PFRMAT SS
TARGET T0128
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0128.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 38.6986
METHOD
MODEL 1
M C 0.730
R C 0.670
G C 0.616
S C 0.545
H C 0.477
H C 0.449
H C 0.432
H H 0.428
H H 0.418
H H 0.405
G C 0.337
S E 0.416
V E 0.449
T E 0.475
T E 0.434
K E 0.476
R E 0.474
Y E 0.573
T E 0.515
L C 0.775
P C 0.843
P C 0.864
L C 0.892
P C 0.918
Y C 0.919
A C 0.941
Y C 0.521
N H 0.516
A H 0.555
L H 0.540
E C 0.518
P C 0.592
Y C 0.578
I C 0.577
S C 0.801
A H 0.967
E H 0.969
I H 0.970
M H 0.955
Q H 0.955
L H 0.950
H H 0.923
H H 0.919
Q H 0.954
K H 0.955
H H 0.967
H H 0.974
Q H 0.983
G H 0.985
Y H 0.980
V H 0.976
N H 0.969
G H 0.945
A H 0.965
N H 0.974
A H 0.968
A H 0.946
L H 0.960
E H 0.942
K H 0.896
L H 0.645
E H 0.739
K H 0.726
F H 0.605
R C 0.548
K C 0.673
G C 0.637
E H 0.625
A H 0.751
Q H 0.816
I H 0.815
D H 0.824
I H 0.819
R H 0.809
A H 0.729
V H 0.630
L H 0.660
R H 0.759
D H 0.729
L H 0.708
S H 0.659
F H 0.480
H C 0.656
L H 0.478
N H 0.603
G H 0.726
H H 0.771
I H 0.826
L H 0.883
H H 0.920
S H 0.974
I H 0.977
F H 0.959
W H 0.952
P H 0.936
N H 0.865
M H 0.516
A C 0.783
P C 0.876
P C 0.884
G C 0.880
K C 0.946
G C 0.943
G C 0.934
G C 0.911
K C 0.914
P C 0.888
G C 0.777
G H 0.943
K H 0.976
I H 0.992
A H 0.995
D H 0.996
L H 0.995
I H 0.992
N H 0.980
K H 0.961
F H 0.832
F H 0.551
G C 0.969
S C 0.942
F H 0.938
E H 0.976
K H 0.989
F H 0.991
K H 0.993
E H 0.996
E H 0.995
F H 0.995
S H 0.993
Q H 0.991
A H 0.980
A H 0.957
K H 0.921
N H 0.784
V C 0.518
E C 0.699
G C 0.843
V C 0.789
G C 0.534
W E 0.648
A E 0.856
I E 0.924
L E 0.958
V E 0.951
Y E 0.852
E C 0.506
P C 0.911
L C 0.948
E C 0.961
E C 0.970
Q E 0.594
L E 0.906
L E 0.973
I E 0.981
L E 0.937
Q E 0.787
I C 0.548
E C 0.730
K C 0.855
H C 0.880
N C 0.922
L C 0.881
M C 0.847
H C 0.684
A C 0.746
A C 0.891
D C 0.960
A C 0.824
Q E 0.633
V E 0.875
L E 0.933
L E 0.930
A E 0.919
L E 0.788
D E 0.486
V H 0.554
W H 0.805
E H 0.945
H H 0.960
A H 0.974
Y H 0.976
Y H 0.975
L H 0.946
Q H 0.882
Y H 0.828
K H 0.551
N C 0.790
D C 0.705
R C 0.786
G H 0.665
S H 0.864
Y H 0.929
V H 0.949
D H 0.933
N H 0.911
W H 0.838
W H 0.734
N H 0.626
V H 0.476
V C 0.630
N C 0.887
W H 0.953
D H 0.950
D H 0.972
V H 0.965
E H 0.984
R H 0.989
R H 0.991
L H 0.991
Q H 0.991
K H 0.988
A H 0.977
L H 0.952
N H 0.930
G H 0.771
Q C 0.543
I C 0.510
A C 0.524
L C 0.622
K C 0.763
L C 0.952
END