PFRMAT SS
TARGET T0086
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0086.psi-blast.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.68787
METHOD
MODEL 1
S C 0.84
H C 0.70
P C 0.53
A H 0.57
L H 0.72
T H 0.77
Q H 0.77
L H 0.72
R H 0.66
A H 0.64
L H 0.57
R C 0.48
Y C 0.54
C C 0.65
K C 0.58
E C 0.49
I C 0.43
P C 0.42
A C 0.45
L C 0.44
D C 0.48
P H 0.66
Q H 0.68
L H 0.87
L H 0.88
D H 0.87
W H 0.83
L H 0.73
L H 0.56
L C 0.52
E H 0.55
D H 0.59
S H 0.64
M H 0.65
T H 0.66
K H 0.65
R H 0.60
F H 0.58
- H 0.51
E C 0.51
Q C 0.71
Q C 0.87
G C 0.87
K C 0.81
T C 0.49
V E 0.79
S E 0.88
V E 0.91
T E 0.88
M E 0.76
I E 0.43
R C 0.56
E C 0.56
G C 0.54
F C 0.55
L C 0.67
P C 0.73
L C 0.79
L C 0.87
P H 0.58
K H 0.65
E H 0.64
S C 0.54
R C 0.68
Y C 0.88
W C 0.76
L C 0.50
R E 0.74
E E 0.94
I E 0.98
L E 0.98
L E 0.97
C E 0.84
A C 0.53
D C 0.88
G C 0.91
E C 0.87
P C 0.75
W C 0.53
L C 0.45
A C 0.45
G C 0.60
R C 0.59
T E 0.52
V E 0.63
V E 0.58
P C 0.51
V C 0.48
S C 0.42
T C 0.40
L C 0.54
S C 0.71
G C 0.78
P C 0.65
E H 0.88
L H 0.91
A H 0.94
L H 0.92
Q H 0.91
K H 0.88
L H 0.78
G C 0.95
K C 0.89
T C 0.80
P C 0.82
L C 0.69
G C 0.56
R C 0.37
Y E 0.48
L E 0.42
F C 0.43
T C 0.56
S C 0.67
S C 0.77
T C 0.76
L C 0.75
T C 0.76
R C 0.74
D C 0.65
F E 0.64
I E 0.86
E E 0.89
I E 0.85
G E 0.53
R C 0.71
D C 0.78
A C 0.78
G C 0.80
L C 0.68
W C 0.58
G C 0.48
R E 0.40
R E 0.51
S E 0.54
R E 0.49
L E 0.49
R E 0.47
L C 0.46
S C 0.62
G C 0.72
K C 0.65
P C 0.44
L E 0.57
L E 0.57
L E 0.48
T H 0.40
E H 0.43
L H 0.38
F C 0.52
L C 0.65
P C 0.78
A C 0.74
S C 0.75
P C 0.76
L C 0.79
Y C 0.85
- C 0.96
END