;  SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
; ------------- Citations (SAM, SAM-T99, HMMs) -----------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; --------------------------------------------------------------
; Sequence numbers correspond to the following labels:
; 1 gi|6014666|gb|AAF01449.1|AF187880_4_5:176
; 2 gi|281803|pir||S25660_39:202
; 3 gi|136659|sp|P26602|UBIC_ECOLI_2:165
; 4 T0086
; 5 gi|7379648|emb|CAB84215.1|_5:151
; 6 gi|7225962|gb|AAF41147.1|_5:151
              10         20        30        40         50        60   
              |          |         |         |          |         |   
   1 YRFSQPHLEW.NSYGHWRSSIAATQREWLFDRSSLTRRLRTLsDNEFEVIPLREA--AGPMLPEE
   2 SHPALTQLRA.LRYCKEIPALDPQLLDWLLLEDSMTKRFEQQ.GKTVSVTMIREGFVEQNEIPEE
   3 SHPALTQLRA.LRYCKEIPALDPQLLDWLLLEDSMTKRFEQQ.GKTVSVTMIREGFVEQNEIPEE
   4 SHPALTQLRA.LRYCKEIPALDPQLLDWLLLEDSMTKRFEQQ.GKTVSVTMIREGFVEQNEIPEE
   5 FEEWLPDLPAdVSDGIGLPMS------RLLKARSLTAALRAL.PHLFSVELLKLGELE-------
   6 FGKWLPDLPAaISDGISLPMV------RLLHTRSLTAALRAL.PHTFSVELLKLGELE-------


              70        80        90       100       110       120     
              |         |         |         |         |         |     
   1 CrvlGLQPGVTG-WIREVYLAGFGRPWVYARSVISHCDVEGSDSALLQLGNIPLGSLLFGEN.PY
   2 L...PLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFTSS.TL
   3 L...PLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFTSS.TL
   4 L...PLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFTSS.TL
   5 -...---TECGGRLVREVLLKLDGIPVVAARSECRIG--SAFWQNILDCGTRPLGERLFQADlEG
   6 -...---TECGGRLVREVLLKLDRIPVVEARSECRIG--SAFWQNILDCGTRPLGERLFQADlEG


         130                    140       150       160    
          |                      |         |         |    
   1 KRSEIEV.....CRYpda11rpaYPLWARRSVFSRRQSRVLVHEMFLPA----
   2 TRDFIEI.....GRD........AGLWGRRSRLRLSGKPLLLTELFLPASPLY
   3 TRDFIEI.....GRD........AGLWGRRSRLRLSGKPLLLTELFLPASPLY
   4 TRDFIEI.....GRD........AGLWGRRSRLRLSGKPLLLTELFLPASPLY
   5 ARSAFEFavfgeGCG........RYFAARRSRFSHHGEEMLLTEYFLP-----
   6 ARSAFEFavageGCG........RYFAARRSRFSRHGEEMLLTEYFLP-----