/projects/compbio/experiments/models.97/scripts2k/target2k -out pf01368-tuned \ -seed pf01368.a2m -tuneup @@@@ chgrp protein /projects/compbio/tmp/target2k-beta-1835 @@@@ cp /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368.a2m m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:52 /projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.001 prefilter: 10, actual: 0.01 /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.5, 0.5, 0.5 /projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 10 reverse_diff= 4 /projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=0 constraints=0 /projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 /projects/compbio/experiments/models.97/scripts2k/target2k: nsurgery=10 cutinsert=0.3 cutmatch=0.2 fracinsert=0.3 # About to count sequences in m0.a2m # About to count sequences in m0.a2m @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m0.a2m (47 sequences, 368 columns) as A2M alignment. @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -simple_threshold -15.5129154649202 -Emax 0.0001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0001\ -select_score 8 \ -select_seq 8 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0543478260869565 -db /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368.a2m -db m0.a2m Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -109.374596 Database has 94 sequences with 15540 residues. @@@@ cp tmp_1-a.mult tmp_1-a-sort.a2m # About to count sequences in tmp_1-a.train.seq # num_seqs=96 nll_thresh=-11.5129154649202 frac_id=0.814714781037267 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 0.814714781037267 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_1-a.train.seq (96 sequences, 368 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 0 (of 96) duplicate sequences with identical IDs 48 sequences left after dropping 48 of 96 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_1-a.train.seq (48 sequences, 368 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 10 \ -fracinsert 0.3 \ -cutinsert 0.3 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -131.04 88.11 -99.02 32.58 18 1 184 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -db m0.a2m \ -select_score 8 \ -select_seq 8 \ -simple_threshold -15.5129154649202 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0543478260869565 \ -align_short 5 -mdEmax 0.0001 Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -109.766083 Database has 47 sequences with 7770 residues. @@@@ cp -f tmp_1-b.mult m_1.a2m # About to count sequences in m0.a2m @@@@ modelfromalign tmp_2-a -alignfile m_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m_1.a2m (47 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -simple_threshold -13.2102403669758 -Emax 0.001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.001\ -select_score 8 \ -select_seq 8 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0543478260869565 -db /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368.a2m -db m0.a2m Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file m_1.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -85.836548 Database has 94 sequences with 15540 residues. @@@@ cp tmp_2-a.mult tmp_2-a-sort.a2m # About to count sequences in tmp_2-a.train.seq # num_seqs=94 nll_thresh=-9.21024036697585 frac_id=0.781656856945468 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 0.781656856945468 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_2-a.train.seq (94 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 0 (of 94) duplicate sequences with identical IDs Dropping 1 (of 94) sequences with > 78.2% id 46 sequences left after dropping 48 of 94 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_2-a.train.seq (46 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 10 \ -fracinsert 0.3 \ -cutinsert 0.3 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file m_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -92.97 -48.29 -75.64 11.41 6 0 184 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -db m0.a2m \ -select_score 8 \ -select_seq 8 \ -simple_threshold -13.2102403669758 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0543478260869565 \ -align_short 5 -mdEmax 0.001 Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -79.978210 Database has 47 sequences with 7770 residues. @@@@ cp -f tmp_2-b.mult m_2.a2m # About to count sequences in m0.a2m @@@@ modelfromalign tmp_3-a -alignfile m_2.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m_2.a2m (47 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -simple_threshold -10.9067547786486 -Emax 0.01 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.01\ -select_score 8 \ -select_seq 8 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0543478260869565 -db /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368.a2m -db m0.a2m Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file m_2.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -87.611275 Database has 94 sequences with 15540 residues. @@@@ cp tmp_3-a.mult tmp_3-a-sort.a2m # About to count sequences in tmp_3-a.train.seq # num_seqs=94 nll_thresh=-6.90675477864855 frac_id=0.740679362110393 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 0.740679362110393 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_3-a.train.seq (94 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 0 (of 94) duplicate sequences with identical IDs Dropping 2 (of 94) sequences with > 74.1% id 45 sequences left after dropping 49 of 94 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_3-a.train.seq (45 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 10 \ -fracinsert 0.3 \ -cutinsert 0.3 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_3-a.w Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file m_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -102.94 -46.46 -83.42 13.58 6 0 184 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -db m0.a2m \ -select_score 8 \ -select_seq 8 \ -simple_threshold -10.9067547786486 -Emax 0.01 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0543478260869565 \ -align_short 5 -mdEmax 0.01 Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -86.900208 Database has 47 sequences with 7770 residues. @@@@ cp -f tmp_3-b.mult m_3.a2m @@@@ modelfromalign tmp_4-a -alignfile m_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m_3.a2m (47 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 10 \ -simple_threshold -10.9067547786486 -Emax 0.01 \ -adpstyle 5 \ -align_short 0 -mdEmax 0.01\ -select_score 8 \ -select_seq 8 \ -select_align 8 -db /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368.a2m -db m0.a2m Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file m_3.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -89.901566 Database has 94 sequences with 15540 residues. @@@@ cp tmp_4-a.a2m tmp_4-a-sort.a2m @@@@ cp tmp_4-a.train.seq /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.a2m @@@@ rm -rf /projects/compbio/tmp/target2k-beta-1835 < /dev/null gzip -f pf01368-tuned.a2m prettyalign pf01368-tuned.a2m.gz -m8 -i -n -L3333 > pf01368-tuned.pa SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51 gzip -f pf01368.a2m prettyalign pf01368.a2m.gz -m8 -i -n -L3333 > pf01368.pa SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51 make -k pf01368-tuned-blast.rdb pf01368-tuned-double-blast.rdb make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' make[1]: *** No rule to make target `pf01368-tuned-blast.rdb'. make[1]: *** No rule to make target `pf01368-tuned-double-blast.rdb'. make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' make: [pf01368-tuned.blast-all] Error 2 (ignored) make -k pf01368-tuned.t2k.a2m.gz \ pf01368-tuned.t2k.pa \ pf01368-tuned.t2k.pa.html \ pf01368-tuned.t2k.2d \ pf01368-tuned.t2k.tree \ pf01368-tuned.t2k_sorted.pa \ pf01368-tuned.t2k.tree.ps \ pf01368-tuned.t2k.tree-unroot.ps make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' make[1]: *** No rule to make target `pf01368-tuned.t2k.a2m.gz'. make[1]: Target `pf01368-tuned.t2k.pa' not remade because of errors. make[1]: Target `pf01368-tuned.t2k.pa.html' not remade because of errors. make[1]: Target `pf01368-tuned.t2k.2d' not remade because of errors. make[1]: Target `pf01368-tuned.t2k.tree' not remade because of errors. make[1]: Target `pf01368-tuned.t2k_sorted.pa' not remade because of errors. make[1]: Target `pf01368-tuned.t2k.tree.ps' not remade because of errors. make[1]: Target `pf01368-tuned.t2k.tree-unroot.ps' not remade because of errors. make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' make: [pf01368-tuned.align] Error 2 (ignored) make: *** No rule to make target `pf01368-tuned.t2k-logo.eps', needed by `logo'. Stop. make -k pf01368-tuned-blast.rdb pf01368-tuned-double-blast.rdb make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' /projects/compbio/experiments/casp4/scripts/single-blast -q pf01368-tuned.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > pf01368-tuned-blast.rdb starting Q58598/358-537 with E=10 starting O26857/343-522 with E=10 starting O58078/350-531 with E=10 starting O28932/329-499 with E=10 starting O30161/24-173 with E=10 starting Y831_METJA/19-168 with E=10 starting O27473/31-174 with E=10 starting O57804/23-171 with E=10 starting O29559/20-162 with E=10 starting O29523/14-162 with E=10 starting Y977_METJA/15-169 with E=10 starting O26266/1-146 with E=10 starting O29950/1-131 with E=10 starting O25115/42-203 with E=10 starting Q9ZD22/80-250 with E=10 starting O32044/76-232 with E=10 starting RECJ_ECOLI/67-239 with E=10 starting RECJ_ERWCH/66-238 with E=10 starting RECJ_HAEIN/63-233 with E=10 starting O51269/73-370 with E=10 starting Q9Z7Z0/82-250 with E=10 starting P94659/11-177 with E=10 starting O84453/81-249 with E=10 starting O67909/73-229 with E=10 starting P73518/80-246 with E=10 starting O83702/72-370 with E=10 starting O31903/58-212 with E=10 starting O25177/21-204 with E=10 starting O66728/1-143 with E=10 starting YYBT_BACSU/333-502 with E=10 starting Y371_MYCPN/15-167 with E=10 starting O34600/8-159 with E=10 starting MGPA_MYCGE/55-209 with E=10 starting MGPA_MYCPN/17-173 with E=10 starting O67552/12-160 with E=10 starting O51564/17-170 with E=10 starting O83450/37-192 with E=10 starting P71615/29-184 with E=10 starting P72962/61-231 with E=10 starting YG33_METJA/160-312 with E=10 starting O28250/152-306 with E=10 starting O58017/157-321 with E=10 starting O73979/14-165 with E=10 starting Y988_METJA/5-161 with E=10 starting O83781/33-211 with E=10 starting O25683/3-150 with E=10 starting O31824/1-143 with E=10 starting Q58598/358-537 with E=10 starting O26857/343-522 with E=10 starting O58078/350-531 with E=10 starting O28932/329-499 with E=10 starting O30161/24-173 with E=10 starting Y831_METJA/19-168 with E=10 starting O27473/31-174 with E=10 starting O57804/23-171 with E=10 starting O29559/20-162 with E=10 starting O29523/14-162 with E=10 starting Y977_METJA/15-169 with E=10 starting O26266/1-146 with E=10 starting O29950/1-131 with E=10 starting O25115/42-203 with E=10 starting Q9ZD22/80-250 with E=10 starting O32044/76-232 with E=10 starting RECJ_ECOLI/67-239 with E=10 starting RECJ_ERWCH/66-238 with E=10 starting RECJ_HAEIN/63-233 with E=10 starting O51269/73-370 with E=10 starting Q9Z7Z0/82-250 with E=10 starting P94659/11-177 with E=10 starting O84453/81-249 with E=10 starting O67909/73-229 with E=10 starting P73518/80-246 with E=10 starting O83702/72-370 with E=10 starting O31903/58-212 with E=10 starting O25177/21-204 with E=10 starting O66728/1-143 with E=10 starting YYBT_BACSU/333-502 with E=10 starting Y371_MYCPN/15-167 with E=10 starting O34600/8-159 with E=10 starting MGPA_MYCGE/55-209 with E=10 starting MGPA_MYCPN/17-173 with E=10 starting O67552/12-160 with E=10 starting O51564/17-170 with E=10 starting O83450/37-192 with E=10 starting P71615/29-184 with E=10 starting P72962/61-231 with E=10 starting YG33_METJA/160-312 with E=10 starting O28250/152-306 with E=10 starting O58017/157-321 with E=10 starting O73979/14-165 with E=10 starting Y988_METJA/5-161 with E=10 starting O83781/33-211 with E=10 starting O25683/3-150 with E=10 starting O31824/1-143 with E=10 /projects/compbio/experiments/casp4/scripts/double-blast -q pf01368-tuned.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > pf01368-tuned-double-blast.rdb starting Q58598/358-537 with E=0.000050 Q58598/358-537 Q58598/358-537 blasting: Q58598/358-537 gi|2128720|pir||E64449_358:537 blasting: Q58598/358-537 gi|7450088|pir||A69202_343:519 blasting: Q58598/358-537 gi|7450090|pir||H69416_329:477 blasting: Q58598/358-537 gi|7450090|pir||H69416_447:496 blasting: Q58598/358-537 gi|7450090|pir||H69416_317:354 blasting: Q58598/358-537 gi|7450089|pir||A71141_350:528 blasting: Q58598/358-537 gi|7450091|pir||A75011_350:528 blasting: starting O26857/343-522 with E=0.000050 O26857/343-522 O26857/343-522 blasting: O26857/343-522 gi|2128720|pir||E64449_358:534 blasting: O26857/343-522 gi|7450088|pir||A69202_343:522 blasting: O26857/343-522 gi|7450090|pir||H69416_329:477 blasting: O26857/343-522 gi|7450089|pir||A71141_350:528 blasting: O26857/343-522 gi|7450091|pir||A75011_350:528 blasting: starting O58078/350-531 with E=0.000050 O58078/350-531 O58078/350-531 blasting: O58078/350-531 gi|2128720|pir||E64449_358:530 blasting: O58078/350-531 gi|7450088|pir||A69202_343:515 blasting: O58078/350-531 gi|7450090|pir||H69416_329:481 blasting: O58078/350-531 gi|7450089|pir||A71141_350:531 blasting: O58078/350-531 gi|7450091|pir||A75011_350:531 blasting: starting O28932/329-499 with E=0.000050 O28932/329-499 O28932/329-499 blasting: O28932/329-499 gi|2128720|pir||E64449_358:534 blasting: O28932/329-499 gi|7450088|pir||A69202_343:497 blasting: O28932/329-499 gi|7450090|pir||H69416_329:496 blasting: O28932/329-499 gi|7450089|pir||A71141_350:506 blasting: O28932/329-499 gi|7450089|pir||A71141_517:528 blasting: O28932/329-499 gi|7450091|pir||A75011_350:528 blasting: starting O30161/24-173 with E=0.000050 O30161/24-173 O30161/24-173 blasting: O30161/24-173 gi|7482966|pir||C69259_67:173 blasting: O30161/24-173 gi|7482966|pir||C69259_26:66 blasting: starting Y831_METJA/19-168 with E=0.000050 Y831_METJA/19-168 Y831_METJA/19-168 blasting: Y831_METJA/19-168 gi|2833617|sp|Q58241|Y831_METJA_77:167 blasting: Y831_METJA/19-168 gi|2833617|sp|Q58241|Y831_METJA_20:76 blasting: Y831_METJA/19-168 gi|7450700|pir||B69086_55:145 blasting: Y831_METJA/19-168 gi|7450700|pir||B69086_8:31 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_89:173 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_38:85 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_259:272 blasting: Y831_METJA/19-168 gi|7450702|pir||C69337_74:161 blasting: Y831_METJA/19-168 gi|7450702|pir||C69337_24:65 blasting: Y831_METJA/19-168 gi|7450704|pir||H71224_81:170 blasting: Y831_METJA/19-168 gi|7450704|pir||H71224_30:77 blasting: Y831_METJA/19-168 gi|7450703|pir||G75192_82:171 blasting: Y831_METJA/19-168 gi|7450703|pir||G75192_31:79 blasting: starting O27473/31-174 with E=0.000050 O27473/31-174 O27473/31-174 blasting: O27473/31-174 gi|2833617|sp|Q58241|Y831_METJA_67:167 blasting: O27473/31-174 gi|2833617|sp|Q58241|Y831_METJA_26:65 blasting: O27473/31-174 gi|7450701|pir||E69056_79:173 blasting: O27473/31-174 gi|7450701|pir||E69056_31:78 blasting: O27473/31-174 gi|7450702|pir||C69337_70:161 blasting: O27473/31-174 gi|7450702|pir||C69337_23:67 blasting: O27473/31-174 gi|7450704|pir||H71224_23:69 blasting: O27473/31-174 gi|7450704|pir||H71224_71:170 blasting: O27473/31-174 gi|7450704|pir||H71224_273:285 blasting: O27473/31-174 gi|7450703|pir||G75192_24:70 blasting: O27473/31-174 gi|7450703|pir||G75192_72:171 blasting: O27473/31-174 gi|7450703|pir||G75192_274:286 blasting: starting O57804/23-171 with E=0.000050 O57804/23-171 O57804/23-171 blasting: O57804/23-171 gi|2833617|sp|Q58241|Y831_METJA_62:167 blasting: O57804/23-171 gi|2833617|sp|Q58241|Y831_METJA_26:60 blasting: O57804/23-171 gi|2842584|sp|Q58387|RECJ_METJA_58:168 blasting: O57804/23-171 gi|2842584|sp|Q58387|RECJ_METJA_22:57 blasting: O57804/23-171 gi|7450700|pir||B69086_55:145 blasting: O57804/23-171 gi|7450700|pir||B69086_2:41 blasting: O57804/23-171 gi|7450701|pir||E69056_31:73 blasting: O57804/23-171 gi|7450701|pir||E69056_74:170 blasting: O57804/23-171 gi|7450701|pir||E69056_110:173 blasting: O57804/23-171 gi|7450702|pir||C69337_70:161 blasting: O57804/23-171 gi|7450702|pir||C69337_27:61 blasting: O57804/23-171 gi|7450704|pir||H71224_66:170 blasting: O57804/23-171 gi|7450704|pir||H71224_23:65 blasting: O57804/23-171 gi|7450703|pir||G75192_67:171 blasting: O57804/23-171 gi|7450703|pir||G75192_24:66 blasting: starting O29559/20-162 with E=0.000050 O29559/20-162 O29559/20-162 blasting: O29559/20-162 gi|2833617|sp|Q58241|Y831_METJA_80:167 blasting: O29559/20-162 gi|2833617|sp|Q58241|Y831_METJA_23:64 blasting: O29559/20-162 gi|2842584|sp|Q58387|RECJ_METJA_72:168 blasting: O29559/20-162 gi|2842584|sp|Q58387|RECJ_METJA_18:56 blasting: O29559/20-162 gi|7450701|pir||E69056_89:173 blasting: O29559/20-162 gi|7450701|pir||E69056_34:78 blasting: O29559/20-162 gi|7450702|pir||C69337_71:162 blasting: O29559/20-162 gi|7450702|pir||C69337_21:70 blasting: O29559/20-162 gi|7450704|pir||H71224_80:170 blasting: O29559/20-162 gi|7450704|pir||H71224_30:68 blasting: O29559/20-162 gi|7450703|pir||G75192_81:171 blasting: O29559/20-162 gi|7450703|pir||G75192_31:69 blasting: starting O29523/14-162 with E=0.000050 O29523/14-162 O29523/14-162 blasting: O29523/14-162 gi|7450705|pir||G69341_80:161 blasting: O29523/14-162 gi|7450705|pir||G69341_15:67 blasting: O29523/14-162 gi|7450705|pir||G69341_68:116 blasting: starting Y977_METJA/15-169 with E=0.000050 Y977_METJA/15-169 Y977_METJA/15-169 blasting: Y977_METJA/15-169 gi|2842584|sp|Q58387|RECJ_METJA_58:169 blasting: Y977_METJA/15-169 gi|2842584|sp|Q58387|RECJ_METJA_17:57 blasting: Y977_METJA/15-169 gi|7450700|pir||B69086_38:146 blasting: Y977_METJA/15-169 gi|7450700|pir||B69086_8:35 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_66:151 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_98:170 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_30:65 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_67:152 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_101:171 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_31:66 blasting: starting O26266/1-146 with E=0.000050 O26266/1-146 O26266/1-146 blasting: O26266/1-146 gi|2833617|sp|Q58241|Y831_METJA_80:167 blasting: O26266/1-146 gi|2833617|sp|Q58241|Y831_METJA_26:49 blasting: O26266/1-146 gi|2842584|sp|Q58387|RECJ_METJA_72:169 blasting: O26266/1-146 gi|2842584|sp|Q58387|RECJ_METJA_22:67 blasting: O26266/1-146 