# TARGET T0128 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0128.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 38.6986 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.079 0.191 0.730 2 R 0.075 0.255 0.670 3 G 0.087 0.298 0.616 4 S 0.127 0.329 0.545 5 H 0.155 0.368 0.477 6 H 0.188 0.363 0.449 7 H 0.190 0.378 0.432 8 H 0.194 0.428 0.378 9 H 0.231 0.418 0.350 10 H 0.253 0.405 0.343 11 G 0.325 0.337 0.337 12 S 0.416 0.251 0.333 13 V 0.449 0.224 0.327 14 T 0.475 0.194 0.331 15 T 0.434 0.203 0.363 16 K 0.476 0.158 0.367 17 R 0.474 0.140 0.386 18 Y 0.573 0.074 0.353 19 T 0.515 0.066 0.419 20 L 0.196 0.030 0.775 21 P 0.128 0.030 0.843 22 P 0.086 0.050 0.864 23 L 0.052 0.056 0.892 24 P 0.034 0.047 0.918 25 Y 0.035 0.046 0.919 26 A 0.013 0.047 0.941 27 Y 0.003 0.476 0.521 28 N 0.004 0.516 0.480 29 A 0.013 0.555 0.432 30 L 0.029 0.540 0.431 31 E 0.052 0.430 0.518 32 P 0.067 0.341 0.592 33 Y 0.183 0.240 0.578 34 I 0.252 0.171 0.577 35 S 0.124 0.075 0.801 36 A 0.002 0.967 0.031 37 E 0.002 0.969 0.029 38 I 0.005 0.970 0.025 39 M 0.015 0.955 0.030 40 Q 0.018 0.955 0.027 41 L 0.015 0.950 0.035 42 H 0.012 0.923 0.065 43 H 0.007 0.919 0.074 44 Q 0.002 0.954 0.044 45 K 0.003 0.955 0.042 46 H 0.003 0.967 0.029 47 H 0.004 0.974 0.022 48 Q 0.004 0.983 0.014 49 G 0.003 0.985 0.012 50 Y 0.006 0.980 0.014 51 V 0.005 0.976 0.020 52 N 0.002 0.969 0.029 53 G 0.002 0.945 0.053 54 A 0.001 0.965 0.034 55 N 0.001 0.974 0.025 56 A 0.002 0.968 0.031 57 A 0.004 0.946 0.050 58 L 0.002 0.960 0.038 59 E 0.003 0.942 0.055 60 K 0.003 0.896 0.101 61 L 0.005 0.645 0.350 62 E 0.007 0.739 0.254 63 K 0.009 0.726 0.265 64 F 0.024 0.605 0.371 65 R 0.033 0.420 0.548 66 K 0.032 0.294 0.673 67 G 0.022 0.340 0.637 68 E 0.024 0.625 0.351 69 A 0.038 0.751 0.211 70 Q 0.054 0.816 0.129 71 I 0.085 0.815 0.099 72 D 0.080 0.824 0.096 73 I 0.062 0.819 0.119 74 R 0.035 0.809 0.156 75 A 0.020 0.729 0.251 76 V 0.016 0.630 0.354 77 L 0.012 0.660 0.327 78 R 0.011 0.759 0.231 79 D 0.024 0.729 0.247 80 L 0.046 0.708 0.246 81 S 0.059 0.659 0.282 82 F 0.063 0.480 0.457 83 H 0.069 0.275 0.656 84 L 0.136 0.478 0.386 85 N 0.146 0.603 0.252 86 G 0.121 0.726 0.153 87 H 0.111 0.771 0.117 88 I 0.084 0.826 0.090 89 L 0.032 0.883 0.085 90 H 0.020 0.920 0.060 91 S 0.009 0.974 0.016 92 I 0.010 0.977 0.013 93 F 0.024 0.959 0.017 94 W 0.025 0.952 0.023 95 P 0.022 0.936 0.041 96 N 0.020 0.865 0.115 97 M 0.055 0.516 0.428 98 A 0.038 0.179 0.783 99 P 0.014 0.110 0.876 100 P 0.030 0.086 0.884 101 G 0.050 0.070 0.880 102 K 0.017 0.036 0.946 103 G 0.004 0.052 0.943 104 G 0.006 0.060 0.934 105 G 0.029 0.060 0.911 106 K 0.045 0.041 0.914 107 P 0.039 0.073 0.888 108 G 0.019 0.204 0.777 109 G 0.001 0.943 0.056 110 K 0.001 