQ....TQALHECC....NA
.IMNGDV...KVKTDLQMYGRQTRplFVSMRYWADVRTD....LLNNDSKI.IKYIQSINKK....YDIEINPTMRL.AEIPFEHKRIIGNE....LLIKCLNY....VP
.TSRDVY...FSLAPRINAAGRIS..KPKFALDLLLEED....ERRARELA.LKLEEINRRRk5tnLTYKEAKKKAI.EEIDKNFLVVWDEEwhpgILGIVAGR....LA
.AMNEAD...EAQFVAGRIREAVE..RGERRYRDFAVLY....RTNAQSRV.MEEMLLKANI....PYQIVGGLKFY.DRKEIKDILAYLRV....IANPDDDL....SL


        260       270       280            
         |         |         |            
TDK.VEAAFNFTLKNNHAFLAGAVSRKKQVVPQLTE-sfng.
GEVnVQIIMEALEGGGHLTNAATQLSGISVSEALER-l15r.
QRD.LALI--SLSGQGQFVQRVQQALMESNDPKLEL-r61s.
EHF.VSLIKMATSNIAESISGIGISAYPDPTQQFYV-t68a.
NHW.TPYIPKVIFGEVYEFRGEEFGSPLRDLEEFST-161r.
GEF.NKPVAVFSKGKTKAVGSIRSIESIDVYDKVST-137v.
LRI.INVP-----KRGIGASTIDKLVRYAADHELS--.....