# TARGET Q58598/358-537 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment pf01368-tuned.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 106.018 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 A 0.205 0.533 0.262 2 V 0.179 0.559 0.262 3 L 0.143 0.554 0.303 4 D 0.050 0.417 0.533 5 G 0.038 0.039 0.924 6 R 0.159 0.013 0.828 7 P 0.292 0.001 0.707 8 I 0.925 0.001 0.075 9 I 0.988 0.001 0.011 10 I 0.989 0.001 0.010 11 R 0.965 0.001 0.034 12 H 0.733 0.002 0.265 13 H 0.216 0.008 0.776 14 A 0.046 0.037 0.917 15 - 0.037 0.040 0.923 16 - 0.067 0.051 0.882 17 D 0.028 0.032 0.941 18 T 0.008 0.314 0.678 19 D 0.007 0.434 0.559 20 G 0.011 0.718 0.272 21 Y 0.007 0.916 0.077 22 C 0.005 0.963 0.032 23 G 0.002 0.986 0.012 24 G 0.001 0.992 0.007 25 I 0.001 0.996 0.004 26 A 0.001 0.997 0.003 27 L 0.001 0.996 0.004 28 E 0.001 0.996 0.004 29 K 0.001 0.990 0.009 30 A 0.001 0.978 0.022 31 I 0.001 0.958 0.041 32 L 0.002 0.914 0.085 33 P 0.002 0.852 0.146 34 I 0.005 0.573 0.422 35 D 0.007 0.044 0.949 36 V 0.058 0.036 0.906 37 D 0.358 0.023 0.619 38 A 0.630 0.012 0.359 39 I 0.823 0.010 0.167 40 W 0.929 0.010 0.062 41 H 0.884 0.012 0.104 42 F 0.757 0.011 0.232 43 F 0.408 0.026 0.566 44 K 0.134 0.054 0.812 45 R 0.109 0.143 0.748 46 - 0.097 0.243 0.659 47 - 0.073 0.245 0.682 48 R 0.056 0.329 0.615 49 P 0.037 0.434 0.529 50 S 0.033 0.572 0.395 51 K 0.029 0.652 0.319 52 A 0.030 0.752 0.217 53 P 0.033 0.780 0.187 54 F 0.014 0.899 0.087 55 Y 0.013 0.911 0.076 56 E 0.012 0.898 0.089 57 L 0.016 0.858 0.126 58 E 0.016 0.775 0.209 59 D 0.019 0.654 0.328 60 V 0.042 0.601 0.357 61 T 0.062 0.509 0.429 62 K 0.057 0.453 0.490 63 D 0.057 0.381 0.562 64 L 0.093 0.305 0.602 65 V 0.117 0.264 0.619 66 F 0.095 0.246 0.660 67 S 0.055 0.444 0.501 68 I 0.056 0.554 0.390 69 E 0.065 0.616 0.320 70 D 0.066 0.644 0.290 71 A 0.089 0.605 0.305 72 L 0.064 0.612 0.325 73 K 0.059 0.570 0.370 74 F 0.042 0.506 0.452 75 G 0.043 0.337 0.621 76 Q 0.031 0.212 0.757 77 K 0.042 0.046 0.912 78 L 0.097 0.021 0.882 79 P 0.204 0.002 0.794 80 L 0.850 0.001 0.148 81 I 0.979 0.001 0.021 82 V 0.994 0.001 0.006 83 L 0.991 0.001 0.008 84 I 0.915 0.001 0.084 85 D 0.437 0.005 0.558 86 N 0.058 0.019 0.922 87 G 0.012 0.047 0.941 88 S 0.017 0.113 0.870 89 T 0.016 0.175 0.809 90 D 0.020 0.312 0.668 91 E 0.019 0.363 0.618 92 D 0.013 0.550 0.437 93 I 0.010 0.734 0.256 94 P 0.011 0.818 0.172 95 A 0.011 0.883 0.106 96 I 0.013 0.901 0.087 97 S 0.018 0.892 0.090 98 K 0.013 0.891 0.096 99 A 0.010 0.886 0.104 100 K 0.009 0.839 0.152 101 A 0.013 0.736 0.251 102 Y 0.011 0.386 0.602 103 G 0.018 0.024 0.959 104 I 0.172 0.012 0.816 105 E 0.576 0.004 0.420 106 V 0.938 0.003 0.059 107 I 0.989 0.001 0.010 108 V 0.990 0.001 0.009 109 I 0.929 0.002 0.069 110 D 0.465 0.004 0.531 111 H 0.040 0.012 0.948 112 H 0.017 0.019 0.963 113 F 0.044 0.051 0.905 114 P 0.019 0.040 0.941 115 G 0.028 0.084 0.888 116 E 0.027 0.098 0.875 117 V 0.010 0.555 0.435 118 V 0.022 0.645 0.333 119 D 0.059 0.623 0.317 120 E 0.112 0.436 0.451 121 V 0.135 0.253 0.612 122 D 0.077 0.123 0.800 123 D 0.039 0.110 0.850 124 Y 0.073 0.106 0.821 125 V 0.300 0.083 0.618 126 D 0.688 0.047 0.266 127 A 0.857 0.027 0.116 128 H 0.881 0.027 0.092 129 V 0.761 0.017 0.222 130 N 0.336 0.009 0.655 131 P 0.115 0.055 0.830 132 Y 0.061 0.081 0.858 133 L 0.105 0.171 0.724 134 V 0.059 0.163 0.778 135 G 0.037 0.046 0.918 136 G 0.049 0.031 0.921 137 D 0.024 0.044 0.933 138 S 0.019 0.097 0.884 139 N 0.032 0.214 0.754 140 L 0.036 0.505 0.459 141 T 0.038 0.732 0.230 142 A 0.049 0.861 0.090 143 G 0.028 0.934 0.037 144 V 0.020 0.958 0.022 145 L 0.010 0.978 0.012 146 G 0.005 0.985 0.010 147 T 0.004 0.986 0.011 148 E 0.002 0.984 0.014 149 I 0.001 0.988 0.011 150 A 0.001 0.986 0.014 151 - 0.001 0.983 0.016 152 - 0.001 0.991 0.009 153 - 0.001 0.993 0.007 154 - 0.001 0.995 0.004 155 - 0.001 0.995 0.004 156 - 0.001 0.992 0.006 157 - 0.001 0.991 0.008 158 - 0.003 0.978 0.019 159 R 0.003 0.961 0.036 160 M 0.003 0.936 0.061 161 I 0.004 0.831 0.165 162 N 0.006 0.465 0.529 163 P 0.014 0.321 0.665 164 D 0.034 0.146 0.820 165 V 0.039 0.114 0.847 166 E 0.020 0.089 0.891 167 D 0.003 0.857 0.140 168 E 0.002 0.902 0.096 169 I 0.001 0.978 0.021 170 K 0.002 0.979 0.020 171 H 0.002 0.985 0.013 172 I 0.002 0.989 0.009 173 P 0.004 0.987 0.009 174 G 0.005 0.987 0.008 175 I 0.009 0.981 0.009 176 A 0.022 0.959 0.019 177 V 0.040 0.925 0.035 178 V 0.043 0.908 0.050 179 G 0.057 0.789 0.154 180 D 0.082 0.437 0.481 181 - 0.067 0.186 0.748 182 - 0.054 0.078 0.868 183 - 0.032 0.020 0.948