0.976 0.024 111 I 0.001 0.992 0.007 112 A 0.001 0.995 0.005 113 D 0.001 0.996 0.003 114 L 0.001 0.995 0.004 115 I 0.001 0.992 0.008 116 N 0.001 0.980 0.018 117 K 0.001 0.961 0.038 118 F 0.004 0.832 0.164 119 F 0.006 0.551 0.443 120 G 0.004 0.028 0.969 121 S 0.012 0.046 0.942 122 F 0.001 0.938 0.061 123 E 0.001 0.976 0.024 124 K 0.001 0.989 0.011 125 F 0.001 0.991 0.009 126 K 0.001 0.993 0.007 127 E 0.001 0.996 0.004 128 E 0.001 0.995 0.004 129 F 0.001 0.995 0.005 130 S 0.001 0.993 0.006 131 Q 0.001 0.991 0.009 132 A 0.002 0.980 0.018 133 A 0.004 0.957 0.038 134 K 0.006 0.921 0.073 135 N 0.012 0.784 0.204 136 V 0.054 0.427 0.518 137 E 0.107 0.194 0.699 138 G 0.113 0.044 0.843 139 V 0.191 0.020 0.789 140 G 0.341 0.125 0.534 141 W 0.648 0.066 0.286 142 A 0.856 0.047 0.096 143 I 0.924 0.025 0.051 144 L 0.958 0.011 0.031 145 V 0.951 0.004 0.045 146 Y 0.852 0.003 0.146 147 E 0.489 0.004 0.506 148 P 0.059 0.029 0.911 149 L 0.019 0.032 0.948 150 E 0.013 0.026 0.961 151 E 0.026 0.003 0.970 152 Q 0.594 0.002 0.404 153 L 0.906 0.001 0.094 154 L 0.973 0.001 0.026 155 I 0.981 0.001 0.018 156 L 0.937 0.003 0.061 157 Q 0.787 0.003 0.210 158 I 0.442 0.010 0.548 159 E 0.245 0.025 0.730 160 K 0.101 0.044 0.855 161 H 0.036 0.085 0.880 162 N 0.027 0.051 0.922 163 L 0.061 0.058 0.881 164 M 0.068 0.084 0.847 165 H 0.193 0.123 0.684 166 A 0.134 0.120 0.746 167 A 0.032 0.077 0.891 168 D 0.025 0.015 0.960 169 A 0.174 0.003 0.824 170 Q 0.633 0.002 0.366 171 V 0.875 0.002 0.123 172 L 0.933 0.004 0.063 173 L 0.930 0.018 0.052 174 A 0.919 0.027 0.054 175 L 0.788 0.048 0.163 176 D 0.486 0.126 0.388 177 V 0.171 0.554 0.275 178 W 0.081 0.805 0.114 179 E 0.024 0.945 0.031 180 H 0.016 0.960 0.024 181 A 0.014 0.974 0.011 182 Y 0.012 0.976 0.012 183 Y 0.013 0.975 0.012 184 L 0.024 0.946 0.029 185 Q 0.030 0.882 0.088 186 Y 0.024 0.828 0.148 187 K 0.021 0.551 0.427 188 N 0.024 0.185 0.790 189 D 0.021 0.274 0.705 190 R 0.022 0.192 0.786 191 G 0.008 0.665 0.327 192 S 0.006 0.864 0.130 193 Y 0.009 0.929 0.063 194 V 0.011 0.949 0.040 195 D 0.019 0.933 0.048 196 N 0.021 0.911 0.069 197 W 0.037 0.838 0.124 198 W 0.046 0.734 0.220 199 N 0.037 0.626 0.337 200 V 0.128 0.476 0.395 201 V 0.156 0.214 0.630 202 N 0.056 0.057 0.887 203 W 0.002 0.953 0.045 204 D 0.003 0.950 0.048 205 D 0.002 0.972 0.026 206 V 0.002 0.965 0.033 207 E 0.001 0.984 0.015 208 R 0.001 0.989 0.010 209 R 0.001 0.991 0.008 210 L 0.001 0.991 0.009 211 Q 0.001 0.991 0.008 212 K 0.001 0.988 0.012 213 A 0.001 0.977 0.022 214 L 0.001 0.952 0.047 215 N 0.001 0.930 0.069 216 G 0.003 0.771 0.226 217 Q 0.017 0.440 0.543 218 I 0.053 0.437 0.510 219 A 0.054 0.422 0.524 220 L 0.094 0.284 0.622 221 K 0.083 0.153 0.763 222 L 0.025 0.023 0.952