gi|7450700|pir||B69086_52:146 blasting: O26266/1-146 gi|7450700|pir||B69086_2:51 blasting: O26266/1-146 gi|7450702|pir||C69337_73:161 blasting: O26266/1-146 gi|7450702|pir||C69337_21:70 blasting: O26266/1-146 gi|7450704|pir||H71224_81:170 blasting: O26266/1-146 gi|7450704|pir||H71224_24:63 blasting: O26266/1-146 gi|7450703|pir||G75192_84:171 blasting: O26266/1-146 gi|7450703|pir||G75192_25:64 blasting: starting O29950/1-131 with E=0.000050 O29950/1-131 O29950/1-131 blasting: O29950/1-131 gi|7483398|pir||C69286_41:116 blasting: O29950/1-131 gi|7483398|pir||C69286_1:40 blasting: O29950/1-131 gi|7483398|pir||C69286_117:130 blasting: O29950/1-131 gi|7518174|pir||C75097_37:111 blasting: O29950/1-131 gi|7518174|pir||C75097_3:36 blasting: O29950/1-131 gi|7518174|pir||C75097_113:126 blasting: O29950/1-131 gi|7518174|pir||C75097_162:173 blasting: starting O25115/42-203 with E=0.000050 O25115/42-203 O25115/42-203 blasting: O25115/42-203 gi|96357|pir||C39202_131:240 blasting: O25115/42-203 gi|96357|pir||C39202_70:125 blasting: O25115/42-203 gi|2507106|sp|P21893|RECJ_ECOLI_130:239 blasting: O25115/42-203 gi|2507106|sp|P21893|RECJ_ECOLI_69:124 blasting: O25115/42-203 gi|1172895|sp|P45112|RECJ_HAEIN_128:233 blasting: O25115/42-203 gi|1172895|sp|P45112|RECJ_HAEIN_69:114 blasting: O25115/42-203 gi|2507107|sp|P39693|RECJ_ERWCH_129:238 blasting: O25115/42-203 gi|2507107|sp|P39693|RECJ_ERWCH_70:117 blasting: O25115/42-203 gi|7451683|pir||D64563_101:203 blasting: O25115/42-203 gi|7451683|pir||D64563_43:100 blasting: O25115/42-203 gi|7475820|pir||H69980_140:232 blasting: O25115/42-203 gi|7475820|pir||H69980_82:124 blasting: O25115/42-203 gi|3063673|gb|AAC14136.1|_75:175 blasting: O25115/42-203 gi|3063673|gb|AAC14136.1|_15:67 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_136:206 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_74:126 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_357:370 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_136:206 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_74:126 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_357:370 blasting: O25115/42-203 gi|7451682|pir||B71946_101:203 blasting: O25115/42-203 gi|7451682|pir||B71946_43:100 blasting: O25115/42-203 gi|7462837|pir||F72243_137:231 blasting: O25115/42-203 gi|7462837|pir||F72243_76:121 blasting: O25115/42-203 gi|7473679|pir||E75434_64:162 blasting: O25115/42-203 gi|7473679|pir||E75434_4:60 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_108:204 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_51:103 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_455:469 blasting: O25115/42-203 gi|7226077|gb|AAF41253.1|_132:237 blasting: O25115/42-203 gi|7226077|gb|AAF41253.1|_74:123 blasting: O25115/42-203 gi|7228156|emb|CAB77039.1|_132:237 blasting: O25115/42-203 gi|7228156|emb|CAB77039.1|_74:124 blasting: O25115/42-203 gi|7379749|emb|CAB84317.1|_132:236 blasting: O25115/42-203 gi|7379749|emb|CAB84317.1|_74:123 blasting: O25115/42-203 gi|7453624|gb|AAF62912.1|_132:237 blasting: O25115/42-203 gi|7453624|gb|AAF62912.1|_74:123 blasting: O25115/42-203 gi|9106065|gb|AAF83920.1|AE003946_11_44:100 blasting: O25115/42-203 gi|9106065|gb|AAF83920.1|AE003946_11_108:226 blasting: O25115/42-203 gi|9656991|gb|AAF95560.1|_132:241 blasting: O25115/42-203 gi|9656991|gb|AAF95560.1|_76:126 blasting: starting Q9ZD22/80-250 with E=0.000050 Q9ZD22/80-250 Q9ZD22/80-250 blasting: Q9ZD22/80-250 gi|96357|pir||C39202_120:239 blasting: Q9ZD22/80-250 gi|96357|pir||C39202_74:117 blasting: Q9ZD22/80-250 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: Q9ZD22/80-250 gi|2507106|sp|P21893|RECJ_ECOLI_73:116 blasting: Q9ZD22/80-250 gi|1172895|sp|P45112|RECJ_HAEIN_116:232 blasting: Q9ZD22/80-250 gi|1172895|sp|P45112|RECJ_HAEIN_68:112 blasting: Q9ZD22/80-250 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: Q9ZD22/80-250 gi|2507107|sp|P39693|RECJ_ERWCH_66:115 blasting: Q9ZD22/80-250 gi|7470865|pir||S77224_137:245 blasting: Q9ZD22/80-250 gi|7470865|pir||S77224_80:131 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_129:214 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_76:125 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_191:231 blasting: Q9ZD22/80-250 gi|3063673|gb|AAC14136.1|_67:175 blasting: Q9ZD22/80-250 gi|3063673|gb|AAC14136.1|_15:44 blasting: Q9ZD22/80-250 gi|7451688|pir||H71513_141:247 blasting: Q9ZD22/80-250 gi|7451688|pir||H71513_81:131 blasting: Q9ZD22/80-250 gi|7451686|pir||G71656_131:249 blasting: Q9ZD22/80-250 gi|7451686|pir||G71656_80:130 blasting: Q9ZD22/80-250 gi|7451687|pir||D72062_138:248 blasting: Q9ZD22/80-250 gi|7451687|pir||D72062_87:132 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_123:206 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_76:120 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_172:231 blasting: Q9ZD22/80-250 gi|6967533|emb|CAB72521.1|_108:155 blasting: Q9ZD22/80-250 gi|6967533|emb|CAB72521.1|_47:95 blasting: Q9ZD22/80-250 gi|7190761|gb|AAF39542.1|_141:247 blasting: Q9ZD22/80-250 gi|7190761|gb|AAF39542.1|_84:129 blasting: Q9ZD22/80-250 gi|7226077|gb|AAF41253.1|_129:236 blasting: Q9ZD22/80-250 gi|7226077|gb|AAF41253.1|_68:118 blasting: Q9ZD22/80-250 gi|7228156|emb|CAB77039.1|_119:236 blasting: Q9ZD22/80-250 gi|7228156|emb|CAB77039.1|_67:116 blasting: Q9ZD22/80-250 gi|7379749|emb|CAB84317.1|_129:236 blasting: Q9ZD22/80-250 gi|7379749|emb|CAB84317.1|_68:118 blasting: Q9ZD22/80-250 gi|7453624|gb|AAF62912.1|_129:236 blasting: Q9ZD22/80-250 gi|7453624|gb|AAF62912.1|_68:118 blasting: Q9ZD22/80-250 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: Q9ZD22/80-250 gi|9106065|gb|AAF83920.1|AE003946_11_49:92 blasting: Q9ZD22/80-250 gi|9656991|gb|AAF95560.1|_131:240 blasting: Q9ZD22/80-250 gi|9656991|gb|AAF95560.1|_69:118 blasting: starting O32044/76-232 with E=0.000050 O32044/76-232 O32044/76-232 blasting: O32044/76-232 gi|96357|pir||C39202_129:239 blasting: O32044/76-232 gi|96357|pir||C39202_68:117 blasting: O32044/76-232 gi|2507106|sp|P21893|RECJ_ECOLI_128:238 blasting: O32044/76-232 gi|2507106|sp|P21893|RECJ_ECOLI_67:116 blasting: O32044/76-232 gi|1172895|sp|P45112|RECJ_HAEIN_123:232 blasting: O32044/76-232 gi|1172895|sp|P45112|RECJ_HAEIN_63:112 blasting: O32044/76-232 gi|2507107|sp|P39693|RECJ_ERWCH_127:237 blasting: O32044/76-232 gi|2507107|sp|P39693|RECJ_ERWCH_66:115 blasting: O32044/76-232 gi|7470865|pir||S77224_143:245 blasting: O32044/76-232 gi|7470865|pir||S77224_80:133 blasting: O32044/76-232 gi|7451683|pir||D64563_104:202 blasting: O32044/76-232 gi|7451683|pir||D64563_42:91 blasting: O32044/76-232 gi|7475820|pir||H69980_127:231 blasting: O32044/76-232 gi|7475820|pir||H69980_76:126 blasting: O32044/76-232 gi|7463775|pir||F70131_131:169 blasting: O32044/76-232 gi|7463775|pir||F70131_73:120 blasting: O32044/76-232 gi|7463775|pir||F70131_188:206 blasting: O32044/76-232 gi|7463775|pir||F70131_357:367 blasting: O32044/76-232 gi|7451685|pir||A70485_73:122 blasting: O32044/76-232 gi|7451685|pir||A70485_127:226 blasting: O32044/76-232 gi|3063673|gb|AAC14136.1|_68:175 blasting: O32044/76-232 gi|3063673|gb|AAC14136.1|_11:59 blasting: O32044/76-232 gi|7521421|pir||D71289_132:204 blasting: O32044/76-232 gi|7521421|pir||D71289_72:119 blasting: O32044/76-232 gi|7521421|pir||D71289_357:369 blasting: O32044/76-232 gi|7451688|pir||H71513_142:247 blasting: O32044/76-232 gi|7451688|pir||H71513_81:118 blasting: O32044/76-232 gi|7451686|pir||G71656_133:218 blasting: O32044/76-232 gi|7451686|pir||G71656_80:129 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_131:169 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_73:120 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_188:206 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_357:367 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_131:169 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_73:120 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_188:206 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_357:367 blasting: O32044/76-232 gi|7451682|pir||B71946_104:202 blasting: O32044/76-232 gi|7451682|pir||B71946_42:91 blasting: O32044/76-232 gi|7451687|pir||D72062_139:248 blasting: O32044/76-232 gi|7451687|pir||D72062_82:120 blasting: O32044/76-232 gi|7462837|pir||F72243_128:231 blasting: O32044/76-232 gi|7462837|pir||F72243_72:120 blasting: O32044/76-232 gi|7473679|pir||E75434_66:160 blasting: O32044/76-232 gi|7473679|pir||E75434_3:51 blasting: O32044/76-232 gi|6967533|emb|CAB72521.1|_101:204 blasting: O32044/76-232 gi|6967533|emb|CAB72521.1|_47:97 blasting: O32044/76-232 gi|7190761|gb|AAF39542.1|_142:247 blasting: O32044/76-232 gi|7190761|gb|AAF39542.1|_86:118 blasting: O32044/76-232 gi|7226077|gb|AAF41253.1|_128:236 blasting: O32044/76-232 gi|7226077|gb|AAF41253.1|_68:116 blasting: O32044/76-232 gi|7228156|emb|CAB77039.1|_132:236 blasting: O32044/76-232 gi|7228156|emb|CAB77039.1|_67:116 blasting: O32044/76-232 gi|7379749|emb|CAB84317.1|_128:236 blasting: O32044/76-232 gi|7379749|emb|CAB84317.1|_68:116 blasting: O32044/76-232 gi|7453624|gb|AAF62912.1|_128:236 blasting: O32044/76-232 gi|7453624|gb|AAF62912.1|_68:116 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_107:182 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_44:92 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_212:225 blasting: O32044/76-232 gi|9656991|gb|AAF95560.1|_129:240 blasting: O32044/76-232 gi|9656991|gb|AAF95560.1|_69:118 blasting: starting RECJ_ECOLI/67-239 with E=0.000050 RECJ_ECOLI/67-239 RECJ_ECOLI/67-239 blasting: RECJ_ECOLI/67-239 gi|96357|pir||C39202_120:239 blasting: RECJ_ECOLI/67-239 gi|96357|pir||C39202_69:119 blasting: RECJ_ECOLI/67-239 gi|625706|pir||S44445_68:96 blasting: RECJ_ECOLI/67-239 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: RECJ_ECOLI/67-239 gi|2507106|sp|P21893|RECJ_ECOLI_68:118 blasting: RECJ_ECOLI/67-239 gi|1172895|sp|P45112|RECJ_HAEIN_117:232 blasting: RECJ_ECOLI/67-239 gi|1172895|sp|P45112|RECJ_HAEIN_69:114 blasting: RECJ_ECOLI/67-239 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: RECJ_ECOLI/67-239 gi|2507107|sp|P39693|RECJ_ERWCH_69:117 blasting: RECJ_ECOLI/67-239 gi|7470865|pir||S77224_137:245 blasting: RECJ_ECOLI/67-239 gi|7470865|pir||S77224_86:133 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_102:204 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_44:93 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_141:202 blasting: RECJ_ECOLI/67-239 gi|7475820|pir||H69980_136:231 blasting: RECJ_ECOLI/67-239 gi|7475820|pir||H69980_82:124 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_124:212 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_75:122 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_343:367 blasting: RECJ_ECOLI/67-239 gi|3063673|gb|AAC14136.1|_75:175 blasting: RECJ_ECOLI/67-239 gi|3063673|gb|AAC14136.1|_18:42 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_125:218 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_78:121 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_354:369 blasting: RECJ_ECOLI/67-239 gi|7451688|pir||H71513_134:247 blasting: RECJ_ECOLI/67-239 gi|7451688|pir||H71513_88:113 blasting: RECJ_ECOLI/67-239 gi|7451686|pir||G71656_131:249 blasting: RECJ_ECOLI/67-239 gi|7451686|pir||G71656_86:128 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_124:212 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_75:122 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_343:367 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_124:212 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_75:122 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_343:367 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_102:204 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_44:93 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_141:202 blasting: RECJ_ECOLI/67-239 gi|7451687|pir||D72062_143:248 blasting: RECJ_ECOLI/67-239 gi|7451687|pir||D72062_89:113 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_123:233 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_172:231 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_79:121 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_5:52 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_54:136 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_122:160 blasting: RECJ_ECOLI/67-239 gi|6967533|emb|CAB72521.1|_108:204 blasting: RECJ_ECOLI/67-239 gi|6967533|emb|CAB72521.1|_53:97 blasting: RECJ_ECOLI/67-239 gi|7190761|gb|AAF39542.1|_134:247 blasting: RECJ_ECOLI/67-239 gi|7190761|gb|AAF39542.1|_88:113 blasting: RECJ_ECOLI/67-239 gi|7226077|gb|AAF41253.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7226077|gb|AAF41253.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|7228156|emb|CAB77039.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7228156|emb|CAB77039.1|_73:118 blasting: RECJ_ECOLI/67-239 gi|7379749|emb|CAB84317.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7379749|emb|CAB84317.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|7453624|gb|AAF62912.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7453624|gb|AAF62912.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: RECJ_ECOLI/67-239 gi|9106065|gb|AAF83920.1|AE003946_11_49:94 blasting: RECJ_ECOLI/67-239 gi|9656991|gb|AAF95560.1|_121:240 blasting: RECJ_ECOLI/67-239 gi|9656991|gb|AAF95560.1|_72:120 blasting: starting RECJ_ERWCH/66-238 with E=0.000050 RECJ_ERWCH/66-238 RECJ_ERWCH/66-238 blasting: RECJ_ERWCH/66-238 gi|96357|pir||C39202_120:239 blasting: RECJ_ERWCH/66-238 gi|96357|pir||C39202_68:119 blasting: RECJ_ERWCH/66-238 gi|625706|pir||S44445_65:98 blasting: RECJ_ERWCH/66-238 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: RECJ_ERWCH/66-238 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: RECJ_ERWCH/66-238 gi|1172895|sp|P45112|RECJ_HAEIN_117:232 blasting: RECJ_ERWCH/66-238 gi|1172895|sp|P45112|RECJ_HAEIN_63:114 blasting: RECJ_ERWCH/66-238 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: RECJ_ERWCH/66-238 gi|2507107|sp|P39693|RECJ_ERWCH_66:117 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_164:245 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_143:217 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_80:133 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_236:261 blasting: RECJ_ERWCH/66-238 gi|7451683|pir||D64563_102:202 blasting: RECJ_ERWCH/66-238 gi|7451683|pir||D64563_42:93 blasting: RECJ_ERWCH/66-238 gi|7475820|pir||H69980_136:231 blasting: RECJ_ERWCH/66-238 gi|7475820|pir||H69980_76:124 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_124:206 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_73:122 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_357:367 blasting: RECJ_ERWCH/66-238 gi|3063673|gb|AAC14136.1|_64:175 blasting: RECJ_ERWCH/66-238 gi|3063673|gb|AAC14136.1|_15:59 blasting: RECJ_ERWCH/66-238 gi|7451688|pir||H71513_134:247 blasting: RECJ_ERWCH/66-238 gi|7451688|pir||H71513_81:115 blasting: RECJ_ERWCH/66-238 gi|7451686|pir||G71656_131:249 blasting: RECJ_ERWCH/66-238 gi|7451686|pir||G71656_80:128 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_124:206 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_73:122 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_357:367 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_124:206 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_73:122 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_357:367 blasting: RECJ_ERWCH/66-238 gi|7451682|pir||B71946_102:202 blasting: RECJ_ERWCH/66-238 gi|7451682|pir||B71946_42:93 blasting: RECJ_ERWCH/66-238 gi|7451687|pir||D72062_135:248 blasting: RECJ_ERWCH/66-238 gi|7462837|pir||F72243_123:206 blasting: RECJ_ERWCH/66-238 gi|7462837|pir||F72243_72:121 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_61:140 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_3:52 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_123:160 blasting: RECJ_ERWCH/66-238 gi|6967533|emb|CAB72521.1|_108:204 blasting: RECJ_ERWCH/66-238 gi|6967533|emb|CAB72521.1|_47:97 blasting: RECJ_ERWCH/66-238 gi|7190761|gb|AAF39542.1|_134:247 blasting: RECJ_ERWCH/66-238 gi|7226077|gb|AAF41253.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7226077|gb|AAF41253.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|7228156|emb|CAB77039.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7228156|emb|CAB77039.1|_67:118 blasting: RECJ_ERWCH/66-238 gi|7379749|emb|CAB84317.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7379749|emb|CAB84317.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|7453624|gb|AAF62912.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7453624|gb|AAF62912.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|9106065|gb|AAF83920.1|AE003946_11_102:225 blasting: RECJ_ERWCH/66-238 gi|9106065|gb|AAF83920.1|AE003946_11_47:94 blasting: RECJ_ERWCH/66-238 gi|9656991|gb|AAF95560.1|_121:240 blasting: RECJ_ERWCH/66-238 gi|9656991|gb|AAF95560.1|_69:120 blasting: starting RECJ_HAEIN/63-233 with E=0.000050 RECJ_HAEIN/63-233 RECJ_HAEIN/63-233 blasting: RECJ_HAEIN/63-233 gi|96357|pir||C39202_122:239 blasting: RECJ_HAEIN/63-233 gi|96357|pir||C39202_74:119 blasting: RECJ_HAEIN/63-233 gi|2507106|sp|P21893|RECJ_ECOLI_121:238 blasting: RECJ_HAEIN/63-233 gi|2507106|sp|P21893|RECJ_ECOLI_73:118 blasting: RECJ_HAEIN/63-233 gi|1172895|sp|P45112|RECJ_HAEIN_115:232 blasting: RECJ_HAEIN/63-233 gi|1172895|sp|P45112|RECJ_HAEIN_65:114 blasting: RECJ_HAEIN/63-233 gi|2507107|sp|P39693|RECJ_ERWCH_120:237 blasting: RECJ_HAEIN/63-233 gi|2507107|sp|P39693|RECJ_ERWCH_71:117 blasting: RECJ_HAEIN/63-233 gi|7470865|pir||S77224_135:245 blasting: RECJ_HAEIN/63-233 gi|7470865|pir||S77224_84:133 blasting: RECJ_HAEIN/63-233 gi|7451683|pir||D64563_92:202 blasting: RECJ_HAEIN/63-233 gi|7451683|pir||D64563_48:93 blasting: RECJ_HAEIN/63-233 gi|7475820|pir||H69980_135:231 blasting: RECJ_HAEIN/63-233 gi|7475820|pir||H69980_80:124 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_129:213 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_78:122 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_357:367 blasting: RECJ_HAEIN/63-233 gi|3063673|gb|AAC14136.1|_65:175 blasting: RECJ_HAEIN/63-233 gi|3063673|gb|AAC14136.1|_16:59 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_132:205 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_76:121 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_355:369 blasting: RECJ_HAEIN/63-233 gi|7451688|pir||H71513_135:247 blasting: RECJ_HAEIN/63-233 gi|7451688|pir||H71513_86:113 blasting: RECJ_HAEIN/63-233 gi|7451686|pir||G71656_131:249 blasting: RECJ_HAEIN/63-233 gi|7451686|pir||G71656_85:128 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_129:213 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_78:122 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_357:367 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_129:213 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_78:122 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_357:367 blasting: RECJ_HAEIN/63-233 gi|7451682|pir||B71946_92:202 blasting: RECJ_HAEIN/63-233 gi|7451682|pir||B71946_48:93 blasting: RECJ_HAEIN/63-233 gi|7451687|pir||D72062_141:248 blasting: RECJ_HAEIN/63-233 gi|7451687|pir||D72062_86:113 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_131:206 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_172:231 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_79:121 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_66:141 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_8:52 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_122:160 blasting: RECJ_HAEIN/63-233 gi|6967533|emb|CAB72521.1|_98:204 blasting: RECJ_HAEIN/63-233 gi|6967533|emb|CAB72521.1|_49:97 blasting: RECJ_HAEIN/63-233 gi|7190761|gb|AAF39542.1|_135:247 blasting: RECJ_HAEIN/63-233 gi|7190761|gb|AAF39542.1|_86:113 blasting: RECJ_HAEIN/63-233 gi|7226077|gb|AAF41253.