PFRMAT SS TARGET T0087 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0087.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 27.6601 METHOD MODEL 1 M C 0.906 S C 0.773 K C 0.548 I E 0.902 L E 0.980 V E 0.986 F E 0.971 G E 0.839 H C 0.509 Q C 0.770 N C 0.890 P C 0.919 D C 0.968 S H 0.745 D H 0.847 A H 0.926 I H 0.965 G H 0.978 S H 0.989 S H 0.992 M H 0.995 A H 0.997 Y H 0.994 A H 0.996 Y H 0.990 L H 0.978 K H 0.963 R H 0.910 Q H 0.847 L H 0.512 G C 0.946 V C 0.901 D C 0.745 A C 0.531 Q E 0.786 A E 0.909 V E 0.858 A E 0.720 L C 0.645 G C 0.808 N C 0.840 P C 0.812 N C 0.775 E H 0.531 E H 0.614 T H 0.754 A H 0.799 F H 0.810 V H 0.834 L H 0.832 D H 0.790 Y H 0.754 F H 0.620 G C 0.721 I C 0.757 Q C 0.763 A C 0.814 P C 0.755 P C 0.634 V C 0.455 V E 0.531 K C 0.509 S C 0.846 A C 0.495 Q C 0.521 A C 0.642 E C 0.768 G C 0.851 A C 0.840 K C 0.686 Q E 0.842 V E 0.975 I E 0.996 L E 0.994 T E 0.906 D C 0.592 H C 0.940 N C 0.929 E C 0.848 F C 0.755 Q C 0.677 Q C 0.584 S C 0.522 I C 0.479 A C 0.539 D C 0.583 I C 0.535 R C 0.609 E C 0.702 V C 0.776 E C 0.609 V E 0.736 V E 0.913 E E 0.976 V E 0.976 V E 0.886 D C 0.562 H C 0.915 H C 0.929 R C 0.840 V C 0.865 A C 0.862 N C 0.829 F C 0.733 E C 0.645 T C 0.667 A C 0.726 N C 0.785 P C 0.748 L C 0.544 Y C 0.397 M E 0.550 R E 0.477 L C 0.526 E C 0.702 P C 0.705 V C 0.649 G C 0.805 S H 0.446 A H 0.891 S H 0.978 S H 0.991 I H 0.994 V H 0.996 Y H 0.998 R H 0.997 L H 0.993 Y H 0.993 K H 0.985 E H 0.961 N H 0.868 G C 0.920 V C 0.940 A C 0.922 I C 0.898 P C 0.921 K H 0.961 E H 0.981 I H 0.995 A H 0.992 G H 0.994 V H 0.992 M H 0.987 L H 0.985 S H 0.973 G H 0.926 L H 0.854 I H 0.784 S H 0.625 D H 0.437 T C 0.511 L C 0.515 L C 0.536 L C 0.639 K C 0.772 S C 0.880 P C 0.883 T C 0.906 T C 0.905 H C 0.965 A H 0.860 S H 0.897 D H 0.943 P H 0.989 A H 0.992 V H 0.995 A H 0.990 E H 0.991 D H 0.983 L H 0.954 A H 0.933 K H 0.878 I H 0.806 A H 0.531 G C 0.901 V C 0.956 D C 0.949 L H 0.935 Q H 0.972 E H 0.987 Y H 0.985 G H 0.984 L H 0.985 A H 0.978 M H 0.957 L H 0.897 K H 0.861 A H 0.733 G H 0.560 T C 0.598 N C 0.563 L C 0.512 A H 0.487 S H 0.492 K H 0.470 T H 0.488 A H 0.907 A H 0.935 Q H 0.947 L H 0.950 V H 0.945 D H 0.941 I H 0.939 D H 0.917 A H 0.883 K H 0.831 T H 0.722 F H 0.568 E H 0.380 L C 0.379 N C 0.664 G C 0.760 S E 0.538 Q E 0.806 V E 0.858 R E 0.879 V E 0.888 A E 0.901 Q E 0.940 V E 0.930 N E 0.907 T E 0.810 V E 0.605 D C 0.562 I H 0.662 N H 0.804 E H 0.887 V H 0.873 L H 0.891 E H 0.868 R H 0.860 Q H 0.827 N H 0.783 E H 0.772 I H 0.838 E H 0.899 E H 0.930 A H 0.946 I H 0.962 K H 0.971 A H 0.975 S H 0.966 Q H 0.953 A H 0.931 A H 0.860 N H 0.612 G C 0.856 Y C 0.894 S C 0.784 D E 0.543 F E 0.880 V E 0.975 L E 0.995 M E 0.997 I E 0.996 T E 0.982 D E 0.926 I E 0.771 L E 0.534 N C 0.703 S C 0.894 N C 0.889 S C 0.636 E E 0.731 I E 0.909 L E 0.956 A E 0.952 L E 0.897 G E 0.601 N C 0.852 N C 0.899 T C 0.714 D C 0.490 K H 0.453 V H 0.912 E H 0.960 A H 0.966 A H 0.952 F H 0.950 N H 0.926 F H 0.873 T H 0.711 L C 0.847 K C 0.883 N C 0.809 N C 0.526 H H 0.447 A H 0.411 F E 0.359 L E 0.389 A C 0.472 G C 0.714 A E 0.490 V E 0.630 S E 0.658 R C 0.484 K C 0.543 K E 0.486 Q E 0.512 V H 0.393 V H 0.617 P H 0.859 Q H 0.910 L H 0.935 T H 0.949 E H 0.932 S H 0.921 F H 0.845 N H 0.584 G C 0.950 END