;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
             10        20          30            40        50                60        70           80         
             |         |           |             |         |                 |         |            |         
m...SKILVFGHQNPDSDAIGSSM..AYAYLKRQLGVDAQAVAlg..NPNEETAFVLDYF....G....IQAPPVVKSAQAEGAKQVIl..TDHNEFQQSI....AD--I
337sSNVIIMGHKFPDMDSIGAAI..GILKVAQANNKDGFIVI....DPNQIGSSVQRLI....Ge11rFITPEEAMEISNDDTLLVI...VDTHKPSLVM....EERLV
m38h---LVMGNESCDLDSAVSAVtlAFVYAQRHREHDYVPIL....NIPRRDYPLKTEV....Gh12vLLFRDDIPREVVQDVNVIL...VDHHVSPLA-....-PNVT
m37hGSFLLLGHEHPDEDCIASLV..AFALLLTRCNKRVEICCq...GPIRVQISFLIDIclynG....IAVHLDTQTVPRMPDALVI...LDTPNPGMIYa5scRLLLS
m19nNKILIVTHI--DTDGLTSRA..ILQKLAERLNLDADFMFl7ieTINDIPFKDYDLI....If11mIKEKLDELNLSDKRDKIII...LDHHQPE---....EIKIP
m77kKRIIIYG--DYDVDGITGTA..ILYRVLKLLGAKVYPVL....-PNRQT-------....G....YGLNKELMSIFEKYGDFLI...TVDNGTSAV-....-EEID
....-----------YYEKVVSDV..YQEYQQRLLRNHSLDFD....DLIMTTIQLFDRV....-....---PDVLHYYQYKFQYIHIdeyQDTNRAQYTL....VKKLA


    90             100            110        120         130           140       150           160        170  
    |               |              |          |           |             |         |             |          |  
REVEVVEVV....DHHRvaNFETA...NPL..YMRLEPV.GSASSIVYRL..YKENGVAIPKEIAGV....MLSGLISDTLLLk...SPTTHASDPAVAEDLaKIAGVD.
NKIEHIVVI....DHHR..RGEEFir.DPL..LVYMEPYaSSTAELVTELleYQPKRLKINMIEATA....LLAGIIVDTKSF....SLRTGSRTFDAASYL.RAKGADt
EILDHRPLE....DSSP..SFKQL...PTLcqLDIDASV.GSCATLVAQR..YLAEDQPRSTSVAQL....LHATIVLDTINFa7ryGPKDEAMVQKLESEL.NRKDAQ.
DSTIRKIEL....DHHL..FANAAccgDPG..YSLIARA.SSTCEIIAYLc.YKLARNHAQRTALGIr11sILTGMIGDAKTG....AYLISRKDRALYTYF.TQRLNT.
KTIIHINPL....TIAK..SGAEI...CGA..GVSYLFA.KAINNDWIDL..AKYAVLGAVGDIQNI....EGKLIGLNRKIL....CDAIMNGDVKVKTDL.QMYGRQt
QSSLETVVI....DHHN..VPPRI...PKK..ALIVNPK.VGAK------..-REGLKALSSSALSF....YLGSALIREFNL....DEDPRNFLDLVALGL.LADYMP.
ERFQNICAVg6qsIYRW..RGADI...QNI..LSFERDY.PNAKVILLEQ..NYRSTKRILQAANEV....IEHNVNRKPKRI....WTENPEGKP-ILYYE.AMNEAD.


          180       190                 200          210       220        230       240           250          
           |         |                   |            |         |          |         |             |          
...LQEYGLAMLKAGTNLASKTAAQ..L....VDIDa9gsQVRVAQVNt..VDINEVLERQNEIEEAIKASQ.AANGYSDFVLMITDILNSNSEIlalgNNTDK...VEA
vl.VQKFLKETVDSYIKRAKLIQHT..V....LYKD....NIAIASLP...ENEEEYFDQVLIAQAADSLLSmSEVEASFAVARRDEQTVCISAR....SLGEVn..VQI
...RSSLFDELVAARADISKLTLTE..V....LRKDmkvlQTDRQVVP...LAGMPILVRDFVEKSGAEKAV.REFGVESNLLVILGMYVSPADG....QVQRD...LAL
...MLREKTKPITGNIASTKQILHT..Le9haVYQT....MVKNVQHR...GSISLLLLNQTQTQALHECCN.AEHFVSLIKMATSNIAESISGI....GISAY...PDP
6fvSMRYWADVRTDLLNNDSKIIKY..I....QSINkky.DIEINPTM...RLAEIPFEHKRIIGNELLIKC.LNYVPNHWTPYIPKVIFGEVYE....FRGEE...FGS
...VNPVTRTLAVKGMYLLEKIAQG..K....VRKPgvkaLLEISSVNgnvTSRDVYFSLAPRINAAGRISK.PKF-ALDLLLEEDERRARELAL....KLEEInrrRKA
...EAQFVAGRIREAVERGERRYRDfaV....LYRT....N---AQSR...VMEEMLLKANIPYQIVGGLKF.YDRK------EIKDILAYLRVI....ANPDD...DLS


 260       270       280           
  |         |         |           
AFNFTLKNNHAFLAGAVSRKKQVVPQLT-e5ng.
IMEALEGGGHLTNAATQLSGISVSEALE-r16r.
I--SLSGQGQFVQRVQQALMESNDPKLE-l62s.
TQQFYVTQWRVRTAARV---KQLDLRLL-l49a.
PLRDLEEFSTCINACSRYGDYETALNVL-143r.
ITNLTYKEAKKKAIEEIDKNFLVVWDEE-186v.
LLRIINVPKRGIGASTIDKLVRYAADHE-ls...