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7226077|gb|AAF41253.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|7228156|emb|CAB77039.1|_132:236 blasting: RECJ_HAEIN/63-233 gi|7228156|emb|CAB77039.1|_71:118 blasting: RECJ_HAEIN/63-233 gi|7379749|emb|CAB84317.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7379749|emb|CAB84317.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|7453624|gb|AAF62912.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7453624|gb|AAF62912.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: RECJ_HAEIN/63-233 gi|9106065|gb|AAF83920.1|AE003946_11_49:94 blasting: RECJ_HAEIN/63-233 gi|9656991|gb|AAF95560.1|_123:240 blasting: RECJ_HAEIN/63-233 gi|9656991|gb|AAF95560.1|_73:120 blasting: starting O51269/73-370 with E=0.000050 O51269/73-370 O51269/73-370 blasting: O51269/73-370 gi|96357|pir||C39202_121:202 blasting: O51269/73-370 gi|96357|pir||C39202_68:119 blasting: O51269/73-370 gi|96357|pir||C39202_213:240 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_120:201 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_212:239 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_121:197 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_63:114 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_220:233 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_509:563 blasting: O51269/73-370 gi|2507107|sp|P39693|RECJ_ERWCH_119:200 blasting: O51269/73-370 gi|2507107|sp|P39693|RECJ_ERWCH_225:238 blasting: O51269/73-370 gi|7475820|pir||H69980_135:205 blasting: O51269/73-370 gi|7475820|pir||H69980_76:116 blasting: O51269/73-370 gi|7475820|pir||H69980_219:232 blasting: O51269/73-370 gi|7463775|pir||F70131_206:370 blasting: O51269/73-370 gi|7463775|pir||F70131_123:205 blasting: O51269/73-370 gi|7463775|pir||F70131_73:122 blasting: O51269/73-370 gi|7463775|pir||F70131_635:700 blasting: O51269/73-370 gi|7463775|pir||F70131_444:505 blasting: O51269/73-370 gi|7463775|pir||F70131_433:521 blasting: O51269/73-370 gi|7463775|pir||F70131_312:415 blasting: O51269/73-370 gi|3063673|gb|AAC14136.1|_62:140 blasting: O51269/73-370 gi|3063673|gb|AAC14136.1|_11:48 blasting: O51269/73-370 gi|7521421|pir||D71289_72:121 blasting: O51269/73-370 gi|7521421|pir||D71289_134:203 blasting: O51269/73-370 gi|7451688|pir||H71513_134:214 blasting: O51269/73-370 gi|7451688|pir||H71513_84:118 blasting: O51269/73-370 gi|7451688|pir||H71513_205:246 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_206:370 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_123:205 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_73:122 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_309:415 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_206:370 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_123:205 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_73:122 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_309:415 blasting: O51269/73-370 gi|7451687|pir||D72062_135:211 blasting: O51269/73-370 gi|7451687|pir||D72062_87:119 blasting: O51269/73-370 gi|7451687|pir||D72062_222:247 blasting: O51269/73-370 gi|7462837|pir||F72243_124:201 blasting: O51269/73-370 gi|7462837|pir||F72243_72:112 blasting: O51269/73-370 gi|7462837|pir||F72243_219:229 blasting: O51269/73-370 gi|7473679|pir||E75434_66:112 blasting: O51269/73-370 gi|7473679|pir||E75434_3:43 blasting: O51269/73-370 gi|6967533|emb|CAB72521.1|_99:172 blasting: O51269/73-370 gi|6967533|emb|CAB72521.1|_47:88 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_134:214 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_83:118 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_205:246 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_120:200 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_68:118 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_224:237 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_120:200 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_68:118 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_224:234 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_120:195 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_68:118 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_224:237 blasting: O51269/73-370 gi|9656991|gb|AAF95560.1|_122:203 blasting: O51269/73-370 gi|9656991|gb|AAF95560.1|_223:241 blasting: starting Q9Z7Z0/82-250 with E=0.000050 Q9Z7Z0/82-250 Q9Z7Z0/82-250 blasting: Q9Z7Z0/82-250 gi|96357|pir||C39202_130:238 blasting: Q9Z7Z0/82-250 gi|96357|pir||C39202_75:99 blasting: Q9Z7Z0/82-250 gi|2507106|sp|P21893|RECJ_ECOLI_129:237 blasting: Q9Z7Z0/82-250 gi|2507106|sp|P21893|RECJ_ECOLI_74:98 blasting: Q9Z7Z0/82-250 gi|1172895|sp|P45112|RECJ_HAEIN_123:231 blasting: Q9Z7Z0/82-250 gi|1172895|sp|P45112|RECJ_HAEIN_67:94 blasting: Q9Z7Z0/82-250 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: Q9Z7Z0/82-250 gi|7470865|pir||S77224_137:244 blasting: Q9Z7Z0/82-250 gi|7470865|pir||S77224_83:131 blasting: Q9Z7Z0/82-250 gi|7475820|pir||H69980_133:230 blasting: Q9Z7Z0/82-250 gi|7475820|pir||H69980_79:114 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_125:219 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_78:110 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_346:367 blasting: Q9Z7Z0/82-250 gi|3063673|gb|AAC14136.1|_62:176 blasting: Q9Z7Z0/82-250 gi|3063673|gb|AAC14136.1|_12:60 blasting: Q9Z7Z0/82-250 gi|7451688|pir||H71513_132:248 blasting: Q9Z7Z0/82-250 gi|7451688|pir||H71513_86:131 blasting: Q9Z7Z0/82-250 gi|7451686|pir||G71656_136:248 blasting: Q9Z7Z0/82-250 gi|7451686|pir||G71656_85:130 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_125:219 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_78:110 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_346:367 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_125:219 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_78:110 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_346:367 blasting: Q9Z7Z0/82-250 gi|7451687|pir||D72062_133:249 blasting: Q9Z7Z0/82-250 gi|7451687|pir||D72062_83:132 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_126:209 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_145:230 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_73:113 blasting: Q9Z7Z0/82-250 gi|7473679|pir||E75434_66:160 blasting: Q9Z7Z0/82-250 gi|7473679|pir||E75434_8:41 blasting: Q9Z7Z0/82-250 gi|6967533|emb|CAB72521.1|_101:203 blasting: Q9Z7Z0/82-250 gi|6967533|emb|CAB72521.1|_49:78 blasting: Q9Z7Z0/82-250 gi|7190761|gb|AAF39542.1|_132:248 blasting: Q9Z7Z0/82-250 gi|7190761|gb|AAF39542.1|_82:130 blasting: Q9Z7Z0/82-250 gi|7226077|gb|AAF41253.1|_128:235 blasting: Q9Z7Z0/82-250 gi|7228156|emb|CAB77039.1|_132:235 blasting: Q9Z7Z0/82-250 gi|7379749|emb|CAB84317.1|_128:235 blasting: Q9Z7Z0/82-250 gi|7453624|gb|AAF62912.1|_128:235 blasting: Q9Z7Z0/82-250 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: Q9Z7Z0/82-250 gi|9106065|gb|AAF83920.1|AE003946_11_50:72 blasting: Q9Z7Z0/82-250 gi|9656991|gb|AAF95560.1|_129:239 blasting: Q9Z7Z0/82-250 gi|9656991|gb|AAF95560.1|_73:98 blasting: starting P94659/11-177 with E=0.000050 P94659/11-177 P94659/11-177 blasting: P94659/11-177 gi|96357|pir||C39202_133:238 blasting: P94659/11-177 gi|96357|pir||C39202_75:99 blasting: P94659/11-177 gi|2507106|sp|P21893|RECJ_ECOLI_132:237 blasting: P94659/11-177 gi|2507106|sp|P21893|RECJ_ECOLI_74:98 blasting: P94659/11-177 gi|1172895|sp|P45112|RECJ_HAEIN_117:231 blasting: P94659/11-177 gi|1172895|sp|P45112|RECJ_HAEIN_63:112 blasting: P94659/11-177 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: P94659/11-177 gi|2507107|sp|P39693|RECJ_ERWCH_70:115 blasting: P94659/11-177 gi|7470865|pir||S77224_137:244 blasting: P94659/11-177 gi|7470865|pir||S77224_80:131 blasting: P94659/11-177 gi|7475820|pir||H69980_133:230 blasting: P94659/11-177 gi|7475820|pir||H69980_76:124 blasting: P94659/11-177 gi|7463775|pir||F70131_123:201 blasting: P94659/11-177 gi|7463775|pir||F70131_73:110 blasting: P94659/11-177 gi|3063673|gb|AAC14136.1|_62:176 blasting: P94659/11-177 gi|3063673|gb|AAC14136.1|_11:61 blasting: P94659/11-177 gi|7451688|pir||H71513_132:248 blasting: P94659/11-177 gi|7451688|pir||H71513_81:130 blasting: P94659/11-177 gi|7451686|pir||G71656_136:248 blasting: P94659/11-177 gi|7451686|pir||G71656_84:113 blasting: P94659/11-177 gi|4101624|gb|AAD01239.1|_123:201 blasting: P94659/11-177 gi|4101624|gb|AAD01239.1|_73:110 blasting: P94659/11-177 gi|4102237|gb|AAD09318.1|_123:201 blasting: P94659/11-177 gi|4102237|gb|AAD09318.1|_73:110 blasting: P94659/11-177 gi|7451682|pir||B71946_97:201 blasting: P94659/11-177 gi|7451682|pir||B71946_42:91 blasting: P94659/11-177 gi|7451687|pir||D72062_133:249 blasting: P94659/11-177 gi|7451687|pir||D72062_82:131 blasting: P94659/11-177 gi|7462837|pir||F72243_126:230 blasting: P94659/11-177 gi|7462837|pir||F72243_72:120 blasting: P94659/11-177 gi|7473679|pir||E75434_66:160 blasting: P94659/11-177 gi|7473679|pir||E75434_3:51 blasting: P94659/11-177 gi|6967533|emb|CAB72521.1|_101:203 blasting: P94659/11-177 gi|6967533|emb|CAB72521.1|_47:78 blasting: P94659/11-177 gi|7190761|gb|AAF39542.1|_132:248 blasting: P94659/11-177 gi|7190761|gb|AAF39542.1|_81:130 blasting: P94659/11-177 gi|7226077|gb|AAF41253.1|_130:235 blasting: P94659/11-177 gi|7226077|gb|AAF41253.1|_71:116 blasting: P94659/11-177 gi|7228156|emb|CAB77039.1|_120:235 blasting: P94659/11-177 gi|7228156|emb|CAB77039.1|_74:116 blasting: P94659/11-177 gi|7379749|emb|CAB84317.1|_130:235 blasting: P94659/11-177 gi|7379749|emb|CAB84317.1|_68:116 blasting: P94659/11-177 gi|7453624|gb|AAF62912.1|_130:235 blasting: P94659/11-177 gi|7453624|gb|AAF62912.1|_68:116 blasting: P94659/11-177 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: P94659/11-177 gi|9106065|gb|AAF83920.1|AE003946_11_47:92 blasting: P94659/11-177 gi|9656991|gb|AAF95560.1|_129:239 blasting: P94659/11-177 gi|9656991|gb|AAF95560.1|_74:118 blasting: starting O84453/81-249 with E=0.000050 O84453/81-249 O84453/81-249 blasting: O84453/81-249 gi|96357|pir||C39202_122:238 blasting: O84453/81-249 gi|96357|pir||C39202_75:100 blasting: O84453/81-249 gi|2507106|sp|P21893|RECJ_ECOLI_121:237 blasting: O84453/81-249 gi|2507106|sp|P21893|RECJ_ECOLI_74:99 blasting: O84453/81-249 gi|1172895|sp|P45112|RECJ_HAEIN_117:231 blasting: O84453/81-249 gi|1172895|sp|P45112|RECJ_HAEIN_68:95 blasting: O84453/81-249 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: O84453/81-249 gi|7470865|pir||S77224_137:244 blasting: O84453/81-249 gi|7470865|pir||S77224_82:131 blasting: O84453/81-249 gi|7475820|pir||H69980_137:230 blasting: O84453/81-249 gi|7475820|pir||H69980_78:113 blasting: O84453/81-249 gi|7463775|pir||F70131_125:205 blasting: O84453/81-249 gi|7463775|pir||F70131_76:110 blasting: O84453/81-249 gi|7463775|pir||F70131_328:367 blasting: O84453/81-249 gi|3063673|gb|AAC14136.1|_62:176 blasting: O84453/81-249 gi|3063673|gb|AAC14136.1|_12:60 blasting: O84453/81-249 gi|7451688|pir||H71513_132:249 blasting: O84453/81-249 gi|7451688|pir||H71513_82:131 blasting: O84453/81-249 gi|7451686|pir||G71656_140:248 blasting: O84453/81-249 gi|7451686|pir||G71656_83:130 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_125:205 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_76:110 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_328:367 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_125:205 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_76:110 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_328:367 blasting: O84453/81-249 gi|7451687|pir||D72062_133:249 blasting: O84453/81-249 gi|7451687|pir||D72062_87:132 blasting: O84453/81-249 gi|7462837|pir||F72243_126:230 blasting: O84453/81-249 gi|7462837|pir||F72243_73:101 blasting: O84453/81-249 gi|7473679|pir||E75434_66:160 blasting: O84453/81-249 gi|7473679|pir||E75434_8:35 blasting: O84453/81-249 gi|6967533|emb|CAB72521.1|_98:203 blasting: O84453/81-249 gi|6967533|emb|CAB72521.1|_51:79 blasting: O84453/81-249 gi|7190761|gb|AAF39542.1|_133:249 blasting: O84453/81-249 gi|7190761|gb|AAF39542.1|_82:130 blasting: O84453/81-249 gi|7226077|gb|AAF41253.1|_129:235 blasting: O84453/81-249 gi|7226077|gb|AAF41253.1|_73:114 blasting: O84453/81-249 gi|7228156|emb|CAB77039.1|_120:235 blasting: O84453/81-249 gi|7228156|emb|CAB77039.1|_69:99 blasting: O84453/81-249 gi|7379749|emb|CAB84317.1|_129:235 blasting: O84453/81-249 gi|7379749|emb|CAB84317.1|_73:114 blasting: O84453/81-249 gi|7453624|gb|AAF62912.1|_129:235 blasting: O84453/81-249 gi|7453624|gb|AAF62912.1|_73:114 blasting: O84453/81-249 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: O84453/81-249 gi|9106065|gb|AAF83920.1|AE003946_11_45:77 blasting: O84453/81-249 gi|9656991|gb|AAF95560.1|_123:239 blasting: O84453/81-249 gi|9656991|gb|AAF95560.1|_71:101 blasting: starting O67909/73-229 with E=0.000050 O67909/73-229 O67909/73-229 blasting: O67909/73-229 gi|1172895|sp|P45112|RECJ_HAEIN_120:233 blasting: O67909/73-229 gi|1172895|sp|P45112|RECJ_HAEIN_67:114 blasting: O67909/73-229 gi|7470865|pir||S77224_148:243 blasting: O67909/73-229 gi|7470865|pir||S77224_80:108 blasting: O67909/73-229 gi|7475820|pir||H69980_76:126 blasting: O67909/73-229 gi|7475820|pir||H69980_132:232 blasting: O67909/73-229 gi|7451685|pir||A70485_123:229 blasting: O67909/73-229 gi|7451685|pir||A70485_73:122 blasting: O67909/73-229 gi|7462837|pir||F72243_124:229 blasting: O67909/73-229 gi|7462837|pir||F72243_75:121 blasting: O67909/73-229 gi|7473679|pir||E75434_3:53 blasting: O67909/73-229 gi|7473679|pir||E75434_123:162 blasting: O67909/73-229 gi|7473679|pir||E75434_65:96 blasting: O67909/73-229 gi|7226077|gb|AAF41253.1|_68:117 blasting: O67909/73-229 gi|7226077|gb|AAF41253.1|_120:237 blasting: O67909/73-229 gi|7453624|gb|AAF62912.1|_68:117 blasting: O67909/73-229 gi|7453624|gb|AAF62912.1|_120:237 blasting: O67909/73-229 gi|9656991|gb|AAF95560.1|_69:120 blasting: O67909/73-229 gi|9656991|gb|AAF95560.1|_129:241 blasting: starting P73518/80-246 with E=0.000050 P73518/80-246 P73518/80-246 blasting: P73518/80-246 gi|96357|pir||C39202_129:238 blasting: P73518/80-246 gi|96357|pir||C39202_68:119 blasting: P73518/80-246 gi|2507106|sp|P21893|RECJ_ECOLI_128:237 blasting: P73518/80-246 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: P73518/80-246 gi|1172895|sp|P45112|RECJ_HAEIN_124:231 blasting: P73518/80-246 gi|1172895|sp|P45112|RECJ_HAEIN_63:119 blasting: P73518/80-246 gi|2507107|sp|P39693|RECJ_ERWCH_127:236 blasting: P73518/80-246 gi|2507107|sp|P39693|RECJ_ERWCH_66:117 blasting: P73518/80-246 gi|7470865|pir||S77224_141:244 blasting: P73518/80-246 gi|7470865|pir||S77224_80:140 blasting: P73518/80-246 gi|7475820|pir||H69980_136:230 blasting: P73518/80-246 gi|7475820|pir||H69980_76:126 blasting: P73518/80-246 gi|7463775|pir||F70131_136:206 blasting: P73518/80-246 gi|7463775|pir||F70131_73:122 blasting: P73518/80-246 gi|7451685|pir||A70485_136:226 blasting: P73518/80-246 gi|7451685|pir||A70485_73:123 blasting: P73518/80-246 gi|3063673|gb|AAC14136.1|_75:175 blasting: P73518/80-246 gi|3063673|gb|AAC14136.1|_11:59 blasting: P73518/80-246 gi|7521421|pir||D71289_129:204 blasting: P73518/80-246 gi|7521421|pir||D71289_72:103 blasting: P73518/80-246 gi|7521421|pir||D71289_332:368 blasting: P73518/80-246 gi|7451688|pir||H71513_142:247 blasting: P73518/80-246 gi|7451688|pir||H71513_81:129 blasting: P73518/80-246 gi|7451686|pir||G71656_141:248 blasting: P73518/80-246 gi|7451686|pir||G71656_80:128 blasting: P73518/80-246 gi|4101624|gb|AAD01239.1|_136:206 blasting: P73518/80-246 gi|4101624|gb|AAD01239.1|_73:122 blasting: P73518/80-246 gi|4102237|gb|AAD09318.1|_136:206 blasting: P73518/80-246 gi|4102237|gb|AAD09318.1|_73:122 blasting: P73518/80-246 gi|7451687|pir||D72062_142:248 blasting: P73518/80-246 gi|7451687|pir||D72062_82:130 blasting: P73518/80-246 gi|7462837|pir||F72243_137:230 blasting: P73518/80-246 gi|7462837|pir||F72243_72:121 blasting: P73518/80-246 gi|7473679|pir||E75434_66:160 blasting: P73518/80-246 gi|7473679|pir||E75434_3:53 blasting: P73518/80-246 gi|6967533|emb|CAB72521.1|_108:203 blasting: P73518/80-246 gi|6967533|emb|CAB72521.1|_47:97 blasting: P73518/80-246 gi|7190761|gb|AAF39542.1|_142:247 blasting: P73518/80-246 gi|7190761|gb|AAF39542.1|_86:129 blasting: P73518/80-246 gi|7226077|gb|AAF41253.1|_126:235 blasting: P73518/80-246 gi|7226077|gb|AAF41253.1|_68:124 blasting: P73518/80-246 gi|7228156|emb|CAB77039.1|_132:235 blasting: P73518/80-246 gi|7228156|emb|CAB77039.1|_67:121 blasting: P73518/80-246 gi|7379749|emb|CAB84317.1|_126:235 blasting: P73518/80-246 gi|7379749|emb|CAB84317.1|_68:124 blasting: P73518/80-246 gi|7453624|gb|AAF62912.1|_126:235 blasting: P73518/80-246 gi|7453624|gb|AAF62912.1|_68:124 blasting: P73518/80-246 gi|9656991|gb|AAF95560.1|_130:239 blasting: P73518/80-246 gi|9656991|gb|AAF95560.1|_69:120 blasting: starting O83702/72-370 with E=0.000050 O83702/72-370 O83702/72-370 blasting: O83702/72-370 gi|7470865|pir||S77224_138:216 blasting: O83702/72-370 gi|7470865|pir||S77224_80:111 blasting: O83702/72-370 gi|7470865|pir||S77224_214:245 blasting: O83702/72-370 gi|7463775|pir||F70131_73:122 blasting: O83702/72-370 gi|7463775|pir||F70131_135:205 blasting: O83702/72-370 gi|7463775|pir||F70131_206:369 blasting: O83702/72-370 gi|7521421|pir||D71289_204:370 blasting: O83702/72-370 gi|7521421|pir||D71289_122:203 blasting: O83702/72-370 gi|7521421|pir||D71289_72:121 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_73:122 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_135:205 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_206:369 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_73:122 