PFRMAT SS
TARGET Q58598/358-537
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment pf01368-tuned.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 106.018
METHOD
MODEL 1
A H 0.533
V H 0.559
L H 0.554
D C 0.533
G C 0.924
R C 0.828
P C 0.707
I E 0.925
I E 0.988
I E 0.989
R E 0.965
H E 0.733
H C 0.776
A C 0.917
- C 0.923
- C 0.882
D C 0.941
T C 0.678
D C 0.559
G H 0.718
Y H 0.916
C H 0.963
G H 0.986
G H 0.992
I H 0.996
A H 0.997
L H 0.996
E H 0.996
K H 0.990
A H 0.978
I H 0.958
L H 0.914
P H 0.852
I H 0.573
D C 0.949
V C 0.906
D C 0.619
A E 0.630
I E 0.823
W E 0.929
H E 0.884
F E 0.757
F C 0.566
K C 0.812
R C 0.748
- C 0.659
- C 0.682
R C 0.615
P C 0.529
S H 0.572
K H 0.652
A H 0.752
P H 0.780
F H 0.899
Y H 0.911
E H 0.898
L H 0.858
E H 0.775
D H 0.654
V H 0.601
T H 0.509
K C 0.490
D C 0.562
L C 0.602
V C 0.619
F C 0.660
S C 0.501
I H 0.554
E H 0.616
D H 0.644
A H 0.605
L H 0.612
K H 0.570
F H 0.506
G C 0.621
Q C 0.757
K C 0.912
L C 0.882
P C 0.794
L E 0.850
I E 0.979
V E 0.994
L E 0.991
I E 0.915
D C 0.558
N C 0.922
G C 0.941
S C 0.870
T C 0.809
D C 0.668
E C 0.618
D H 0.550
I H 0.734
P H 0.818
A H 0.883
I H 0.901
S H 0.892
K H 0.891
A H 0.886
K H 0.839
A H 0.736
Y C 0.602
G C 0.959
I C 0.816
E E 0.576
V E 0.938
I E 0.989
V E 0.990
I E 0.929
D C 0.531
H C 0.948
H C 0.963
F C 0.905
P C 0.941
G C 0.888
E C 0.875
V H 0.555
V H 0.645
D H 0.623
E C 0.451
V C 0.612
D C 0.800
D C 0.850
Y C 0.821
V C 0.618
D E 0.688
A E 0.857
H E 0.881
V E 0.761
N C 0.655
P C 0.830
Y C 0.858
L C 0.724
V C 0.778
G C 0.918
G C 0.921
D C 0.933
S C 0.884
N C 0.754
L H 0.505
T H 0.732
A H 0.861
G H 0.934
V H 0.958
L H 0.978
G H 0.985
T H 0.986
E H 0.984
I H 0.988
A H 0.986
- H 0.983
- H 0.991
- H 0.993
- H 0.995
- H 0.995
- H 0.992
- H 0.991
- H 0.978
R H 0.961
M H 0.936
I H 0.831
N C 0.529
P C 0.665
D C 0.820
V C 0.847
E C 0.891
D H 0.857
E H 0.902
I H 0.978
K H 0.979
H H 0.985
I H 0.989
P H 0.987
G H 0.987
I H 0.981
A H 0.959
V H 0.925
V H 0.908
G H 0.789
D C 0.481
- C 0.748
- C 0.868
- C 0.948
END