PFRMAT SS
TARGET T0086
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0086.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.57144
METHOD
MODEL 1
S C 0.75
H C 0.67
P C 0.67
A C 0.68
L C 0.85
T C 0.79
Q C 0.78
L C 0.78
R C 0.69
A C 0.53
L C 0.48
R C 0.49
Y C 0.61
C C 0.84
K C 0.72
E C 0.73
I C 0.82
P C 0.86
A C 0.87
L C 0.89
D C 0.91
P H 0.64
Q H 0.74
L H 0.85
L H 0.83
D H 0.83
W H 0.82
L H 0.75
L H 0.57
L C 0.59
E C 0.64
D C 0.73
S C 0.75
M H 0.92
T H 0.93
K H 0.96
R H 0.95
F H 0.94
E H 0.91
Q H 0.81
Q H 0.55
G C 0.92
K C 0.89
T C 0.61
V E 0.74
S E 0.91
V E 0.97
T E 0.97
M E 0.96
I E 0.81
R E 0.64
E C 0.48
G C 0.55
F C 0.44
V C 0.50
E C 0.61
Q C 0.74
N C 0.71
E C 0.61
I C 0.67
P H 0.57
E H 0.73
E H 0.79
L H 0.69
P C 0.96
L C 0.92
L C 0.94
P C 0.73
K C 0.56
E H 0.54
S H 0.53
R C 0.58
Y H 0.64
W H 0.77
L H 0.84
R H 0.83
E H 0.82
I H 0.78
L H 0.86
L H 0.86
C H 0.72
A C 0.50
D C 0.76
G C 0.99
E C 0.77
P E 0.66
W E 0.82
L E 0.86
A E 0.80
G E 0.74
R E 0.76
T E 0.82
V E 0.85
V E 0.74
P E 0.56
V C 0.55
S C 0.56
T C 0.51
L C 0.63
S C 0.76
G C 0.53
P H 0.55
E H 0.93
L H 0.94
A H 0.96
L H 0.96
Q H 0.96
K H 0.95
L H 0.88
G C 0.97
K C 0.93
T C 0.75
P C 0.75
L C 0.72
G C 0.72
R C 0.56
Y C 0.46
L C 0.42
F C 0.58
T C 0.88
S C 0.86
S C 0.89
T C 0.84
L C 0.84
T C 0.79
R C 0.66
D C 0.55
F E 0.58
I E 0.76
E E 0.83
I E 0.79
G C 0.62
R C 0.79
D C 0.77
A C 0.72
G C 0.74
L C 0.57
W C 0.41
G E 0.50
R E 0.56
R H 0.39
S H 0.37
R H 0.38
L E 0.36
R C 0.43
L C 0.58
S C 0.72
G C 0.87
K C 0.66
P C 0.45
L E 0.61
L H 0.45
L H 0.51
T H 0.63
E H 0.65
L H 0.55
F H 0.53
L C 0.79
P C 0.90
A C 0.90
S C 0.91
P C 0.92
L C 0.95
Y C 0.98
END