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_135:205 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_206:369 blasting: O83702/72-370 gi|7226077|gb|AAF41253.1|_126:200 blasting: O83702/72-370 gi|7226077|gb|AAF41253.1|_71:108 blasting: O83702/72-370 gi|7379749|emb|CAB84317.1|_126:200 blasting: O83702/72-370 gi|7379749|emb|CAB84317.1|_68:108 blasting: O83702/72-370 gi|7453624|gb|AAF62912.1|_126:200 blasting: O83702/72-370 gi|7453624|gb|AAF62912.1|_68:108 blasting: starting O31903/58-212 with E=0.000050 O31903/58-212 O31903/58-212 blasting: O31903/58-212 gi|7451688|pir||H71513_197:246 blasting: O31903/58-212 gi|7451688|pir||H71513_139:175 blasting: O31903/58-212 gi|7451688|pir||H71513_95:129 blasting: O31903/58-212 gi|7462837|pir||F72243_187:229 blasting: O31903/58-212 gi|7462837|pir||F72243_151:167 blasting: O31903/58-212 gi|7462837|pir||F72243_74:121 blasting: O31903/58-212 gi|7473679|pir||E75434_55:159 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_196:246 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_139:175 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_95:129 blasting: starting O25177/21-204 with E=0.000050 O25177/21-204 O25177/21-204 blasting: O25177/21-204 gi|7464253|pir||A64573_21:200 blasting: O25177/21-204 gi|7464533|pir||B64696_21:200 blasting: O25177/21-204 gi|7464994|pir||E71824_21:200 blasting: starting O66728/1-143 with E=0.000050 O66728/1-143 O66728/1-143 blasting: O66728/1-143 gi|7520820|pir||D70337_1:96 blasting: O66728/1-143 gi|7520820|pir||D70337_97:143 blasting: O66728/1-143 gi|7520820|pir||D70337_151:159 blasting: starting YYBT_BACSU/333-502 with E=0.000050 YYBT_BACSU/333-502 YYBT_BACSU/333-502 blasting: YYBT_BACSU/333-502 gi|586814|sp|P37484|YYBT_BACSU_334:500 blasting: starting Y371_MYCPN/15-167 with E=0.000050 Y371_MYCPN/15-167 Y371_MYCPN/15-167 blasting: Y371_MYCPN/15-167 gi|406933|gb|AAD12529.1|_5:51 blasting: Y371_MYCPN/15-167 gi|2496409|sp|Q49428|Y371_MYCGE_17:131 blasting: Y371_MYCPN/15-167 gi|2496409|sp|Q49428|Y371_MYCGE_121:167 blasting: Y371_MYCPN/15-167 gi|2496410|sp|P75229|Y371_MYCPN_17:131 blasting: Y371_MYCPN/15-167 gi|2496410|sp|P75229|Y371_MYCPN_120:167 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_66:133 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_12:52 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_138:159 blasting: Y371_MYCPN/15-167 gi|6899406|gb|AAF30828.1|AE002139_1_16:141 blasting: starting O34600/8-159 with E=0.000050 O34600/8-159 O34600/8-159 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_59:107 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_150:160 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_189:209 blasting: O34600/8-159 gi|2496409|sp|Q49428|Y371_MYCGE_76:144 blasting: O34600/8-159 gi|2496409|sp|Q49428|Y371_MYCGE_19:59 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_21:69 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_77:124 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_153:173 blasting: O34600/8-159 gi|2496410|sp|P75229|Y371_MYCPN_77:144 blasting: O34600/8-159 gi|2496410|sp|P75229|Y371_MYCPN_19:59 blasting: O34600/8-159 gi|7430136|pir||F69999_61:159 blasting: O34600/8-159 gi|7430136|pir||F69999_10:60 blasting: starting MGPA_MYCGE/55-209 with E=0.000050 MGPA_MYCGE/55-209 MGPA_MYCGE/55-209 blasting: MGPA_MYCGE/55-209 gi|80890|pir||JQ0091_4:78 blasting: MGPA_MYCGE/55-209 gi|80890|pir||JQ0091_53:100 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_1:65 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_42:89 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_2:19 blasting: MGPA_MYCGE/55-209 gi|1346531|sp|P22746|MGPA_MYCGE_55:186 blasting: MGPA_MYCGE/55-209 gi|1346531|sp|P22746|MGPA_MYCGE_161:208 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_77:119 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_16:59 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_154:165 blasting: MGPA_MYCGE/55-209 gi|2498554|sp|P75144|MGPA_MYCPN_17:148 blasting: MGPA_MYCGE/55-209 gi|2498554|sp|P75144|MGPA_MYCPN_125:172 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_9:51 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_64:108 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_139:157 blasting: MGPA_MYCGE/55-209 gi|6899406|gb|AAF30828.1|AE002139_1_16:113 blasting: MGPA_MYCGE/55-209 gi|6899406|gb|AAF30828.1|AE002139_1_155:164 blasting: starting MGPA_MYCPN/17-173 with E=0.000050 MGPA_MYCPN/17-173 MGPA_MYCPN/17-173 blasting: MGPA_MYCPN/17-173 gi|80890|pir||JQ0091_13:76 blasting: MGPA_MYCPN/17-173 gi|80890|pir||JQ0091_53:100 blasting: MGPA_MYCPN/17-173 gi|80899|pir||JS0068_2:67 blasting: MGPA_MYCPN/17-173 gi|80899|pir||JS0068_42:89 blasting: MGPA_MYCPN/17-173 gi|1346531|sp|P22746|MGPA_MYCGE_55:184 blasting: MGPA_MYCPN/17-173 gi|1346531|sp|P22746|MGPA_MYCGE_161:208 blasting: MGPA_MYCPN/17-173 gi|2498554|sp|P75144|MGPA_MYCPN_17:150 blasting: MGPA_MYCPN/17-173 gi|2498554|sp|P75144|MGPA_MYCPN_125:172 blasting: MGPA_MYCPN/17-173 gi|7430136|pir||F69999_9:108 blasting: MGPA_MYCPN/17-173 gi|7430136|pir||F69999_139:157 blasting: starting O67552/12-160 with E=0.000050 O67552/12-160 O67552/12-160 blasting: O67552/12-160 gi|7477397|pir||H70693_129:183 blasting: O67552/12-160 gi|7477397|pir||H70693_38:68 blasting: O67552/12-160 gi|7445472|pir||F70440_14:111 blasting: O67552/12-160 gi|7445472|pir||F70440_112:159 blasting: O67552/12-160 gi|7471305|pir||A75470_27:72 blasting: O67552/12-160 gi|7471305|pir||A75470_160:173 blasting: starting O51564/17-170 with E=0.000050 O51564/17-170 O51564/17-170 blasting: O51564/17-170 gi|7430137|pir||B70177_17:134 blasting: O51564/17-170 gi|7430137|pir||B70177_123:169 blasting: O51564/17-170 gi|7514584|pir||D71323_37:90 blasting: O51564/17-170 gi|7514584|pir||D71323_110:140 blasting: O51564/17-170 gi|7514584|pir||D71323_174:191 blasting: O51564/17-170 gi|7514584|pir||D71323_157:167 blasting: starting O83450/37-192 with E=0.000050 O83450/37-192 O83450/37-192 blasting: O83450/37-192 gi|7430137|pir||B70177_18:118 blasting: O83450/37-192 gi|7430137|pir||B70177_135:169 blasting: O83450/37-192 gi|7514584|pir||D71323_38:156 blasting: O83450/37-192 gi|7514584|pir||D71323_145:191 blasting: O83450/37-192 gi|7462295|pir||G72233_8:45 blasting: O83450/37-192 gi|7462295|pir||G72233_72:107 blasting: O83450/37-192 gi|7462295|pir||G72233_148:156 blasting: starting P71615/29-184 with E=0.000050 P71615/29-184 P71615/29-184 blasting: P71615/29-184 gi|7477397|pir||H70693_29:148 blasting: P71615/29-184 gi|7477397|pir||H70693_137:183 blasting: P71615/29-184 gi|7462295|pir||G72233_72:120 blasting: P71615/29-184 gi|7462295|pir||G72233_13:60 blasting: P71615/29-184 gi|7462295|pir||G72233_136:156 blasting: starting P72962/61-231 with E=0.000050 P72962/61-231 P72962/61-231 blasting: P72962/61-231 gi|3025197|sp|Q59027|YG33_METJA_167:274 blasting: P72962/61-231 gi|3025197|sp|Q59027|YG33_METJA_269:310 blasting: P72962/61-231 gi|7469901|pir||S74940_61:230 blasting: P72962/61-231 gi|7448978|pir||D69503_155:267 blasting: P72962/61-231 gi|7448980|pir||H71452_164:297 blasting: P72962/61-231 gi|7448979|pir||B75216_164:297 blasting: starting YG33_METJA/160-312 with E=0.000050 YG33_METJA/160-312 YG33_METJA/160-312 blasting: YG33_METJA/160-312 gi|3025197|sp|Q59027|YG33_METJA_162:276 blasting: YG33_METJA/160-312 gi|3025197|sp|Q59027|YG33_METJA_265:312 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_67:200 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_218:229 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_312:324 blasting: YG33_METJA/160-312 gi|7448978|pir||D69503_161:270 blasting: YG33_METJA/160-312 gi|7448978|pir||D69503_259:304 blasting: YG33_METJA/160-312 gi|7448980|pir||H71452_159:263 blasting: YG33_METJA/160-312 gi|7448980|pir||H71452_278:319 blasting: YG33_METJA/160-312 gi|7448979|pir||B75216_159:263 blasting: YG33_METJA/160-312 gi|7448979|pir||B75216_278:319 blasting: starting O28250/152-306 with E=0.000050 O28250/152-306 O28250/152-306 blasting: O28250/152-306 gi|3025197|sp|Q59027|YG33_METJA_169:260 blasting: O28250/152-306 gi|3025197|sp|Q59027|YG33_METJA_265:308 blasting: O28250/152-306 gi|7469901|pir||S74940_63:201 blasting: O28250/152-306 gi|7448978|pir||D69503_153:270 blasting: O28250/152-306 gi|7448978|pir||D69503_259:306 blasting: O28250/152-306 gi|7448980|pir||H71452_166:297 blasting: O28250/152-306 gi|7448979|pir||B75216_160:297 blasting: starting O58017/157-321 with E=0.000050 O58017/157-321 O58017/157-321 blasting: O58017/157-321 gi|3025197|sp|Q59027|YG33_METJA_161:260 blasting: O58017/157-321 gi|3025197|sp|Q59027|YG33_METJA_269:310 blasting: O58017/157-321 gi|7469901|pir||S74940_67:201 blasting: O58017/157-321 gi|7469901|pir||S74940_218:229 blasting: O58017/157-321 gi|7448978|pir||D69503_161:270 blasting: O58017/157-321 gi|7448978|pir||D69503_263:304 blasting: O58017/157-321 gi|7448980|pir||H71452_158:298 blasting: O58017/157-321 gi|7448980|pir||H71452_224:319 blasting: O58017/157-321 gi|7448979|pir||B75216_158:298 blasting: O58017/157-321 gi|7448979|pir||B75216_224:319 blasting: starting O73979/14-165 with E=0.000050 O73979/14-165 O73979/14-165 blasting: O73979/14-165 gi|3024962|sp|Q58395|Y988_METJA_9:107 blasting: O73979/14-165 gi|3024962|sp|Q58395|Y988_METJA_127:159 blasting: O73979/14-165 gi|7518694|pir||B71167_15:130 blasting: O73979/14-165 gi|7518694|pir||B71167_117:164 blasting: O73979/14-165 gi|7518105|pir||C75065_16:131 blasting: O73979/14-165 gi|7518105|pir||C75065_118:165 blasting: starting Y988_METJA/5-161 with E=0.000050 Y988_METJA/5-161 Y988_METJA/5-161 blasting: Y988_METJA/5-161 gi|3024962|sp|Q58395|Y988_METJA_6:138 blasting: Y988_METJA/5-161 gi|3024962|sp|Q58395|Y988_METJA_112:161 blasting: Y988_METJA/5-161 gi|7518694|pir||B71167_14:112 blasting: Y988_METJA/5-161 gi|7518694|pir||B71167_132:163 blasting: Y988_METJA/5-161 gi|7518105|pir||C75065_14:113 blasting: Y988_METJA/5-161 gi|7518105|pir||C75065_133:144 blasting: starting O83781/33-211 with E=0.000050 O83781/33-211 O83781/33-211 blasting: O83781/33-211 gi|7519590|pir||E71279_33:211 blasting: starting O25683/3-150 with E=0.000050 O25683/3-150 O25683/3-150 blasting: O25683/3-150 gi|2125805|emb|CAA70008.1|_4:58 blasting: O25683/3-150 gi|7464457|pir||B64650_11:131 blasting: O25683/3-150 gi|7464457|pir||B64650_4:49 blasting: O25683/3-150 gi|7464457|pir||B64650_132:150 blasting: O25683/3-150 gi|7464707|pir||D71937_10:130 blasting: O25683/3-150 gi|7464707|pir||D71937_3:48 blasting: O25683/3-150 gi|7464707|pir||D71937_131:149 blasting: O25683/3-150 gi|4680599|gb|AAD27690.1|AF125197_5_3:55 blasting: O25683/3-150 gi|6968320|emb|CAB73140.1|_59:123 blasting: O25683/3-150 gi|6968320|emb|CAB73140.1|_3:46 blasting: starting O31824/1-143 with E=0.000050 O31824/1-143 O31824/1-143 blasting: O31824/1-143 gi|7475203|pir||A69893_9:126 blasting: O31824/1-143 gi|7475203|pir||A69893_127:143 blasting: starting Q58598/358-537 with E=0.000050 Q58598/358-537 Q58598/358-537 blasting: Q58598/358-537 gi|2128720|pir||E64449_358:537 blasting: Q58598/358-537 gi|7450088|pir||A69202_343:519 blasting: Q58598/358-537 gi|7450090|pir||H69416_329:477 blasting: Q58598/358-537 gi|7450090|pir||H69416_447:496 blasting: Q58598/358-537 gi|7450090|pir||H69416_317:354 blasting: Q58598/358-537 gi|7450089|pir||A71141_350:528 blasting: Q58598/358-537 gi|7450091|pir||A75011_350:528 blasting: starting O26857/343-522 with E=0.000050 O26857/343-522 O26857/343-522 blasting: O26857/343-522 gi|2128720|pir||E64449_358:534 blasting: O26857/343-522 gi|7450088|pir||A69202_343:522 blasting: O26857/343-522 gi|7450090|pir||H69416_329:477 blasting: O26857/343-522 gi|7450089|pir||A71141_350:528 blasting: O26857/343-522 gi|7450091|pir||A75011_350:528 blasting: starting O58078/350-531 with E=0.000050 O58078/350-531 O58078/350-531 blasting: O58078/350-531 gi|2128720|pir||E64449_358:530 blasting: O58078/350-531 gi|7450088|pir||A69202_343:515 blasting: O58078/350-531 gi|7450090|pir||H69416_329:481 blasting: O58078/350-531 gi|7450089|pir||A71141_350:531 blasting: O58078/350-531 gi|7450091|pir||A75011_350:531 blasting: starting O28932/329-499 with E=0.000050 O28932/329-499 O28932/329-499 blasting: O28932/329-499 gi|2128720|pir||E64449_358:534 blasting: O28932/329-499 gi|7450088|pir||A69202_343:497 blasting: O28932/329-499 gi|7450090|pir||H69416_329:496 blasting: O28932/329-499 gi|7450089|pir||A71141_350:506 blasting: O28932/329-499 gi|7450089|pir||A71141_517:528 blasting: O28932/329-499 gi|7450091|pir||A75011_350:528 blasting: starting O30161/24-173 with E=0.000050 O30161/24-173 O30161/24-173 blasting: O30161/24-173 gi|7482966|pir||C69259_67:173 blasting: O30161/24-173 gi|7482966|pir||C69259_26:66 blasting: starting Y831_METJA/19-168 with E=0.000050 Y831_METJA/19-168 Y831_METJA/19-168 blasting: Y831_METJA/19-168 gi|2833617|sp|Q58241|Y831_METJA_77:167 blasting: Y831_METJA/19-168 gi|2833617|sp|Q58241|Y831_METJA_20:76 blasting: Y831_METJA/19-168 gi|7450700|pir||B69086_55:145 blasting: Y831_METJA/19-168 gi|7450700|pir||B69086_8:31 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_89:173 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_38:85 blasting: Y831_METJA/19-168 gi|7450701|pir||E69056_259:272 blasting: Y831_METJA/19-168 gi|7450702|pir||C69337_74:161 blasting: Y831_METJA/19-168 gi|7450702|pir||C69337_24:65 blasting: Y831_METJA/19-168 gi|7450704|pir||H71224_81:170 blasting: Y831_METJA/19-168 gi|7450704|pir||H71224_30:77 blasting: Y831_METJA/19-168 gi|7450703|pir||G75192_82:171 blasting: Y831_METJA/19-168 gi|7450703|pir||G75192_31:79 blasting: starting O27473/31-174 with E=0.000050 O27473/31-174 O27473/31-174 blasting: O27473/31-174 gi|2833617|sp|Q58241|Y831_METJA_67:167 blasting: O27473/31-174 gi|2833617|sp|Q58241|Y831_METJA_26:65 blasting: O27473/31-174 gi|7450701|pir||E69056_79:173 blasting: O27473/31-174 gi|7450701|pir||E69056_31:78 blasting: O27473/31-174 gi|7450702|pir||C69337_70:161 blasting: O27473/31-174 gi|7450702|pir||C69337_23:67 blasting: O27473/31-174 gi|7450704|pir||H71224_23:69 blasting: O27473/31-174 gi|7450704|pir||H71224_71:170 blasting: O27473/31-174 gi|7450704|pir||H71224_273:285 blasting: O27473/31-174 gi|7450703|pir||G75192_24:70 blasting: O27473/31-174 gi|7450703|pir||G75192_72:171 blasting: O27473/31-174 gi|7450703|pir||G75192_274:286 blasting: starting O57804/23-171 with E=0.000050 O57804/23-171 O57804/23-171 blasting: O57804/23-171 gi|2833617|sp|Q58241|Y831_METJA_62:167 blasting: O57804/23-171 gi|2833617|sp|Q58241|Y831_METJA_26:60 blasting: O57804/23-171 gi|2842584|sp|Q58387|RECJ_METJA_58:168 blasting: O57804/23-171 gi|2842584|sp|Q58387|RECJ_METJA_22:57 blasting: O57804/23-171 gi|7450700|pir||B69086_55:145 blasting: O57804/23-171 gi|7450700|pir||B69086_2:41 blasting: O57804/23-171 gi|7450701|pir||E69056_31:73 blasting: O57804/23-171 gi|7450701|pir||E69056_74:170 blasting: O57804/23-171 gi|7450701|pir||E69056_110:173 blasting: O57804/23-171 gi|7450702|pir||C69337_70:161 blasting: O57804/23-171 gi|7450702|pir||C69337_27:61 blasting: O57804/23-171 gi|7450704|pir||H71224_66:170 blasting: O57804/23-171 gi|7450704|pir||H71224_23:65 blasting: O57804/23-171 gi|7450703|pir||G75192_67:171 blasting: O57804/23-171 gi|7450703|pir||G75192_24:66 blasting: starting O29559/20-162 with E=0.000050 O29559/20-162 O29559/20-162 blasting: O29559/20-162 gi|2833617|sp|Q58241|Y831_METJA_80:167 blasting: O29559/20-162 gi|2833617|sp|Q58241|Y831_METJA_23:64 blasting: O29559/20-162 gi|2842584|sp|Q58387|RECJ_METJA_72:168 blasting: O29559/20-162 gi|2842584|sp|Q58387|RECJ_METJA_18:56 blasting: O29559/20-162 gi|7450701|pir||E69056_89:173 blasting: O29559/20-162 gi|7450701|pir||E69056_34:78 blasting: O29559/20-162 gi|7450702|pir||C69337_71:162 blasting: O29559/20-162 gi|7450702|pir||C69337_21:70 blasting: O29559/20-162 gi|7450704|pir||H71224_80:170 blasting: O29559/20-162 gi|7450704|pir||H71224_30:68 blasting: O29559/20-162 gi|7450703|pir||G75192_81:171 blasting: O29559/20-162 gi|7450703|pir||G75192_31:69 blasting: starting O29523/14-162 with E=0.000050 O29523/14-162 O29523/14-162 blasting: O29523/14-162 gi|7450705|pir||G69341_80:161 blasting: O29523/14-162 gi|7450705|pir||G69341_15:67 blasting: O29523/14-162 gi|7450705|pir||G69341_68:116 blasting: starting Y977_METJA/15-169 with E=0.000050 Y977_METJA/15-169 Y977_METJA/15-169 blasting: Y977_METJA/15-169 gi|2842584|sp|Q58387|RECJ_METJA_58:169 blasting: Y977_METJA/15-169 gi|2842584|sp|Q58387|RECJ_METJA_17:57 blasting: Y977_METJA/15-169 gi|7450700|pir||B69086_38:146 blasting: Y977_METJA/15-169 gi|7450700|pir||B69086_8:35 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_66:151 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_98:170 blasting: Y977_METJA/15-169 gi|7450704|pir||H71224_30:65 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_67:152 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_101:171 blasting: Y977_METJA/15-169 gi|7450703|pir||G75192_31:66 blasting: starting O26266/1-146 with E=0.000050 O26266/1-146 O26266/1-146 blasting: O26266/1-146 gi|2833617|sp|Q58241|Y831_METJA_80:167 blasting: O26266/1-146 gi|2833617|sp|Q58241|Y831_METJA_26:49 blasting: O26266/1-146 gi|2842584|sp|Q58387|RECJ_METJA_72:169 blasting: O26266/1-146 gi|2842584|sp|Q58387|RECJ_METJA_22:67 blasting: O26266/1-146 gi|7450700|pir||B69086_52:146 blasting: O26266/1-146 gi|7450700|pir||B69086_2:51 blasting: O26266/1-146 gi|7450702|pir||C69337_73:161 blasting: O26266/1-146 gi|7450702|pir||C69337_21:70 blasting: O26266/1-146 gi|7450704|pir||H71224_81:170 blasting: O26266/1-146 gi|7450704|pir||H71224_24:63 blasting: O26266/1-146 gi|7450703|pir||G75192_84:171 blasting: O26266/1-146 gi|7450703|pir||G75192_25:64 blasting: starting O29950/1-131 with E=0.000050 O29950/1-131 O29950/1-131 blasting: O29950/1-131 gi|7483398|pir||C69286_41:116 blasting: O29950/1-131 gi|7483398|pir||C69286_1:40 blasting: O29950/1-131 gi|7483398|pir||C69286_117:130 blasting: O29950/1-131 gi|7518174|pir||C75097_37:111 blasting: O29950/1-131 gi|7518174|pir||C75097_3:36 blasting: O29950/1-131 gi|7518174|pir||C75097_113:126 blasting: O29950/1-131 gi|7518174|pir||C75097_162:173 blasting: starting O25115/42-203 with E=0.000050 O25115/42-203 O25115/42-203 blasting: O25115/42-203 gi|96357|pir||C39202_131:240 blasting: O25115/42-203 gi|96357|pir||C39202_70:125 blasting: O25115/42-203 gi|2507106|sp|P21893|RECJ_ECOLI_130:239 blasting: O25115/42-203 gi|2507106|sp|P21893|RECJ_ECOLI_69:124 blasting: O25115/42-203 gi|1172895|sp|P45112|RECJ_HAEIN_128:233 blasting: O25115/42-203 gi|1172895|sp|P45112|RECJ_HAEIN_69:114 blasting: O25115/42-203 gi|2507107|sp|P39693|RECJ_ERWCH_129:238 blasting: O25115/42-203 gi|2507107|sp|P39693|RECJ_ERWCH_70:117 blasting: O25115/42-203 gi|7451683|pir||D64563_101:203 blasting: O25115/42-203 gi|7451683|pir||D64563_43:100 blasting: