PFRMAT SS
TARGET T0128
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0128-subfamily.tuneup.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 5.17112
METHOD
MODEL 1
- C 0.889
K C 0.659
R C 0.551
Y C 0.470
T C 0.542
L C 0.807
P C 0.879
P C 0.866
L C 0.840
P C 0.883
Y C 0.874
A C 0.928
Y H 0.639
N H 0.670
A H 0.726
L H 0.600
E H 0.467
P C 0.480
Y C 0.488
I C 0.504
S C 0.737
A H 0.873
E H 0.860
I H 0.851
M H 0.741
Q H 0.658
L H 0.593
H H 0.474
H H 0.688
Q H 0.756
K H 0.747
H H 0.799
H H 0.841
Q H 0.870
G H 0.894
Y H 0.890
V H 0.893
N H 0.844
G H 0.774
A H 0.928
N H 0.961
A H 0.972
A H 0.985
L H 0.990
E H 0.993
K H 0.992
L H 0.991
E H 0.987
K H 0.976
F H 0.943
R H 0.879
K H 0.734
G C 0.604
E C 0.670
A H 0.527
Q H 0.797
I H 0.855
D H 0.851
I H 0.881
R H 0.903
A H 0.887
V H 0.804
L H 0.707
R H 0.658
D C 0.476
L C 0.386
S E 0.496
F E 0.623
H C 0.520
L C 0.698
N C 0.774
G C 0.534
H H 0.576
I H 0.762
L H 0.850
H H 0.888
S H 0.963
I H 0.958
F H 0.941
W H 0.910
P H 0.837
N H 0.755
M C 0.533
A C 0.754
P C 0.871
P C 0.919
G C 0.913
K C 0.918
G C 0.916
G C 0.948
G C 0.914
K C 0.909
P C 0.887
G C 0.752
G H 0.564
K H 0.737
I H 0.969
A H 0.980
D H 0.987
L H 0.981
I H 0.972
N H 0.936
K H 0.888
F H 0.684
F C 0.499
G C 0.886
S C 0.710
F H 0.885
E H 0.952
K H 0.973
F H 0.976
K H 0.979
E H 0.985
E H 0.982
F H 0.990
S H 0.988
Q H 0.982
A H 0.957
A H 0.923
K H 0.859
N H 0.604
V C 0.935
E C 0.900
G C 0.831
V C 0.714
G C 0.504
W E 0.802
A E 0.939
I E 0.959
L E 0.961
V E 0.925
Y E 0.817
E E 0.633
P C 0.687
L C 0.846
E C 0.910
E C 0.877
Q E 0.536
L E 0.839
L E 0.943
I E 0.982
L E 0.982
Q E 0.967
I E 0.899
E E 0.678
K C 0.432
H C 0.517
N C 0.587
L C 0.596
M C 0.663
H C 0.652
A C 0.720
A C 0.758
D C 0.817
A C 0.559
Q E 0.369
V E 0.445
L H 0.485
L H 0.615
A H 0.571
L H 0.721
D H 0.648
V H 0.670
W H 0.727
E H 0.785
H H 0.842
A H 0.833
Y H 0.836
Y H 0.860
L H 0.789
Q H 0.766
Y H 0.740
K H 0.704
N H 0.486
D H 0.539
R C 0.590
G H 0.544
S H 0.725
Y H 0.841
V H 0.884
D H 0.821
N H 0.733
W H 0.590
W C 0.470
N C 0.578
V C 0.573
V C 0.696
N C 0.868
W H 0.933
D H 0.936
D H 0.933
V H 0.899
E H 0.876
R H 0.804
R H 0.621
L C 0.689
Q C 0.971
END