O25115/42-203 gi|7475820|pir||H69980_140:232 blasting: O25115/42-203 gi|7475820|pir||H69980_82:124 blasting: O25115/42-203 gi|3063673|gb|AAC14136.1|_75:175 blasting: O25115/42-203 gi|3063673|gb|AAC14136.1|_15:67 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_136:206 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_74:126 blasting: O25115/42-203 gi|4101624|gb|AAD01239.1|_357:370 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_136:206 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_74:126 blasting: O25115/42-203 gi|4102237|gb|AAD09318.1|_357:370 blasting: O25115/42-203 gi|7451682|pir||B71946_101:203 blasting: O25115/42-203 gi|7451682|pir||B71946_43:100 blasting: O25115/42-203 gi|7462837|pir||F72243_137:231 blasting: O25115/42-203 gi|7462837|pir||F72243_76:121 blasting: O25115/42-203 gi|7473679|pir||E75434_64:162 blasting: O25115/42-203 gi|7473679|pir||E75434_4:60 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_108:204 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_51:103 blasting: O25115/42-203 gi|6967533|emb|CAB72521.1|_455:469 blasting: O25115/42-203 gi|7226077|gb|AAF41253.1|_132:237 blasting: O25115/42-203 gi|7226077|gb|AAF41253.1|_74:123 blasting: O25115/42-203 gi|7228156|emb|CAB77039.1|_132:237 blasting: O25115/42-203 gi|7228156|emb|CAB77039.1|_74:124 blasting: O25115/42-203 gi|7379749|emb|CAB84317.1|_132:236 blasting: O25115/42-203 gi|7379749|emb|CAB84317.1|_74:123 blasting: O25115/42-203 gi|7453624|gb|AAF62912.1|_132:237 blasting: O25115/42-203 gi|7453624|gb|AAF62912.1|_74:123 blasting: O25115/42-203 gi|9106065|gb|AAF83920.1|AE003946_11_44:100 blasting: O25115/42-203 gi|9106065|gb|AAF83920.1|AE003946_11_108:226 blasting: O25115/42-203 gi|9656991|gb|AAF95560.1|_132:241 blasting: O25115/42-203 gi|9656991|gb|AAF95560.1|_76:126 blasting: starting Q9ZD22/80-250 with E=0.000050 Q9ZD22/80-250 Q9ZD22/80-250 blasting: Q9ZD22/80-250 gi|96357|pir||C39202_120:239 blasting: Q9ZD22/80-250 gi|96357|pir||C39202_74:117 blasting: Q9ZD22/80-250 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: Q9ZD22/80-250 gi|2507106|sp|P21893|RECJ_ECOLI_73:116 blasting: Q9ZD22/80-250 gi|1172895|sp|P45112|RECJ_HAEIN_116:232 blasting: Q9ZD22/80-250 gi|1172895|sp|P45112|RECJ_HAEIN_68:112 blasting: Q9ZD22/80-250 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: Q9ZD22/80-250 gi|2507107|sp|P39693|RECJ_ERWCH_66:115 blasting: Q9ZD22/80-250 gi|7470865|pir||S77224_137:245 blasting: Q9ZD22/80-250 gi|7470865|pir||S77224_80:131 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_129:214 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_76:125 blasting: Q9ZD22/80-250 gi|7475820|pir||H69980_191:231 blasting: Q9ZD22/80-250 gi|3063673|gb|AAC14136.1|_67:175 blasting: Q9ZD22/80-250 gi|3063673|gb|AAC14136.1|_15:44 blasting: Q9ZD22/80-250 gi|7451688|pir||H71513_141:247 blasting: Q9ZD22/80-250 gi|7451688|pir||H71513_81:131 blasting: Q9ZD22/80-250 gi|7451686|pir||G71656_131:249 blasting: Q9ZD22/80-250 gi|7451686|pir||G71656_80:130 blasting: Q9ZD22/80-250 gi|7451687|pir||D72062_138:248 blasting: Q9ZD22/80-250 gi|7451687|pir||D72062_87:132 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_123:206 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_76:120 blasting: Q9ZD22/80-250 gi|7462837|pir||F72243_172:231 blasting: Q9ZD22/80-250 gi|6967533|emb|CAB72521.1|_108:155 blasting: Q9ZD22/80-250 gi|6967533|emb|CAB72521.1|_47:95 blasting: Q9ZD22/80-250 gi|7190761|gb|AAF39542.1|_141:247 blasting: Q9ZD22/80-250 gi|7190761|gb|AAF39542.1|_84:129 blasting: Q9ZD22/80-250 gi|7226077|gb|AAF41253.1|_129:236 blasting: Q9ZD22/80-250 gi|7226077|gb|AAF41253.1|_68:118 blasting: Q9ZD22/80-250 gi|7228156|emb|CAB77039.1|_119:236 blasting: Q9ZD22/80-250 gi|7228156|emb|CAB77039.1|_67:116 blasting: Q9ZD22/80-250 gi|7379749|emb|CAB84317.1|_129:236 blasting: Q9ZD22/80-250 gi|7379749|emb|CAB84317.1|_68:118 blasting: Q9ZD22/80-250 gi|7453624|gb|AAF62912.1|_129:236 blasting: Q9ZD22/80-250 gi|7453624|gb|AAF62912.1|_68:118 blasting: Q9ZD22/80-250 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: Q9ZD22/80-250 gi|9106065|gb|AAF83920.1|AE003946_11_49:92 blasting: Q9ZD22/80-250 gi|9656991|gb|AAF95560.1|_131:240 blasting: Q9ZD22/80-250 gi|9656991|gb|AAF95560.1|_69:118 blasting: starting O32044/76-232 with E=0.000050 O32044/76-232 O32044/76-232 blasting: O32044/76-232 gi|96357|pir||C39202_129:239 blasting: O32044/76-232 gi|96357|pir||C39202_68:117 blasting: O32044/76-232 gi|2507106|sp|P21893|RECJ_ECOLI_128:238 blasting: O32044/76-232 gi|2507106|sp|P21893|RECJ_ECOLI_67:116 blasting: O32044/76-232 gi|1172895|sp|P45112|RECJ_HAEIN_123:232 blasting: O32044/76-232 gi|1172895|sp|P45112|RECJ_HAEIN_63:112 blasting: O32044/76-232 gi|2507107|sp|P39693|RECJ_ERWCH_127:237 blasting: O32044/76-232 gi|2507107|sp|P39693|RECJ_ERWCH_66:115 blasting: O32044/76-232 gi|7470865|pir||S77224_143:245 blasting: O32044/76-232 gi|7470865|pir||S77224_80:133 blasting: O32044/76-232 gi|7451683|pir||D64563_104:202 blasting: O32044/76-232 gi|7451683|pir||D64563_42:91 blasting: O32044/76-232 gi|7475820|pir||H69980_127:231 blasting: O32044/76-232 gi|7475820|pir||H69980_76:126 blasting: O32044/76-232 gi|7463775|pir||F70131_131:169 blasting: O32044/76-232 gi|7463775|pir||F70131_73:120 blasting: O32044/76-232 gi|7463775|pir||F70131_188:206 blasting: O32044/76-232 gi|7463775|pir||F70131_357:367 blasting: O32044/76-232 gi|7451685|pir||A70485_73:122 blasting: O32044/76-232 gi|7451685|pir||A70485_127:226 blasting: O32044/76-232 gi|3063673|gb|AAC14136.1|_68:175 blasting: O32044/76-232 gi|3063673|gb|AAC14136.1|_11:59 blasting: O32044/76-232 gi|7521421|pir||D71289_132:204 blasting: O32044/76-232 gi|7521421|pir||D71289_72:119 blasting: O32044/76-232 gi|7521421|pir||D71289_357:369 blasting: O32044/76-232 gi|7451688|pir||H71513_142:247 blasting: O32044/76-232 gi|7451688|pir||H71513_81:118 blasting: O32044/76-232 gi|7451686|pir||G71656_133:218 blasting: O32044/76-232 gi|7451686|pir||G71656_80:129 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_131:169 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_73:120 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_188:206 blasting: O32044/76-232 gi|4101624|gb|AAD01239.1|_357:367 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_131:169 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_73:120 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_188:206 blasting: O32044/76-232 gi|4102237|gb|AAD09318.1|_357:367 blasting: O32044/76-232 gi|7451682|pir||B71946_104:202 blasting: O32044/76-232 gi|7451682|pir||B71946_42:91 blasting: O32044/76-232 gi|7451687|pir||D72062_139:248 blasting: O32044/76-232 gi|7451687|pir||D72062_82:120 blasting: O32044/76-232 gi|7462837|pir||F72243_128:231 blasting: O32044/76-232 gi|7462837|pir||F72243_72:120 blasting: O32044/76-232 gi|7473679|pir||E75434_66:160 blasting: O32044/76-232 gi|7473679|pir||E75434_3:51 blasting: O32044/76-232 gi|6967533|emb|CAB72521.1|_101:204 blasting: O32044/76-232 gi|6967533|emb|CAB72521.1|_47:97 blasting: O32044/76-232 gi|7190761|gb|AAF39542.1|_142:247 blasting: O32044/76-232 gi|7190761|gb|AAF39542.1|_86:118 blasting: O32044/76-232 gi|7226077|gb|AAF41253.1|_128:236 blasting: O32044/76-232 gi|7226077|gb|AAF41253.1|_68:116 blasting: O32044/76-232 gi|7228156|emb|CAB77039.1|_132:236 blasting: O32044/76-232 gi|7228156|emb|CAB77039.1|_67:116 blasting: O32044/76-232 gi|7379749|emb|CAB84317.1|_128:236 blasting: O32044/76-232 gi|7379749|emb|CAB84317.1|_68:116 blasting: O32044/76-232 gi|7453624|gb|AAF62912.1|_128:236 blasting: O32044/76-232 gi|7453624|gb|AAF62912.1|_68:116 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_107:182 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_44:92 blasting: O32044/76-232 gi|9106065|gb|AAF83920.1|AE003946_11_212:225 blasting: O32044/76-232 gi|9656991|gb|AAF95560.1|_129:240 blasting: O32044/76-232 gi|9656991|gb|AAF95560.1|_69:118 blasting: starting RECJ_ECOLI/67-239 with E=0.000050 RECJ_ECOLI/67-239 RECJ_ECOLI/67-239 blasting: RECJ_ECOLI/67-239 gi|96357|pir||C39202_120:239 blasting: RECJ_ECOLI/67-239 gi|96357|pir||C39202_69:119 blasting: RECJ_ECOLI/67-239 gi|625706|pir||S44445_68:96 blasting: RECJ_ECOLI/67-239 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: RECJ_ECOLI/67-239 gi|2507106|sp|P21893|RECJ_ECOLI_68:118 blasting: RECJ_ECOLI/67-239 gi|1172895|sp|P45112|RECJ_HAEIN_117:232 blasting: RECJ_ECOLI/67-239 gi|1172895|sp|P45112|RECJ_HAEIN_69:114 blasting: RECJ_ECOLI/67-239 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: RECJ_ECOLI/67-239 gi|2507107|sp|P39693|RECJ_ERWCH_69:117 blasting: RECJ_ECOLI/67-239 gi|7470865|pir||S77224_137:245 blasting: RECJ_ECOLI/67-239 gi|7470865|pir||S77224_86:133 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_102:204 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_44:93 blasting: RECJ_ECOLI/67-239 gi|7451683|pir||D64563_141:202 blasting: RECJ_ECOLI/67-239 gi|7475820|pir||H69980_136:231 blasting: RECJ_ECOLI/67-239 gi|7475820|pir||H69980_82:124 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_124:212 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_75:122 blasting: RECJ_ECOLI/67-239 gi|7463775|pir||F70131_343:367 blasting: RECJ_ECOLI/67-239 gi|3063673|gb|AAC14136.1|_75:175 blasting: RECJ_ECOLI/67-239 gi|3063673|gb|AAC14136.1|_18:42 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_125:218 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_78:121 blasting: RECJ_ECOLI/67-239 gi|7521421|pir||D71289_354:369 blasting: RECJ_ECOLI/67-239 gi|7451688|pir||H71513_134:247 blasting: RECJ_ECOLI/67-239 gi|7451688|pir||H71513_88:113 blasting: RECJ_ECOLI/67-239 gi|7451686|pir||G71656_131:249 blasting: RECJ_ECOLI/67-239 gi|7451686|pir||G71656_86:128 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_124:212 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_75:122 blasting: RECJ_ECOLI/67-239 gi|4101624|gb|AAD01239.1|_343:367 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_124:212 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_75:122 blasting: RECJ_ECOLI/67-239 gi|4102237|gb|AAD09318.1|_343:367 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_102:204 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_44:93 blasting: RECJ_ECOLI/67-239 gi|7451682|pir||B71946_141:202 blasting: RECJ_ECOLI/67-239 gi|7451687|pir||D72062_143:248 blasting: RECJ_ECOLI/67-239 gi|7451687|pir||D72062_89:113 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_123:233 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_172:231 blasting: RECJ_ECOLI/67-239 gi|7462837|pir||F72243_79:121 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_5:52 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_54:136 blasting: RECJ_ECOLI/67-239 gi|7473679|pir||E75434_122:160 blasting: RECJ_ECOLI/67-239 gi|6967533|emb|CAB72521.1|_108:204 blasting: RECJ_ECOLI/67-239 gi|6967533|emb|CAB72521.1|_53:97 blasting: RECJ_ECOLI/67-239 gi|7190761|gb|AAF39542.1|_134:247 blasting: RECJ_ECOLI/67-239 gi|7190761|gb|AAF39542.1|_88:113 blasting: RECJ_ECOLI/67-239 gi|7226077|gb|AAF41253.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7226077|gb|AAF41253.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|7228156|emb|CAB77039.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7228156|emb|CAB77039.1|_73:118 blasting: RECJ_ECOLI/67-239 gi|7379749|emb|CAB84317.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7379749|emb|CAB84317.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|7453624|gb|AAF62912.1|_119:236 blasting: RECJ_ECOLI/67-239 gi|7453624|gb|AAF62912.1|_74:118 blasting: RECJ_ECOLI/67-239 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: RECJ_ECOLI/67-239 gi|9106065|gb|AAF83920.1|AE003946_11_49:94 blasting: RECJ_ECOLI/67-239 gi|9656991|gb|AAF95560.1|_121:240 blasting: RECJ_ECOLI/67-239 gi|9656991|gb|AAF95560.1|_72:120 blasting: starting RECJ_ERWCH/66-238 with E=0.000050 RECJ_ERWCH/66-238 RECJ_ERWCH/66-238 blasting: RECJ_ERWCH/66-238 gi|96357|pir||C39202_120:239 blasting: RECJ_ERWCH/66-238 gi|96357|pir||C39202_68:119 blasting: RECJ_ERWCH/66-238 gi|625706|pir||S44445_65:98 blasting: RECJ_ERWCH/66-238 gi|2507106|sp|P21893|RECJ_ECOLI_119:238 blasting: RECJ_ERWCH/66-238 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: RECJ_ERWCH/66-238 gi|1172895|sp|P45112|RECJ_HAEIN_117:232 blasting: RECJ_ERWCH/66-238 gi|1172895|sp|P45112|RECJ_HAEIN_63:114 blasting: RECJ_ERWCH/66-238 gi|2507107|sp|P39693|RECJ_ERWCH_118:237 blasting: RECJ_ERWCH/66-238 gi|2507107|sp|P39693|RECJ_ERWCH_66:117 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_164:245 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_143:217 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_80:133 blasting: RECJ_ERWCH/66-238 gi|7470865|pir||S77224_236:261 blasting: RECJ_ERWCH/66-238 gi|7451683|pir||D64563_102:202 blasting: RECJ_ERWCH/66-238 gi|7451683|pir||D64563_42:93 blasting: RECJ_ERWCH/66-238 gi|7475820|pir||H69980_136:231 blasting: RECJ_ERWCH/66-238 gi|7475820|pir||H69980_76:124 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_124:206 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_73:122 blasting: RECJ_ERWCH/66-238 gi|7463775|pir||F70131_357:367 blasting: RECJ_ERWCH/66-238 gi|3063673|gb|AAC14136.1|_64:175 blasting: RECJ_ERWCH/66-238 gi|3063673|gb|AAC14136.1|_15:59 blasting: RECJ_ERWCH/66-238 gi|7451688|pir||H71513_134:247 blasting: RECJ_ERWCH/66-238 gi|7451688|pir||H71513_81:115 blasting: RECJ_ERWCH/66-238 gi|7451686|pir||G71656_131:249 blasting: RECJ_ERWCH/66-238 gi|7451686|pir||G71656_80:128 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_124:206 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_73:122 blasting: RECJ_ERWCH/66-238 gi|4101624|gb|AAD01239.1|_357:367 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_124:206 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_73:122 blasting: RECJ_ERWCH/66-238 gi|4102237|gb|AAD09318.1|_357:367 blasting: RECJ_ERWCH/66-238 gi|7451682|pir||B71946_102:202 blasting: RECJ_ERWCH/66-238 gi|7451682|pir||B71946_42:93 blasting: RECJ_ERWCH/66-238 gi|7451687|pir||D72062_135:248 blasting: RECJ_ERWCH/66-238 gi|7462837|pir||F72243_123:206 blasting: RECJ_ERWCH/66-238 gi|7462837|pir||F72243_72:121 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_61:140 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_3:52 blasting: RECJ_ERWCH/66-238 gi|7473679|pir||E75434_123:160 blasting: RECJ_ERWCH/66-238 gi|6967533|emb|CAB72521.1|_108:204 blasting: RECJ_ERWCH/66-238 gi|6967533|emb|CAB72521.1|_47:97 blasting: RECJ_ERWCH/66-238 gi|7190761|gb|AAF39542.1|_134:247 blasting: RECJ_ERWCH/66-238 gi|7226077|gb|AAF41253.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7226077|gb|AAF41253.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|7228156|emb|CAB77039.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7228156|emb|CAB77039.1|_67:118 blasting: RECJ_ERWCH/66-238 gi|7379749|emb|CAB84317.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7379749|emb|CAB84317.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|7453624|gb|AAF62912.1|_119:236 blasting: RECJ_ERWCH/66-238 gi|7453624|gb|AAF62912.1|_68:118 blasting: RECJ_ERWCH/66-238 gi|9106065|gb|AAF83920.1|AE003946_11_102:225 blasting: RECJ_ERWCH/66-238 gi|9106065|gb|AAF83920.1|AE003946_11_47:94 blasting: RECJ_ERWCH/66-238 gi|9656991|gb|AAF95560.1|_121:240 blasting: RECJ_ERWCH/66-238 gi|9656991|gb|AAF95560.1|_69:120 blasting: starting RECJ_HAEIN/63-233 with E=0.000050 RECJ_HAEIN/63-233 RECJ_HAEIN/63-233 blasting: RECJ_HAEIN/63-233 gi|96357|pir||C39202_122:239 blasting: RECJ_HAEIN/63-233 gi|96357|pir||C39202_74:119 blasting: RECJ_HAEIN/63-233 gi|2507106|sp|P21893|RECJ_ECOLI_121:238 blasting: RECJ_HAEIN/63-233 gi|2507106|sp|P21893|RECJ_ECOLI_73:118 blasting: RECJ_HAEIN/63-233 gi|1172895|sp|P45112|RECJ_HAEIN_115:232 blasting: RECJ_HAEIN/63-233 gi|1172895|sp|P45112|RECJ_HAEIN_65:114 blasting: RECJ_HAEIN/63-233 gi|2507107|sp|P39693|RECJ_ERWCH_120:237 blasting: RECJ_HAEIN/63-233 gi|2507107|sp|P39693|RECJ_ERWCH_71:117 blasting: RECJ_HAEIN/63-233 gi|7470865|pir||S77224_135:245 blasting: RECJ_HAEIN/63-233 gi|7470865|pir||S77224_84:133 blasting: RECJ_HAEIN/63-233 gi|7451683|pir||D64563_92:202 blasting: RECJ_HAEIN/63-233 gi|7451683|pir||D64563_48:93 blasting: RECJ_HAEIN/63-233 gi|7475820|pir||H69980_135:231 blasting: RECJ_HAEIN/63-233 gi|7475820|pir||H69980_80:124 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_129:213 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_78:122 blasting: RECJ_HAEIN/63-233 gi|7463775|pir||F70131_357:367 blasting: RECJ_HAEIN/63-233 gi|3063673|gb|AAC14136.1|_65:175 blasting: RECJ_HAEIN/63-233 gi|3063673|gb|AAC14136.1|_16:59 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_132:205 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_76:121 blasting: RECJ_HAEIN/63-233 gi|7521421|pir||D71289_355:369 blasting: RECJ_HAEIN/63-233 gi|7451688|pir||H71513_135:247 blasting: RECJ_HAEIN/63-233 gi|7451688|pir||H71513_86:113 blasting: RECJ_HAEIN/63-233 gi|7451686|pir||G71656_131:249 blasting: RECJ_HAEIN/63-233 gi|7451686|pir||G71656_85:128 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_129:213 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_78:122 blasting: RECJ_HAEIN/63-233 gi|4101624|gb|AAD01239.1|_357:367 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_129:213 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_78:122 blasting: RECJ_HAEIN/63-233 gi|4102237|gb|AAD09318.1|_357:367 blasting: RECJ_HAEIN/63-233 gi|7451682|pir||B71946_92:202 blasting: RECJ_HAEIN/63-233 gi|7451682|pir||B71946_48:93 blasting: RECJ_HAEIN/63-233 gi|7451687|pir||D72062_141:248 blasting: RECJ_HAEIN/63-233 gi|7451687|pir||D72062_86:113 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_131:206 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_172:231 blasting: RECJ_HAEIN/63-233 gi|7462837|pir||F72243_79:121 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_66:141 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_8:52 blasting: RECJ_HAEIN/63-233 gi|7473679|pir||E75434_122:160 blasting: RECJ_HAEIN/63-233 gi|6967533|emb|CAB72521.1|_98:204 blasting: RECJ_HAEIN/63-233 gi|6967533|emb|CAB72521.1|_49:97 blasting: RECJ_HAEIN/63-233 gi|7190761|gb|AAF39542.1|_135:247 blasting: RECJ_HAEIN/63-233 gi|7190761|gb|AAF39542.1|_86:113 blasting: RECJ_HAEIN/63-233 gi|7226077|gb|AAF41253.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7226077|gb|AAF41253.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|7228156|emb|CAB77039.1|_132:236 blasting: RECJ_HAEIN/63-233 gi|7228156|emb|CAB77039.1|_71:118 blasting: RECJ_HAEIN/63-233 gi|7379749|emb|CAB84317.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7379749|emb|CAB84317.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|7453624|gb|AAF62912.1|_121:236 blasting: RECJ_HAEIN/63-233 gi|7453624|gb|AAF62912.1|_72:118 blasting: RECJ_HAEIN/63-233 gi|9106065|gb|AAF83920.1|AE003946_11_108:225 blasting: RECJ_HAEIN/63-233 gi|9106065|gb|AAF83920.1|AE003946_11_49:94 blasting: RECJ_HAEIN/63-233 gi|9656991|gb|AAF95560.1|_123:240 blasting: RECJ_HAEIN/63-233 gi|9656991|gb|AAF95560.1|_73:120 blasting: starting O51269/73-370 with E=0.000050 O51269/73-370 O51269/73-370 blasting: O51269/73-370 gi|96357|pir||C39202_121:202 blasting: O51269/73-370 gi|96357|pir||C39202_68:119 blasting: O51269/73-370 gi|96357|pir||C39202_213:240 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_120:201 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: O51269/73-370 gi|2507106|sp|P21893|RECJ_ECOLI_212:239 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_121:197 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_63:114 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_220:233 blasting: O51269/73-370 gi|1172895|sp|P45112|RECJ_HAEIN_509:563 blasting: O51269/73-370 gi|2507107|sp|P39693|RECJ_ERWCH_119:200 blasting: O51269/73-370 gi|2507107|sp|P39693|RECJ_ERWCH_225:238 blasting: O51269/73-370 gi|7475820|pir||H69980_135:205 blasting: O51269/73-370 gi|7475820|pir||H69980_76:116 blasting: O51269/73-370 gi|7475820|pir||H69980_219:232 blasting: O51269/73-370 gi|7463775|pir||F70131_206:370 blasting: O51269/73-370 gi|7463775|pir||F70131_123:205 blasting: O51269/73-370 gi|7463775|pir||F70131_73:122 blasting: O51269/73-370 gi|7463775|pir||F70131_635:700 blasting: O51269/73-370 gi|7463775|pir||F70131_444:505 blasting: O51269/73-370 gi|7463775|pir||F70131_433:521 blasting: O51269/73-370 gi|7463775|pir||F70131_312:415 blasting: O51269/73-370 gi|3063673|gb|AAC14136.1|_62:140 blasting: O51269/73-370 gi|3063673|gb|AAC14136.1|_11:48 blasting: O51269/73-370 gi|7521421|pir||D71289_72:121 blasting: O51269/73-370 gi|7521421|pir||D71289_134:203 blasting: O51269/73-370 gi|7451688|pir||H71513_134:214 blasting: O51269/73-370 gi|7451688|pir||H71513_84:118 blasting: O51269/73-370 gi|7451688|pir||H71513_205:246 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_206:370 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_123:205 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_73:122 blasting: O51269/73-370 gi|4101624|gb|AAD01239.1|_309:415 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_206:370 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_123:205 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_73:122 blasting: O51269/73-370 gi|4102237|gb|AAD09318.1|_309:415 blasting: O51269/73-370 gi|7451687|pir||D72062_135:211 blasting: O51269/73-370 gi|7451687|pir||D72062_87:119 blasting: O51269/73-370 gi|7451687|pir||D72062_222:247 blasting: O51269/73-370 gi|7462837|pir||F72243_124:201 blasting: O51269/73-370 gi|7462837|pir||F72243_72:112 blasting: O51269/73-370 gi|7462837|pir||F72243_219:229 blasting: O51269/73-370 gi|7473679|pir||E75434_66:112 blasting: O51269/73-370 gi|7473679|pir||E75434_3:43 blasting: O51269/73-370 gi|6967533|emb|CAB72521.1|_99:172 blasting: O51269/73-370 gi|6967533|emb|CAB72521.1|_47:88 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_134:214 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_83:118 blasting: O51269/73-370 gi|7190761|gb|AAF39542.1|_205:246 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_120:200 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_68:118 blasting: O51269/73-370 gi|7226077|gb|AAF41253.1|_224:237 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_120:200 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_68:118 blasting: O51269/73-370 gi|7379749|emb|CAB84317.1|_224:234 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_120:195 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_68:118 blasting: O51269/73-370 gi|7453624|gb|AAF62912.1|_224:237 blasting: O51269/73-370 gi|9656991|gb|AAF95560.1|_122:203 blasting: O51269/73-370 gi|9656991|gb|AAF95560.1|_223:241 blasting: starting Q9Z7Z0/82-250 with E=0.000050 Q9Z7Z0/82-250 Q9Z7Z0/82-250 blasting: Q9Z7Z0/82-250 gi|96357|pir||C39202_130:238 blasting: Q9Z7Z0/82-250 gi|96357|pir||C39202_75:99 blasting: Q9Z7Z0/82-250 gi|2507106|sp|P21893|RECJ_ECOLI_129:237 blasting: Q9Z7Z0/82-250 gi|2507106|sp|P21893|RECJ_ECOLI_74:98 blasting: Q9Z7Z0/82-250 gi|1172895|sp|P45112|RECJ_HAEIN_123:231 blasting: Q9Z7Z0/82-250 gi|1172895|sp|P45112|RECJ_HAEIN_67:94 blasting: Q9Z7Z0/82-250 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: Q9Z7Z0/82-250 gi|7470865|pir||S77224_137:244 blasting: Q9Z7Z0/82-250 gi|7470865|pir||S77224_83:131 blasting: Q9Z7Z0/82-250 gi|7475820|pir||H69980_133:230 blasting: Q9Z7Z0/82-250 gi|7475820|pir||H69980_79:114 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_125:219 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_78:110 blasting: Q9Z7Z0/82-250 gi|7463775|pir||F70131_346:367 blasting: Q9Z7Z0/82-250 gi|3063673|gb|AAC14136.1|_62:176 blasting: Q9Z7Z0/82-250 gi|3063673|gb|AAC14136.1|_12:60 blasting: Q9Z7Z0/82-250 gi|7451688|pir||H71513_132:248 blasting: Q9Z7Z0/82-250 gi|7451688|pir||H71513_86:131 blasting: Q9Z7Z0/82-250 gi|7451686|pir||G71656_136:248 blasting: Q9Z7Z0/82-250 gi|7451686|pir||G71656_85:130 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_125:219 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_78:110 blasting: Q9Z7Z0/82-250 gi|4101624|gb|AAD01239.1|_346:367 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_125:219 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_78:110 blasting: Q9Z7Z0/82-250 gi|4102237|gb|AAD09318.1|_346:367 blasting: Q9Z7Z0/82-250 gi|7451687|pir||D72062_133:249 blasting: Q9Z7Z0/82-250 gi|7451687|pir||D72062_83:132 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_126:209 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_145:230 blasting: Q9Z7Z0/82-250 gi|7462837|pir||F72243_73:113 blasting: Q9Z7Z0/82-250 gi|7473679|pir||E75434_66:160 blasting: Q9Z7Z0/82-250 gi|7473679|pir||E75434_8:41 blasting: Q9Z7Z0/82-250 gi|6967533|emb|CAB72521.1|_101:203 blasting: Q9Z7Z0/82-250 gi|6967533|emb|CAB72521.1|_49:78 blasting: Q9Z7Z0/82-250 gi|7190761|gb|AAF39542.1|_132:248 blasting: Q9Z7Z0/82-250 gi|7190761|gb|AAF39542.1|_82:130 blasting: Q9Z7Z0/82-250 gi|7226077|gb|AAF41253.1|_128:235 blasting: Q9Z7Z0/82-250 gi|7228156|emb|CAB77039.1|_132:235 blasting: Q9Z7Z0/82-250 gi|7379749|emb|CAB84317.1|_128:235 blasting: Q9Z7Z0/82-250 gi|7453624|gb|AAF62912.1|_128:235 blasting: Q9Z7Z0/82-250 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: Q9Z7Z0/82-250 gi|9106065|gb|AAF83920.1|AE003946_11_50:72 blasting: Q9Z7Z0/82-250 gi|9656991|gb|AAF95560.1|_129:239 blasting: Q9Z7Z0/82-250 gi|9656991|gb|AAF95560.1|_73:98 blasting: starting P94659/11-177 with E=0.000050 P94659/11-177 P94659/11-177 blasting: P94659/11-177 gi|96357|pir||C39202_133:238 blasting: P94659/11-177 gi|96357|pir||C39202_75:99 blasting: P94659/11-177 gi|2507106|sp|P21893|RECJ_ECOLI_132:237 blasting: P94659/11-177 gi|2507106|sp|P21893|RECJ_ECOLI_74:98 blasting: P94659/11-177 gi|1172895|sp|P45112|RECJ_HAEIN_117:231 blasting: P94659/11-177 gi|1172895|sp|P45112|RECJ_HAEIN_63:112 blasting: P94659/11-177 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: P94659/11-177 gi|2507107|sp|P39693|RECJ_ERWCH_70:115 blasting: P94659/11-177 gi|7470865|pir||S77224_137:244 blasting: P94659/11-177 gi|7470865|pir||S77224_80:131 blasting: P94659/11-177 gi|7475820|pir||H69980_133:230 blasting: P94659/11-177 gi|7475820|pir||H69980_76:124 blasting: P94659/11-177 gi|7463775|pir||F70131_123:201 blasting: P94659/11-177 gi|7463775|pir||F70131_73:110 blasting: P94659/11-177 gi|3063673|gb|AAC14136.1|_62:176 blasting: P94659/11-177 gi|3063673|gb|AAC14136.1|_11:61 blasting: P94659/11-177 gi|7451688|pir||H71513_132:248 blasting: P94659/11-177 gi|7451688|pir||H71513_81:130 blasting: P94659/11-177 gi|7451686|pir||G71656_136:248 blasting: P94659/11-177 gi|7451686|pir||G71656_84:113 blasting: P94659/11-177 gi|4101624|gb|AAD01239.1|_123:201 blasting: P94659/11-177 gi|4101624|gb|AAD01239.1|_73:110 blasting: P94659/11-177 gi|4102237|gb|AAD09318.1|_123:201 blasting: P94659/11-177 gi|4102237|gb|AAD09318.1|_73:110 blasting: P94659/11-177 gi|7451682|pir||B71946_97:201 blasting: P94659/11-177 gi|7451682|pir||B71946_42:91 blasting: P94659/11-177 gi|7451687|pir||D72062_133:249 blasting: P94659/11-177 gi|7451687|pir||D72062_82:131 blasting: P94659/11-177 gi|7462837|pir||F72243_126:230 blasting: P94659/11-177 gi|7462837|pir||F72243_72:120 blasting: P94659/11-177 gi|7473679|pir||E75434_66:160 blasting: P94659/11-177 gi|7473679|pir||E75434_3:51 blasting: P94659/11-177 gi|6967533|emb|CAB72521.1|_101:203 blasting: P94659/11-177 gi|6967533|emb|CAB72521.1|_47:78 blasting: P94659/11-177 gi|7190761|gb|AAF39542.1|_132:248 blasting: P94659/11-177 gi|7190761|gb|AAF39542.1|_81:130 blasting: P94659/11-177 gi|7226077|gb|AAF41253.1|_130:235 blasting: P94659/11-177 gi|7226077|gb|AAF41253.1|_71:116 blasting: P94659/11-177 gi|7228156|emb|CAB77039.1|_120:235 blasting: P94659/11-177 gi|7228156|emb|CAB77039.1|_74:116 blasting: P94659/11-177 gi|7379749|emb|CAB84317.1|_130:235 blasting: P94659/11-177 gi|7379749|emb|CAB84317.1|_68:116 blasting: P94659/11-177 gi|7453624|gb|AAF62912.1|_130:235 blasting: P94659/11-177 gi|7453624|gb|AAF62912.1|_68:116 blasting: P94659/11-177 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: P94659/11-177 gi|9106065|gb|AAF83920.1|AE003946_11_47:92 blasting: P94659/11-177 gi|9656991|gb|AAF95560.1|_129:239 blasting: P94659/11-177 gi|9656991|gb|AAF95560.1|_74:118 blasting: starting O84453/81-249 with E=0.000050 O84453/81-249 O84453/81-249 blasting: O84453/81-249 gi|96357|pir||C39202_122:238 blasting: O84453/81-249 gi|96357|pir||C39202_75:100 blasting: O84453/81-249 gi|2507106|sp|P21893|RECJ_ECOLI_121:237 blasting: O84453/81-249 gi|2507106|sp|P21893|RECJ_ECOLI_74:99 blasting: O84453/81-249 gi|1172895|sp|P45112|RECJ_HAEIN_117:231 blasting: O84453/81-249 gi|1172895|sp|P45112|RECJ_HAEIN_68:95 blasting: O84453/81-249 gi|2507107|sp|P39693|RECJ_ERWCH_120:236 blasting: O84453/81-249 gi|7470865|pir||S77224_137:244 blasting: O84453/81-249 gi|7470865|pir||S77224_82:131 blasting: O84453/81-249 gi|7475820|pir||H69980_137:230 blasting: O84453/81-249 gi|7475820|pir||H69980_78:113 blasting: O84453/81-249 gi|7463775|pir||F70131_125:205 blasting: O84453/81-249 gi|7463775|pir||F70131_76:110 blasting: O84453/81-249 gi|7463775|pir||F70131_328:367 blasting: O84453/81-249 gi|3063673|gb|AAC14136.1|_62:176 blasting: O84453/81-249 gi|3063673|gb|AAC14136.1|_12:60 blasting: O84453/81-249 gi|7451688|pir||H71513_132:249 blasting: O84453/81-249 gi|7451688|pir||H71513_82:131 blasting: O84453/81-249 gi|7451686|pir||G71656_140:248 blasting: O84453/81-249 gi|7451686|pir||G71656_83:130 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_125:205 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_76:110 blasting: O84453/81-249 gi|4101624|gb|AAD01239.1|_328:367 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_125:205 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_76:110 blasting: O84453/81-249 gi|4102237|gb|AAD09318.1|_328:367 blasting: O84453/81-249 gi|7451687|pir||D72062_133:249 blasting: O84453/81-249 gi|7451687|pir||D72062_87:132 blasting: O84453/81-249 gi|7462837|pir||F72243_126:230 blasting: O84453/81-249 gi|7462837|pir||F72243_73:101 blasting: O84453/81-249 gi|7473679|pir||E75434_66:160 blasting: O84453/81-249 gi|7473679|pir||E75434_8:35 blasting: O84453/81-249 gi|6967533|emb|CAB72521.1|_98:203 blasting: O84453/81-249 gi|6967533|emb|CAB72521.1|_51:79 blasting: O84453/81-249 gi|7190761|gb|AAF39542.1|_133:249 blasting: O84453/81-249 gi|7190761|gb|AAF39542.1|_82:130 blasting: O84453/81-249 gi|7226077|gb|AAF41253.1|_129:235 blasting: O84453/81-249 gi|7226077|gb|AAF41253.1|_73:114 blasting: O84453/81-249 gi|7228156|emb|CAB77039.1|_120:235 blasting: O84453/81-249 gi|7228156|emb|CAB77039.1|_69:99 blasting: O84453/81-249 gi|7379749|emb|CAB84317.1|_129:235 blasting: O84453/81-249 gi|7379749|emb|CAB84317.1|_73:114 blasting: O84453/81-249 gi|7453624|gb|AAF62912.1|_129:235 blasting: O84453/81-249 gi|7453624|gb|AAF62912.1|_73:114 blasting: O84453/81-249 gi|9106065|gb|AAF83920.1|AE003946_11_95:224 blasting: O84453/81-249 gi|9106065|gb|AAF83920.1|AE003946_11_45:77 blasting: O84453/81-249 gi|9656991|gb|AAF95560.1|_123:239 blasting: O84453/81-249 gi|9656991|gb|AAF95560.1|_71:101 blasting: starting O67909/73-229 with E=0.000050 O67909/73-229 O67909/73-229 blasting: O67909/73-229 gi|1172895|sp|P45112|RECJ_HAEIN_120:233 blasting: O67909/73-229 gi|1172895|sp|P45112|RECJ_HAEIN_67:114 blasting: O67909/73-229 gi|7470865|pir||S77224_148:243 blasting: O67909/73-229 gi|7470865|pir||S77224_80:108 blasting: O67909/73-229 gi|7475820|pir||H69980_76:126 blasting: O67909/73-229 gi|7475820|pir||H69980_132:232 blasting: O67909/73-229 gi|7451685|pir||A70485_123:229 blasting: O67909/73-229 gi|7451685|pir||A70485_73:122 blasting: O67909/73-229 gi|7462837|pir||F72243_124:229 blasting: O67909/73-229 gi|7462837|pir||F72243_75:121 blasting: O67909/73-229 gi|7473679|pir||E75434_3:53 blasting: O67909/73-229 gi|7473679|pir||E75434_123:162 blasting: O67909/73-229 gi|7473679|pir||E75434_65:96 blasting: O67909/73-229 gi|7226077|gb|AAF41253.1|_68:117 blasting: O67909/73-229 gi|7226077|gb|AAF41253.1|_120:237 blasting: O67909/73-229 gi|7453624|gb|AAF62912.1|_68:117 blasting: O67909/73-229 gi|7453624|gb|AAF62912.1|_120:237 blasting: O67909/73-229 gi|9656991|gb|AAF95560.1|_69:120 blasting: O67909/73-229 gi|9656991|gb|AAF95560.1|_129:241 blasting: starting P73518/80-246 with E=0.000050 P73518/80-246 P73518/80-246 blasting: P73518/80-246 gi|96357|pir||C39202_129:238 blasting: P73518/80-246 gi|96357|pir||C39202_68:119 blasting: P73518/80-246 gi|2507106|sp|P21893|RECJ_ECOLI_128:237 blasting: P73518/80-246 gi|2507106|sp|P21893|RECJ_ECOLI_67:118 blasting: P73518/80-246 gi|1172895|sp|P45112|RECJ_HAEIN_124:231 blasting: P73518/80-246 gi|1172895|sp|P45112|RECJ_HAEIN_63:119 blasting: P73518/80-246 gi|2507107|sp|P39693|RECJ_ERWCH_127:236 blasting: P73518/80-246 gi|2507107|sp|P39693|RECJ_ERWCH_66:117 blasting: P73518/80-246 gi|7470865|pir||S77224_141:244 blasting: P73518/80-246 gi|7470865|pir||S77224_80:140 blasting: P73518/80-246 gi|7475820|pir||H69980_136:230 blasting: P73518/80-246 gi|7475820|pir||H69980_76:126 blasting: P73518/80-246 gi|7463775|pir||F70131_136:206 blasting: P73518/80-246 gi|7463775|pir||F70131_73:122 blasting: P73518/80-246 gi|7451685|pir||A70485_136:226 blasting: P73518/80-246 gi|7451685|pir||A70485_73:123 blasting: P73518/80-246 gi|3063673|gb|AAC14136.1|_75:175 blasting: P73518/80-246 gi|3063673|gb|AAC14136.1|_11:59 blasting: P73518/80-246 gi|7521421|pir||D71289_129:204 blasting: P73518/80-246 gi|7521421|pir||D71289_72:103 blasting: P73518/80-246 gi|7521421|pir||D71289_332:368 blasting: P73518/80-246 gi|7451688|pir||H71513_142:247 blasting: P73518/80-246 gi|7451688|pir||H71513_81:129 blasting: P73518/80-246 gi|7451686|pir||G71656_141:248 blasting: P73518/80-246 gi|7451686|pir||G71656_80:128 blasting: P73518/80-246 gi|4101624|gb|AAD01239.1|_136:206 blasting: P73518/80-246 gi|4101624|gb|AAD01239.1|_73:122 blasting: P73518/80-246 gi|4102237|gb|AAD09318.1|_136:206 blasting: P73518/80-246 gi|4102237|gb|AAD09318.1|_73:122 blasting: P73518/80-246 gi|7451687|pir||D72062_142:248 blasting: P73518/80-246 gi|7451687|pir||D72062_82:130 blasting: P73518/80-246 gi|7462837|pir||F72243_137:230 blasting: P73518/80-246 gi|7462837|pir||F72243_72:121 blasting: P73518/80-246 gi|7473679|pir||E75434_66:160 blasting: P73518/80-246 gi|7473679|pir||E75434_3:53 blasting: P73518/80-246 gi|6967533|emb|CAB72521.1|_108:203 blasting: P73518/80-246 gi|6967533|emb|CAB72521.1|_47:97 blasting: P73518/80-246 gi|7190761|gb|AAF39542.1|_142:247 blasting: P73518/80-246 gi|7190761|gb|AAF39542.1|_86:129 blasting: P73518/80-246 gi|7226077|gb|AAF41253.1|_126:235 blasting: P73518/80-246 gi|7226077|gb|AAF41253.1|_68:124 blasting: P73518/80-246 gi|7228156|emb|CAB77039.1|_132:235 blasting: P73518/80-246 gi|7228156|emb|CAB77039.1|_67:121 blasting: P73518/80-246 gi|7379749|emb|CAB84317.1|_126:235 blasting: P73518/80-246 gi|7379749|emb|CAB84317.1|_68:124 blasting: P73518/80-246 gi|7453624|gb|AAF62912.1|_126:235 blasting: P73518/80-246 gi|7453624|gb|AAF62912.1|_68:124 blasting: P73518/80-246 gi|9656991|gb|AAF95560.1|_130:239 blasting: P73518/80-246 gi|9656991|gb|AAF95560.1|_69:120 blasting: starting O83702/72-370 with E=0.000050 O83702/72-370 O83702/72-370 blasting: O83702/72-370 gi|7470865|pir||S77224_138:216 blasting: O83702/72-370 gi|7470865|pir||S77224_80:111 blasting: O83702/72-370 gi|7470865|pir||S77224_214:245 blasting: O83702/72-370 gi|7463775|pir||F70131_73:122 blasting: O83702/72-370 gi|7463775|pir||F70131_135:205 blasting: O83702/72-370 gi|7463775|pir||F70131_206:369 blasting: O83702/72-370 gi|7521421|pir||D71289_204:370 blasting: O83702/72-370 gi|7521421|pir||D71289_122:203 blasting: O83702/72-370 gi|7521421|pir||D71289_72:121 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_73:122 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_135:205 blasting: O83702/72-370 gi|4101624|gb|AAD01239.1|_206:369 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_73:122 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_135:205 blasting: O83702/72-370 gi|4102237|gb|AAD09318.1|_206:369 blasting: O83702/72-370 gi|7226077|gb|AAF41253.1|_126:200 blasting: O83702/72-370 gi|7226077|gb|AAF41253.1|_71:108 blasting: O83702/72-370 gi|7379749|emb|CAB84317.1|_126:200 blasting: O83702/72-370 gi|7379749|emb|CAB84317.1|_68:108 blasting: O83702/72-370 gi|7453624|gb|AAF62912.1|_126:200 blasting: O83702/72-370 gi|7453624|gb|AAF62912.1|_68:108 blasting: starting O31903/58-212 with E=0.000050 O31903/58-212 O31903/58-212 blasting: O31903/58-212 gi|7451688|pir||H71513_197:246 blasting: O31903/58-212 gi|7451688|pir||H71513_139:175 blasting: O31903/58-212 gi|7451688|pir||H71513_95:129 blasting: O31903/58-212 gi|7462837|pir||F72243_187:229 blasting: O31903/58-212 gi|7462837|pir||F72243_151:167 blasting: O31903/58-212 gi|7462837|pir||F72243_74:121 blasting: O31903/58-212 gi|7473679|pir||E75434_55:159 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_196:246 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_139:175 blasting: O31903/58-212 gi|7190761|gb|AAF39542.1|_95:129 blasting: starting O25177/21-204 with E=0.000050 O25177/21-204 O25177/21-204 blasting: O25177/21-204 gi|7464253|pir||A64573_21:200 blasting: O25177/21-204 gi|7464533|pir||B64696_21:200 blasting: O25177/21-204 gi|7464994|pir||E71824_21:200 blasting: starting O66728/1-143 with E=0.000050 O66728/1-143 O66728/1-143 blasting: O66728/1-143 gi|7520820|pir||D70337_1:96 blasting: O66728/1-143 gi|7520820|pir||D70337_97:143 blasting: O66728/1-143 gi|7520820|pir||D70337_151:159 blasting: starting YYBT_BACSU/333-502 with E=0.000050 YYBT_BACSU/333-502 YYBT_BACSU/333-502 blasting: YYBT_BACSU/333-502 gi|586814|sp|P37484|YYBT_BACSU_334:500 blasting: starting Y371_MYCPN/15-167 with E=0.000050 Y371_MYCPN/15-167 Y371_MYCPN/15-167 blasting: Y371_MYCPN/15-167 gi|406933|gb|AAD12529.1|_5:51 blasting: Y371_MYCPN/15-167 gi|2496409|sp|Q49428|Y371_MYCGE_17:131 blasting: Y371_MYCPN/15-167 gi|2496409|sp|Q49428|Y371_MYCGE_121:167 blasting: Y371_MYCPN/15-167 gi|2496410|sp|P75229|Y371_MYCPN_17:131 blasting: Y371_MYCPN/15-167 gi|2496410|sp|P75229|Y371_MYCPN_120:167 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_66:133 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_12:52 blasting: Y371_MYCPN/15-167 gi|7430136|pir||F69999_138:159 blasting: Y371_MYCPN/15-167 gi|6899406|gb|AAF30828.1|AE002139_1_16:141 blasting: starting O34600/8-159 with E=0.000050 O34600/8-159 O34600/8-159 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_59:107 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_150:160 blasting: O34600/8-159 gi|1346531|sp|P22746|MGPA_MYCGE_189:209 blasting: O34600/8-159 gi|2496409|sp|Q49428|Y371_MYCGE_76:144 blasting: O34600/8-159 gi|2496409|sp|Q49428|Y371_MYCGE_19:59 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_21:69 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_77:124 blasting: O34600/8-159 gi|2498554|sp|P75144|MGPA_MYCPN_153:173 blasting: O34600/8-159 gi|2496410|sp|P75229|Y371_MYCPN_77:144 blasting: O34600/8-159 gi|2496410|sp|P75229|Y371_MYCPN_19:59 blasting: O34600/8-159 gi|7430136|pir||F69999_61:159 blasting: O34600/8-159 gi|7430136|pir||F69999_10:60 blasting: starting MGPA_MYCGE/55-209 with E=0.000050 MGPA_MYCGE/55-209 MGPA_MYCGE/55-209 blasting: MGPA_MYCGE/55-209 gi|80890|pir||JQ0091_4:78 blasting: MGPA_MYCGE/55-209 gi|80890|pir||JQ0091_53:100 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_1:65 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_42:89 blasting: MGPA_MYCGE/55-209 gi|80899|pir||JS0068_2:19 blasting: MGPA_MYCGE/55-209 gi|1346531|sp|P22746|MGPA_MYCGE_55:186 blasting: MGPA_MYCGE/55-209 gi|1346531|sp|P22746|MGPA_MYCGE_161:208 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_77:119 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_16:59 blasting: MGPA_MYCGE/55-209 gi|2496409|sp|Q49428|Y371_MYCGE_154:165 blasting: MGPA_MYCGE/55-209 gi|2498554|sp|P75144|MGPA_MYCPN_17:148 blasting: MGPA_MYCGE/55-209 gi|2498554|sp|P75144|MGPA_MYCPN_125:172 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_9:51 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_64:108 blasting: MGPA_MYCGE/55-209 gi|7430136|pir||F69999_139:157 blasting: MGPA_MYCGE/55-209 gi|6899406|gb|AAF30828.1|AE002139_1_16:113 blasting: MGPA_MYCGE/55-209 gi|6899406|gb|AAF30828.1|AE002139_1_155:164 blasting: starting MGPA_MYCPN/17-173 with E=0.000050 MGPA_MYCPN/17-173 MGPA_MYCPN/17-173 blasting: MGPA_MYCPN/17-173 gi|80890|pir||JQ0091_13:76 blasting: MGPA_MYCPN/17-173 gi|80890|pir||JQ0091_53:100 blasting: MGPA_MYCPN/17-173 gi|80899|pir||JS0068_2:67 blasting: MGPA_MYCPN/17-173 gi|80899|pir||JS0068_42:89 blasting: MGPA_MYCPN/17-173 gi|1346531|sp|P22746|MGPA_MYCGE_55:184 blasting: MGPA_MYCPN/17-173 gi|1346531|sp|P22746|MGPA_MYCGE_161:208 blasting: MGPA_MYCPN/17-173 gi|2498554|sp|P75144|MGPA_MYCPN_17:150 blasting: MGPA_MYCPN/17-173 gi|2498554|sp|P75144|MGPA_MYCPN_125:172 blasting: MGPA_MYCPN/17-173 gi|7430136|pir||F69999_9:108 blasting: MGPA_MYCPN/17-173 gi|7430136|pir||F69999_139:157 blasting: starting O67552/12-160 with E=0.000050 O67552/12-160 O67552/12-160 blasting: O67552/12-160 gi|7477397|pir||H70693_129:183 blasting: O67552/12-160 gi|7477397|pir||H70693_38:68 blasting: O67552/12-160 gi|7445472|pir||F70440_14:111 blasting: O67552/12-160 gi|7445472|pir||F70440_112:159 blasting: O67552/12-160 gi|7471305|pir||A75470_27:72 blasting: O67552/12-160 gi|7471305|pir||A75470_160:173 blasting: starting O51564/17-170 with E=0.000050 O51564/17-170 O51564/17-170 blasting: O51564/17-170 gi|7430137|pir||B70177_17:134 blasting: O51564/17-170 gi|7430137|pir||B70177_123:169 blasting: O51564/17-170 gi|7514584|pir||D71323_37:90 blasting: O51564/17-170 gi|7514584|pir||D71323_110:140 blasting: O51564/17-170 gi|7514584|pir||D71323_174:191 blasting: O51564/17-170 gi|7514584|pir||D71323_157:167 blasting: starting O83450/37-192 with E=0.000050 O83450/37-192 O83450/37-192 blasting: O83450/37-192 gi|7430137|pir||B70177_18:118 blasting: O83450/37-192 gi|7430137|pir||B70177_135:169 blasting: O83450/37-192 gi|7514584|pir||D71323_38:156 blasting: O83450/37-192 gi|7514584|pir||D71323_145:191 blasting: O83450/37-192 gi|7462295|pir||G72233_8:45 blasting: O83450/37-192 gi|7462295|pir||G72233_72:107 blasting: O83450/37-192 gi|7462295|pir||G72233_148:156 blasting: starting P71615/29-184 with E=0.000050 P71615/29-184 P71615/29-184 blasting: P71615/29-184 gi|7477397|pir||H70693_29:148 blasting: P71615/29-184 gi|7477397|pir||H70693_137:183 blasting: P71615/29-184 gi|7462295|pir||G72233_72:120 blasting: P71615/29-184 gi|7462295|pir||G72233_13:60 blasting: P71615/29-184 gi|7462295|pir||G72233_136:156 blasting: starting P72962/61-231 with E=0.000050 P72962/61-231 P72962/61-231 blasting: P72962/61-231 gi|3025197|sp|Q59027|YG33_METJA_167:274 blasting: P72962/61-231 gi|3025197|sp|Q59027|YG33_METJA_269:310 blasting: P72962/61-231 gi|7469901|pir||S74940_61:230 blasting: P72962/61-231 gi|7448978|pir||D69503_155:267 blasting: P72962/61-231 gi|7448980|pir||H71452_164:297 blasting: P72962/61-231 gi|7448979|pir||B75216_164:297 blasting: starting YG33_METJA/160-312 with E=0.000050 YG33_METJA/160-312 YG33_METJA/160-312 blasting: YG33_METJA/160-312 gi|3025197|sp|Q59027|YG33_METJA_162:276 blasting: YG33_METJA/160-312 gi|3025197|sp|Q59027|YG33_METJA_265:312 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_67:200 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_218:229 blasting: YG33_METJA/160-312 gi|7469901|pir||S74940_312:324 blasting: YG33_METJA/160-312 gi|7448978|pir||D69503_161:270 blasting: YG33_METJA/160-312 gi|7448978|pir||D69503_259:304 blasting: YG33_METJA/160-312 gi|7448980|pir||H71452_159:263 blasting: YG33_METJA/160-312 gi|7448980|pir||H71452_278:319 blasting: YG33_METJA/160-312 gi|7448979|pir||B75216_159:263 blasting: YG33_METJA/160-312 gi|7448979|pir||B75216_278:319 blasting: starting O28250/152-306 with E=0.000050 O28250/152-306 O28250/152-306 blasting: O28250/152-306 gi|3025197|sp|Q59027|YG33_METJA_169:260 blasting: O28250/152-306 gi|3025197|sp|Q59027|YG33_METJA_265:308 blasting: O28250/152-306 gi|7469901|pir||S74940_63:201 blasting: O28250/152-306 gi|7448978|pir||D69503_153:270 blasting: O28250/152-306 gi|7448978|pir||D69503_259:306 blasting: O28250/152-306 gi|7448980|pir||H71452_166:297 blasting: O28250/152-306 gi|7448979|pir||B75216_160:297 blasting: starting O58017/157-321 with E=0.000050 O58017/157-321 O58017/157-321 blasting: O58017/157-321 gi|3025197|sp|Q59027|YG33_METJA_161:260 blasting: O58017/157-321 gi|3025197|sp|Q59027|YG33_METJA_269:310 blasting: O58017/157-321 gi|7469901|pir||S74940_67:201 blasting: O58017/157-321 gi|7469901|pir||S74940_218:229 blasting: O58017/157-321 gi|7448978|pir||D69503_161:270 blasting: O58017/157-321 gi|7448978|pir||D69503_263:304 blasting: O58017/157-321 gi|7448980|pir||H71452_158:298 blasting: O58017/157-321 gi|7448980|pir||H71452_224:319 blasting: O58017/157-321 gi|7448979|pir||B75216_158:298 blasting: O58017/157-321 gi|7448979|pir||B75216_224:319 blasting: starting O73979/14-165 with E=0.000050 O73979/14-165 O73979/14-165 blasting: O73979/14-165 gi|3024962|sp|Q58395|Y988_METJA_9:107 blasting: O73979/14-165 gi|3024962|sp|Q58395|Y988_METJA_127:159 blasting: O73979/14-165 gi|7518694|pir||B71167_15:130 blasting: O73979/14-165 gi|7518694|pir||B71167_117:164 blasting: O73979/14-165 gi|7518105|pir||C75065_16:131 blasting: O73979/14-165 gi|7518105|pir||C75065_118:165 blasting: starting Y988_METJA/5-161 with E=0.000050 Y988_METJA/5-161 Y988_METJA/5-161 blasting: Y988_METJA/5-161 gi|3024962|sp|Q58395|Y988_METJA_6:138 blasting: Y988_METJA/5-161 gi|3024962|sp|Q58395|Y988_METJA_112:161 blasting: Y988_METJA/5-161 gi|7518694|pir||B71167_14:112 blasting: Y988_METJA/5-161 gi|7518694|pir||B71167_132:163 blasting: Y988_METJA/5-161 gi|7518105|pir||C75065_14:113 blasting: Y988_METJA/5-161 gi|7518105|pir||C75065_133:144 blasting: starting O83781/33-211 with E=0.000050 O83781/33-211 O83781/33-211 blasting: O83781/33-211 gi|7519590|pir||E71279_33:211 blasting: starting O25683/3-150 with E=0.000050 O25683/3-150 O25683/3-150 blasting: O25683/3-150 gi|2125805|emb|CAA70008.1|_4:58 blasting: O25683/3-150 gi|7464457|pir||B64650_11:131 blasting: O25683/3-150 gi|7464457|pir||B64650_4:49 blasting: O25683/3-150 gi|7464457|pir||B64650_132:150 blasting: O25683/3-150 gi|7464707|pir||D71937_10:130 blasting: O25683/3-150 gi|7464707|pir||D71937_3:48 blasting: O25683/3-150 gi|7464707|pir||D71937_131:149 blasting: O25683/3-150 gi|4680599|gb|AAD27690.1|AF125197_5_3:55 blasting: O25683/3-150 gi|6968320|emb|CAB73140.1|_59:123 blasting: O25683/3-150 gi|6968320|emb|CAB73140.1|_3:46 blasting: starting O31824/1-143 with E=0.000050 O31824/1-143 O31824/1-143 blasting: O31824/1-143 gi|7475203|pir||A69893_9:126 blasting: O31824/1-143 gi|7475203|pir||A69893_127:143 blasting: make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' make -k pf01368-tuned.t2k.a2m.gz \ pf01368-tuned.t2k.pa \ pf01368-tuned.t2k.pa.html \ pf01368-tuned.t2k.2d \ pf01368-tuned.t2k.tree \ pf01368-tuned.t2k_sorted.pa \ pf01368-tuned.t2k.tree.ps \ pf01368-tuned.t2k.tree-unroot.ps make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' /projects/compbio/experiments/models.97/scripts2k/target2k -out pf01368-tuned.t2k \ -seed pf01368-tuned.seq \ -all @@@@ chgrp protein /projects/compbio/tmp/target2k-beta-14177 @@@@ cp /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.seq m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:52 # About to count sequences in /projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.0002 prefilter: 10, actual: 0.001 prefilter: 400, actual: 0.005 /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5 /projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 541007 reverse_diff= 4 /projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1 /projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 @@@@ blast-prefilter -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 20000 @@@@ chgrp protein /projects/compbio/tmp/blast-prefilter-beta-22325 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: E-value thresholds used are For /export/projects/compbio/tmp/target2k-beta-14177/prefilter_1.fa, 0.01 For /export/projects/compbio/tmp/target2k-beta-14177/prefilter_2.fa, 1 For /export/projects/compbio/tmp/target2k-beta-14177/prefilter_3.fa, 10 For /export/projects/compbio/tmp/target2k-beta-14177/prefilter_4.fa, 400 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: db=/projects/compbio/data/nrp/nr @@@@ uniqueseq init -alignfile /export/projects/compbio/tmp/target2k-beta-14177/m0.a2m -a protein -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file /export/projects/compbio/tmp/target2k-beta-14177/m0.a2m (94 sequences, 183 columns) as A2M alignment. Writing sequence output to init.a2m. Dropping 0 (of 94) duplicate sequences with identical IDs 47 sequences left after dropping 47 of 94 sequences. @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta E=400 V=20000 B=0 -gi > 1.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 1.fasta < /dev/null @@@@ rm -f 1.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 2.fasta E=400 V=20000 B=0 -gi > 2.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 2.fasta < /dev/null @@@@ rm -f 2.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 3.fasta E=400 V=20000 B=0 -gi > 3.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 3.fasta < /dev/null @@@@ rm -f 3.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 4.fasta E=400 V=20000 B=0 -gi > 4.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 4.fasta < /dev/null @@@@ rm -f 4.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 5.fasta E=400 V=20000 B=0 -gi > 5.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 5.fasta < /dev/null @@@@ rm -f 5.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 6.fasta E=400 V=20000 B=0 -gi > 6.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 6.fasta < /dev/null @@@@ rm -f 6.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 7.fasta E=400 V=20000 B=0 -gi > 7.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 7.fasta < /dev/null @@@@ rm -f 7.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 8.fasta E=400 V=20000 B=0 -gi > 8.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 8.fasta < /dev/null @@@@ rm -f 8.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 9.fasta E=400 V=20000 B=0 -gi > 9.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 9.fasta < /dev/null @@@@ rm -f 9.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 10.fasta E=400 V=20000 B=0 -gi > 10.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 10.fasta < /dev/null @@@@ rm -f 10.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 11.fasta E=400 V=20000 B=0 -gi > 11.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 11.fasta < /dev/null @@@@ rm -f 11.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 12.fasta E=400 V=20000 B=0 -gi > 12.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 12.fasta < /dev/null @@@@ rm -f 12.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 13.fasta E=400 V=20000 B=0 -gi > 13.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 13.fasta < /dev/null @@@@ rm -f 13.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 14.fasta E=400 V=20000 B=0 -gi > 14.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 14.fasta < /dev/null @@@@ rm -f 14.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 15.fasta E=400 V=20000 B=0 -gi > 15.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 15.fasta < /dev/null @@@@ rm -f 15.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 16.fasta E=400 V=20000 B=0 -gi > 16.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 16.fasta < /dev/null @@@@ rm -f 16.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 17.fasta E=400 V=20000 B=0 -gi > 17.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 17.fasta < /dev/null @@@@ rm -f 17.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 18.fasta E=400 V=20000 B=0 -gi > 18.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 18.fasta < /dev/null @@@@ rm -f 18.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 19.fasta E=400 V=20000 B=0 -gi > 19.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 19.fasta < /dev/null @@@@ rm -f 19.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 20.fasta E=400 V=20000 B=0 -gi > 20.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 20.fasta < /dev/null @@@@ rm -f 20.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 21.fasta E=400 V=20000 B=0 -gi > 21.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 21.fasta < /dev/null @@@@ rm -f 21.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 22.fasta E=400 V=20000 B=0 -gi > 22.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 22.fasta < /dev/null @@@@ rm -f 22.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 23.fasta E=400 V=20000 B=0 -gi > 23.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 23.fasta < /dev/null @@@@ rm -f 23.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 24.fasta E=400 V=20000 B=0 -gi > 24.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 24.fasta < /dev/null @@@@ rm -f 24.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 25.fasta E=400 V=20000 B=0 -gi > 25.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 25.fasta < /dev/null @@@@ rm -f 25.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 26.fasta E=400 V=20000 B=0 -gi > 26.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 26.fasta < /dev/null @@@@ rm -f 26.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 27.fasta E=400 V=20000 B=0 -gi > 27.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 27.fasta < /dev/null @@@@ rm -f 27.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 28.fasta E=400 V=20000 B=0 -gi > 28.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 28.fasta < /dev/null @@@@ rm -f 28.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 29.fasta E=400 V=20000 B=0 -gi > 29.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 29.fasta < /dev/null @@@@ rm -f 29.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 30.fasta E=400 V=20000 B=0 -gi > 30.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 30.fasta < /dev/null @@@@ rm -f 30.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 31.fasta E=400 V=20000 B=0 -gi > 31.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 31.fasta < /dev/null @@@@ rm -f 31.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 32.fasta E=400 V=20000 B=0 -gi > 32.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 32.fasta < /dev/null @@@@ rm -f 32.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 33.fasta E=400 V=20000 B=0 -gi > 33.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 33.fasta < /dev/null @@@@ rm -f 33.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 34.fasta E=400 V=20000 B=0 -gi > 34.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 34.fasta < /dev/null @@@@ rm -f 34.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 35.fasta E=400 V=20000 B=0 -gi > 35.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 35.fasta < /dev/null @@@@ rm -f 35.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 36.fasta E=400 V=20000 B=0 -gi > 36.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 36.fasta < /dev/null @@@@ rm -f 36.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 37.fasta E=400 V=20000 B=0 -gi > 37.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 37.fasta < /dev/null @@@@ rm -f 37.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 38.fasta E=400 V=20000 B=0 -gi > 38.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 38.fasta < /dev/null @@@@ rm -f 38.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 39.fasta E=400 V=20000 B=0 -gi > 39.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 39.fasta < /dev/null @@@@ rm -f 39.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 40.fasta E=400 V=20000 B=0 -gi > 40.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 40.fasta < /dev/null @@@@ rm -f 40.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 41.fasta E=400 V=20000 B=0 -gi > 41.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 41.fasta < /dev/null @@@@ rm -f 41.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 42.fasta E=400 V=20000 B=0 -gi > 42.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 42.fasta < /dev/null @@@@ rm -f 42.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 43.fasta E=400 V=20000 B=0 -gi > 43.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 43.fasta < /dev/null @@@@ rm -f 43.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 44.fasta E=400 V=20000 B=0 -gi > 44.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 44.fasta < /dev/null @@@@ rm -f 44.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 45.fasta E=400 V=20000 B=0 -gi > 45.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 45.fasta < /dev/null @@@@ rm -f 45.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 46.fasta E=400 V=20000 B=0 -gi > 46.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 46.fasta < /dev/null @@@@ rm -f 46.fasta-blast.out < /dev/null @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 47.fasta E=400 V=20000 B=0 -gi > 47.fasta-blast.out Searched 541007 sequences # parsing wu-blastp output @@@@ rm -f 47.fasta < /dev/null @@@@ rm -f 47.fasta-blast.out < /dev/null # Extracting hits in FASTA format from /projects/compbio/data/nrp/nr @@@@ rm -rf /projects/compbio/tmp/blast-prefilter-beta-22325 < /dev/null @@@@ modelfromalign unused -alignfile m0.a2m \ -constraints_from_align 1 -constraints_out m0.cst SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m0.a2m (94 sequences, 183 columns) as A2M alignment. # About to count sequences in m0.a2m # About to count sequences in prefilter_1.fa @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file m0.a2m (94 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -simple_threshold -26.4115278685381 -Emax 0.0001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.109289617486339 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.862701 Database has 31 sequences with 14604 residues. @@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \ -NLLfile tmp_1-a.mstat -a2mdots 0 SAM: sortseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:48 Reading alignment file tmp_1-a.mult (30 sequences, 183 columns) as A2M alignment. Reading scores from file tmp_1-a.mstat Writing sequence output to tmp_1-a-sort.a2m. @@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq @@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst # About to count sequences in tmp_1-a.train.seq # num_seqs=124 nll_thresh=-22.4115278685381 frac_id=0.887236064235591 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 0.887236064235591 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_1-a.train.seq (124 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 6 (of 124) duplicate sequences with differing IDs Dropping 6 (of 124) duplicate sequences with identical IDs Dropping 20 (of 124) sequences with > 88.7% id 51 sequences left after dropping 73 of 124 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_1-a.train.seq (51 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -480.02 -21.42 -339.31 153.96 40 0 184 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -db m0.a2m -db tmp_1-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -26.4115278685381 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.109289617486339 \ -align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.cst Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -343.703369 Database has 124 sequences with 30086 residues. @@@@ cp -f tmp_1-b.mult /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.a2m # About to count sequences in prefilter_2.fa @@@@ modelfromalign tmp_2-a -alignfile /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.cst -constraints_out tmp_2-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.a2m (118 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -simple_threshold -25.7183806877933 -Emax 0.0002 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0002\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.109289617486339 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -70.692482 Database has 58 sequences with 28662 residues. @@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \ -NLLfile tmp_2-a.mstat -a2mdots 0 SAM: sortseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:48 Reading alignment file tmp_2-a.mult (40 sequences, 183 columns) as A2M alignment. Reading scores from file tmp_2-a.mstat Writing sequence output to tmp_2-a-sort.a2m. @@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq @@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst # About to count sequences in tmp_2-a.train.seq # num_seqs=134 nll_thresh=-21.7183806877933 frac_id=0.867921551753814 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 0.867921551753814 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_2-a.train.seq (134 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 8 (of 134) duplicate sequences with differing IDs Dropping 8 (of 134) duplicate sequences with identical IDs Dropping 22 (of 134) sequences with > 86.8% id 57 sequences left after dropping 77 of 134 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_2-a.train.seq (57 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -477.10 -42.97 -289.07 167.26 40 0 184 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -db m0.a2m -db tmp_2-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -25.7183806877933 -Emax 0.0002 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.109289617486339 \ -align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.cst Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -318.508514 Database has 135 sequences with 35011 residues. @@@@ cp -f tmp_2-b.mult /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.a2m # About to count sequences in prefilter_3.fa @@@@ modelfromalign tmp_3-a -alignfile /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.cst -constraints_out tmp_3-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.a2m (133 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -simple_threshold -24.1089427738805 -Emax 0.001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.109289617486339 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -33.487411 Database has 179 sequences with 70679 residues. @@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \ -NLLfile tmp_3-a.mstat -a2mdots 0 SAM: sortseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:48 Reading alignment file tmp_3-a.mult (49 sequences, 183 columns) as A2M alignment. Reading scores from file tmp_3-a.mstat Writing sequence output to tmp_3-a-sort.a2m. @@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq @@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst # About to count sequences in tmp_3-a.train.seq # num_seqs=143 nll_thresh=-20.1089427738805 frac_id=0.842535214463264 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 0.842535214463264 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_3-a.train.seq (143 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 9 (of 143) duplicate sequences with differing IDs Dropping 9 (of 143) duplicate sequences with identical IDs Dropping 29 (of 143) sequences with > 84.3% id 58 sequences left after dropping 85 of 143 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_3-a.train.seq (58 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -476.43 -35.19 -260.38 170.57 40 0 184 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -db m0.a2m -db tmp_3-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -24.1089427738805 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.109289617486339 \ -align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.cst Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -301.017242 Database has 143 sequences with 38677 residues. @@@@ cp -f tmp_3-b.mult /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.a2m # About to count sequences in prefilter_4.fa @@@@ modelfromalign tmp_4-a -alignfile /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.cst -constraints_out tmp_4-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.a2m (140 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -simple_threshold -22.4995048540528 -Emax 0.005 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.109289617486339 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) .... Average NLL-Simple NULL score: -10.276458 Database has 3664 sequences with 776645 residues. @@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \ -NLLfile tmp_4-a.mstat -a2mdots 0 SAM: sortseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:48 Reading alignment file tmp_4-a.mult (88 sequences, 183 columns) as A2M alignment. Reading scores from file tmp_4-a.mstat Writing sequence output to tmp_4-a-sort.a2m. @@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq @@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst # About to count sequences in tmp_4-a.train.seq # num_seqs=182 nll_thresh=-18.4995048540528 frac_id=0.787425405777047 @@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \ -percent_id 0.787425405777047 -a2mdots 0 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file tmp_4-a.train.seq (182 sequences, 183 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 19 (of 182) duplicate sequences with differing IDs Dropping 19 (of 182) duplicate sequences with identical IDs Dropping 47 (of 182) sequences with > 78.7% id 69 sequences left after dropping 113 of 182 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_4-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file tmp_4-a.train.seq (69 sequences, 183 columns) as A2M alignment. @@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_4-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_3.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.2 (July 31, 2000) compiled 07/31/00_14:08:12 -477.61 -31.44 -188.97 166.58 38 0 184 @@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -db m0.a2m -db tmp_4-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -22.4995048540528 -Emax 0.005 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.109289617486339 \ -align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.cst Reading parameter file tmp_4-b.mod tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -253.862427 Database has 186 sequences with 58844 residues. @@@@ cp -f tmp_4-b.mult /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.a2m @@@@ modelfromalign tmp_5-a -alignfile /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.cst -constraints_out tmp_5-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.a2m (183 sequences, 183 columns) as A2M alignment. @@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 541007 \ -simple_threshold -22.4995048540528 -Emax 0.005 \ -adpstyle 5 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.109289617486339 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst Reading parameter file tmp_5-a.mod tmp_5-a.mod(21): Reading MODEL -- Model from alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k_4.a2m SAM: hmmscore v3.2 (July 31, 2000) compiled 08/04/00_11:31:33 Calculating Distances (. = 1000 sequences) .... Average NLL-Simple NULL score: -10.340627 Database has 3664 sequences with 776645 residues. @@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \ -NLLfile tmp_5-a.mstat -a2mdots 0 SAM: sortseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:48 Reading alignment file tmp_5-a.mult (84 sequences, 183 columns) as A2M alignment. Reading scores from file tmp_5-a.mstat Writing sequence output to tmp_5-a-sort.a2m. @@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq @@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst @@@@ cp tmp_5-a.train.seq /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k.a2m @@@@ cp tmp_5-a.train.cst /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k.cst @@@@ rm -rf /projects/compbio/tmp/target2k-beta-14177 < /dev/null gzip -f pf01368-tuned.t2k.a2m pf01368-tuned.t2k_*.a2m prettyalign pf01368-tuned.t2k.a2m.gz -m8 -i -n -L3333 > pf01368-tuned.t2k.pa SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51 gunzip -c pf01368-tuned.t2k.a2m.gz > tmp.a2m a2m2html -a2m_in tmp.a2m -retrieve > pf01368-tuned.t2k.pa.html SAM: /projects/compbio/bin/alpha/prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51 rm tmp.a2m echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net > tmp.script echo ReadA2M pf01368-tuned.t2k.a2m.gz >> tmp.script echo PrintPrediction pf01368-tuned.t2k.2d 3670-4530-6947 >> tmp.script echo PrintPredictionFasta pf01368-tuned.t2k.2d.seq >> tmp.script echo PrintRDB pf01368-tuned.t2k.2d.rdb >> tmp.script predict-2nd < tmp.script # command:# Neural network set to overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # command:# Reading A2M format from pf01368-tuned.t2k.a2m.gz # Using SequenceWeight EntropyWeight(1.4, 10) # Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer. # pf01368-tuned.t2k.a2m with 178 sequences, total weight= 106.018 avg weight= 0.595604 clipped 46 iterations # AdjustWeights couldn't save exactly 1.4 bits/position, saving 1.1228 bits. Regularizing alignment for pf01368-tuned.t2k.a2m.gz # After reading pf01368-tuned.t2k.a2m.gz, have 183 columns in 1 chains # command:# Initializing Gain for FinalLayer # Initializing Gain for ordering_layer # Initializing Gain for SecondLayer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to pf01368-tuned.t2k.2d # command:# Network initialization done # Printing prediction in FASTA format to pf01368-tuned.t2k.2d.seq # command:# Network initialization done # Printing prediction to pf01368-tuned.t2k.2d.rdb # command:rm tmp.script gunzip -f pf01368-tuned.t2k.a2m.gz /projects/compbio/usr/karplus/src/phytree/phytree -o -i -r flat pf01368-tuned.t2k pf01368-tuned.t2k.a2m /projects/compbio/lib/recode2.20comp Prior library /projects/compbio/lib/recode2.20comp read. Reading alignment file pf01368-tuned.t2k.a2m (178 sequences) as A2M alignment. Alignment pf01368-tuned.t2k.a2m read. Adding sequences:0 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 One dot for every 10 merges: .................. Merges done. CPU = user 0: 3: 4 system 0: 0: 0 gzip -f pf01368-tuned.t2k.a2m gzip -f pf01368-tuned.t2k_sorted.a2m rm pf01368-tuned.t2k.phytrace pf01368-tuned.t2k.tree_weight prettyalign pf01368-tuned.t2k_sorted.a2m.gz -m8 -i -n -L3333 > pf01368-tuned.t2k_sorted.pa SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51 /projects/compbio/usr/karplus/src/phytree/dg pf01368-tuned.t2k.tree /projects/compbio/usr/karplus/src/phytree/dtree pf01368-tuned.t2k.tree make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t87/pfam-dhh' echo "WeightingRegularizer /projects/compbio/lib/recode3.20comp" > tmp.script echo "SequenceWeight EntropyWeight 0.5 10.0" >> tmp.script echo "ReadA2M pf01368-tuned.t2k.a2m.gz" >> tmp.script echo "SavingsRegularizer /projects/compbio/lib/recode3.20comp" >> tmp.script echo "PrintSavings pf01368-tuned.t2k.saves" >> tmp.script echo "exit" >> tmp.script estimate-dist < tmp.script # command:Weighting regularizer set to recode3.20comp # command:Sequence weighting on input set to EntropyWeight(0.5, 10) # command:Reading A2M format from pf01368-tuned.t2k.a2m.gz % using regularizer recode3.20comp % pf01368-tuned.t2k.a2m.gz with 178 sequences, total weight= 9.59325 avg weight= 0.0538947 After reading pf01368-tuned.t2k.a2m.gz, have 183 columns, totalling 1442.02 Using SequenceWeight EntropyWeight(0.5, 10) Using regularizer recode3.20compfor sequence weight regularizer. # command:Savings regularizer set to recode3.20comp # command:% Computing savings using regularizer recode3.20comp Printed 183 columns to pf01368-tuned.t2k.saves # command:rm tmp.script if test -e pf01368-tuned.t2k-logo.labels ;\ then makelogo -b 60 -t pf01368-tuned.t2k -o pf01368-tuned.t2k-logo.eps -l pf01368-tuned.t2k-logo.labels pf01368-tuned.t2k.saves ;\ else makelogo -b 60 -t pf01368-tuned.t2k -o pf01368-tuned.t2k-logo.eps -lf pf01368-tuned.t2k.2d.seq pf01368-tuned.t2k.saves ;\ fi /projects/compbio/experiments/models.97/scripts99/score-target -alignment pf01368-tuned.t2k.a2m.gz -build w0.5 \ -db /projects/compbio/data/pdb/all-protein \ -Emax 40.0 \ -viterbi 0 -sw_score 2 \ -output pf01368-tuned.t2k-w0.5-pdb.rdb PATH=.:/projects/compbio/experiments/models.97/scripts99:/projects/compbio/bin:/projects/compbio/bin/alpha:/projects/compbio/bin/hmmscripts:/projects/compbio/bin/scripts:/sbin:/usr/sbin:/bin:/usr/bin:/usr/local/gnu/bin:/usr/local/share/request/bin:/usr/local/bin @@@@ mkdir /projects/compbio/tmp/score-target-14955 @@@@ mkdir /projects/compbio/tmp/score-target-14955/for-scorescript @@@@ /projects/compbio/experiments/models.97/scripts99/score-mods-vs-seqs.pl -root_tmp /projects/compbio/tmp/score-target-14955/for-scorescript -a2msfile /projects/compbio/tmp/score-target-14955/score-target.a2m \ -buildscript /projects/compbio/bin/scripts/w0.5 -seqfile /projects/compbio/data/pdb/all-protein -Emax 40.0 -viterbi 0 \ -sw_score 2 -output /projects/compbio/tmp/score-target-14955/score-target.op @@@@ chgrp protein /projects/compbio/tmp/score-target-14955/for-scorescript/split-tmp @@@@ chgrp protein /projects/compbio/tmp/score-target-14955/for-scorescript/split-tmp @@@@ /projects/compbio/bin/scripts/w0.5 /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k.a2m.gz /projects/compbio/tmp/score-target-14955/for-scorescript/split-tmp/beta-18091/pf01368-tuned.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-17196 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp -alignfile /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (July 31, 2000) compiled 07/31/00_14:08:59 Reading alignment file /export/projects/compbio/experiments/casp4/t87/pfam-dhh/pf01368-tuned.t2k.a2m.gz (178 sequences, 183 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp.a2m. Dropping 5 (of 178) duplicate sequences with differing IDs Dropping 5 (of 178) duplicate sequences with identical IDs Dropping 59 (of 178) sequences with > 80.0% id 67 sequences left after dropping 111 of 178 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp.a2m (67 sequences, 183 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-17196/tmp.mod /projects/compbio/tmp/score-target-14955/for-scorescript/split-tmp/beta-18091/pf01368-tuned.t2k.mod @@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-17196 80.0% id 67 sequences left after dropping 111 of 178 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-3707/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-3707/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (July 31, 2000) compiled 07/31/00_14:08:27 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3707/tmp.a2m (67 sequences, 183 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-3707/tmp.mod pf01368-tuned.t2k-w0.5.mod @@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-3707